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Cheetah documentation page 2
23 Jul 2015 | Series | Contributor(s): Nadia Zatsepin, Richard Kirian
Cheetah documentation Page 2.
Click here for Page 1.
Click here for a list of all keywords.
The official Cheetah website is http://www.desy.de/~barty/cheetah/
These pages will not reproduce all the content from the Cheetah site, but are meant as an addendum.
Running Cheetah …
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Cheetah documentation
21 Jul 2015 | Series | Contributor(s): Nadia Zatsepin
What is Cheetah and how do you use it?
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Cheetah documentation - all keywords
21 Jul 2015 | Series | Contributor(s): Richard Kirian, Nadia Zatsepin
List of all Cheetah's keywords
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1. Before your beamtime
21 Jul 2015 | Series | Contributor(s): Nadia Zatsepin
Advice for preparing for an LCLS beamtime, especially for data analysts.
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2. During your beamtime
21 Jul 2015 | Series | Contributor(s): Nadia Zatsepin
Important tasks for data analysts during the LCLS beamtime.
Explanation of LCLS eLog.
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3. Accessing your data
21 Jul 2015 | Series | Contributor(s): Nadia Zatsepin
Where is your LCLS data? How long will it be there?
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5. Data reduction and hit finding
21 Jul 2015 | Series | Contributor(s): Nadia Zatsepin, Richard A Kirian
LCLS data reduction and hit finding. Running Cheetah at LCLS. Tuning hit finding parameters and understanding Cheetah's output.
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Data Analysis Scripts
21 Jul 2015 | Downloads
A repository of useful scripts for the analysis of XFEL data.
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6. Live data monitoring and interactive hit finding refinement: OnDA
21 Jul 2015 | Series | Contributor(s): Nadia Zatsepin
OnDA - live data monitoring and interactive hit finding refinement
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9. Indexing, merging, evaluation crystal diffraction data: CrystFEL
21 Jul 2015 | Series | Contributor(s): Nadia Zatsepin
Indexing, merging, evaluation serial crystallography data
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4. Detectors and geometry
21 Jul 2015 | Series | Contributor(s): Nadia Zatsepin
CXI detectors and geometry
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7. Working with LCLS data remotely
21 Jul 2015 | Series | Contributor(s): Nadia Zatsepin
Working with LCLS data remotely
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8. Managing and copying LCLS data
21 Jul 2015 | Series | Contributor(s): Nadia Zatsepin
LCLS data management and transfer.
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Crystallography with an XFEL
21 Jul 2015 | Seminars | Contributor(s): Marc Messerschmidt
Dr. Marc Messerschmidt discusses the design and operation of the X-ray free electron laser at the LCLS. Be sure to grab the attached MP3 audio file to follow along. Topics discussed include: - XFEL fundamentals - LCLS machine capabilities and energy spectrum - Beamlines and instrumentation for …
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Introduction to serial femtosecond crystallography data analysis
21 Jul 2015 | Series | Contributor(s): Nadia Zatsepin, Tom Grant
Introduction to serial femtosecond crystallography (SFX) with X-ray free electron lasers.
Presentation on software for SFX.
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2015 Phenix Workshop at Rice University
03 Apr 2015 | Workshops | Contributor(s): Tom Grant, George Phillips
The Gulf Coast Consortia, BioXFEL, and Rice University present an instructional workshop on Phenix, the Python-based Hierarchical Environment for Intergrated Xtallography. Topics include experimental phasing, molecular replacement, model refinement and structure validation.
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2014 Data Analysis Workshop
26 Aug 2014 | Workshops | Contributor(s): Tom Grant, Nadia Zatsepin
Video and interactive web presentations with PDF slides available for download. Description Serial crystallography is a rapidly growing field with a correspondingly rapidly growing user base. One of the main bottlenecks in serial crystallography is the ability to efficiently filter and analyze …