LCLS serial femtosecond crystallography data analysis instructions

By Nadia Zatsepin

Arizona State University

In This Series

  1. Cheetah documentation page 2

    23 Jul 2015 | Series | Contributor(s): Nadia Zatsepin, Richard Kirian

    Cheetah documentation Page 2. Click here for Page 1. Click here for a list of all keywords.  The official Cheetah website is http://www.desy.de/~barty/cheetah/   These pages will not reproduce all the content from the Cheetah site, but are meant as an addendum.   Running Cheetah …

  2. Cheetah documentation

    21 Jul 2015 | Series | Contributor(s): Nadia Zatsepin

    What is Cheetah and how do you use it?

  3. Cheetah documentation - all keywords

    21 Jul 2015 | Series | Contributor(s): Richard Kirian, Nadia Zatsepin

    List of all Cheetah's keywords

  4. 1. Before your beamtime

    21 Jul 2015 | Series | Contributor(s): Nadia Zatsepin

    Advice for preparing for an LCLS beamtime, especially for data analysts.

  5. 2. During your beamtime

    21 Jul 2015 | Series | Contributor(s): Nadia Zatsepin

    Important tasks for data analysts during the LCLS beamtime.  Explanation of LCLS eLog.

  6. 3. Accessing your data

    21 Jul 2015 | Series | Contributor(s): Nadia Zatsepin

    Where is your LCLS data? How long will it be there? 

  7. 5. Data reduction and hit finding

    21 Jul 2015 | Series | Contributor(s): Nadia Zatsepin, Richard A Kirian

    LCLS data reduction and hit finding. Running Cheetah at LCLS. Tuning hit finding parameters and understanding Cheetah's output.

  8. Data Analysis Scripts

    21 Jul 2015 | Downloads

    A repository of useful scripts for the analysis of XFEL data. 

  9. 6. Live data monitoring and interactive hit finding refinement: OnDA

    21 Jul 2015 | Series | Contributor(s): Nadia Zatsepin

    OnDA - live data monitoring and interactive hit finding refinement

  10. 9. Indexing, merging, evaluation crystal diffraction data: CrystFEL

    21 Jul 2015 | Series | Contributor(s): Nadia Zatsepin

    Indexing, merging, evaluation serial crystallography data

  11. 4. Detectors and geometry

    21 Jul 2015 | Series | Contributor(s): Nadia Zatsepin

    CXI detectors and geometry

  12. 7. Working with LCLS data remotely

    21 Jul 2015 | Series | Contributor(s): Nadia Zatsepin

    Working with LCLS data remotely

  13. 8. Managing and copying LCLS data

    21 Jul 2015 | Series | Contributor(s): Nadia Zatsepin

    LCLS data management and transfer.

  14. Crystallography with an XFEL

    21 Jul 2015 | Seminars | Contributor(s): Marc Messerschmidt

    Dr. Marc Messerschmidt discusses the design and operation of the X-ray free electron laser at the LCLS. Be sure to grab the attached MP3 audio file to follow along. Topics discussed include: - XFEL fundamentals - LCLS machine capabilities and energy spectrum - Beamlines and instrumentation for …

  15. Introduction to serial femtosecond crystallography data analysis

    21 Jul 2015 | Series | Contributor(s): Nadia Zatsepin, Tom Grant

    Introduction to serial femtosecond crystallography (SFX) with X-ray free electron lasers.  Presentation on software for SFX. 

  16. 2015 Phenix Workshop at Rice University

    03 Apr 2015 | Workshops | Contributor(s): Tom Grant, George Phillips

    The Gulf Coast Consortia, BioXFEL, and Rice University present an instructional workshop on Phenix, the Python-based Hierarchical Environment for Intergrated Xtallography. Topics include experimental phasing, molecular replacement, model refinement and structure validation.

  17. 2014 Data Analysis Workshop

    26 Aug 2014 | Workshops | Contributor(s): Tom Grant, Nadia Zatsepin

    Video and interactive web presentations with PDF slides available for download. Description Serial crystallography is a rapidly growing field with a correspondingly rapidly growing user base. One of the main bottlenecks in serial crystallography is the ability to efficiently filter and analyze …