BioXFEL is sponsoring a remote Phase Retrieval Workshop Monday, October 18 through Tuesday, October 19 2021. The workshop will feature a mix of lectures and virtual demonstrations delivered by BioXFEL staff, scholars, and collaborators. Please fill in the form below to register. A Zoom meeting access code will be emailed out before the start of the meeting.
This is a two-day online event delivered to an international audience. On the first day we will have a teaching session where we cover the basic math, physics, algorithms, and biological applications of phase retrieval methods. This will be a hands-on experience intended to teach those interested in learning more about coding and running phase retrieval programs. Day 2 will be focused on research talks presented by invited speakers discussing their current results pertaining to phase retrieval.
Invited Speakers and Lecturers:
Joe Chen (ASU) Organizer
Jeffrey Donatelli (LBNL) Organizer
Kanupriya Pande (LBNL) Organizer
Zixi Hu (LBNL)
Rainier Mobley (ASU)
Rick Kirian (ASU)
Tom Grant (UB)
Elijah Gonzalez (Rice University)
George Phillips (Rice University)
Sabine Botha (ASU)
Dorothee Liebschner (LBNL)
Iris Chang (SLAC)
Please Register for this event by completing the form [ HERE ]
Phase Retrieval Workshop 2021
Final program *Day 1 = Mon 18 Oct US = Tue 19 Oct NZ
Day 1* Teaching
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Time (Christchurch, GMT+13)
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Time
(San Francisco, PDT, GMT-7)
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Time (Hamburg, GMT+2)
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Topic
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Speaker
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0600 - 0605
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1000 - 1005
|
1900 - 1905
|
Welcome and Introduction
|
Joe Chen
|
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0605 - 0650
|
1005 - 1050
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1905 - 1950
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Physics and Fourier optics
|
Rick Kirian
|
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0650 - 0730
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1050 - 1130
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1950 - 2030
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Coherent Diffractive Imaging and Phase Retrieval Algorithms
|
Jeff Donatelli
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0730 - 0800
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1130 - 1200
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2030 - 2100
|
Basic phasing with Python Hands-on tutorial
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Joe Chen
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0800 - 0900
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1200 - 1300
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2100 - 2200
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Break (1 hr)
Basic introduction to crystallography for those who need it.
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Joe Chen
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0900 - 0940
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1300 - 1340
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2200 - 2240
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Crystallographic phasing (MAD/SAD)
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Sabine Botha
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0940 - 1020
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1340 - 1420
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2240 - 2320
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Crystallographic phasing (MR/Direct method)
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George Phillips
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1020 - 1050
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1420 - 1450
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2320 - 2350
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The discrete Fourier transform and the phase problem for 2D and 1D crystals
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Rick Millane
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1050 - 1100
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1450 - 1500
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2350 - 0000
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Trivia/Quiz
|
Joe Chen
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Day 2 Research Talks- Confirmed speakers
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Time (Christchurch, GMT +13)
|
Time
(San Francisco PDT, GMT -7)
|
Time (Hamburg, GMT +2)
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Title
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Speaker
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Affiliation
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0600 - 0630
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1000 - 1030
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1900 - 1930
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Multi-tiered iterative phasing for solving complex inverse problems
|
Jeff Donatelli
|
LBNL
|
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0630 - 0700
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1030 - 1100
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1930 - 2000
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A mathematical algorithm for estimating rotational diffusion coefficient from X-ray photon correlation spectroscopy data
|
Zixi Hu
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LBNL
|
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0700 - 0730
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1100 - 1130
|
2000 - 2030
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Scaling and accelerating algorithms for single-particle imaging
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Iris Chang
|
Stanford
|
|
0730 - 0800
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1130 - 1200
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2030 - 2100
|
The Monte Carlo expand-maximize-compress algorithm
|
Benjamin Mobely
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ASU
|
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0800 - 0900
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1200 - 1300
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2100 - 2200
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Break (1 hr)
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|
|
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0900 - 0930
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1300 - 1330
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2200 - 2230
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Phase retrieval for 1D solution scattering profiles
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Tom Grant
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University at Buffalo
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0930 - 1000
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1330 - 1400
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2230 - 2300
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Ab initio structure determination from fluctuation x-ray scattering
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Kanupriya Pande
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LBNL
|
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1000 - 1030
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1400 - 1430
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2300 - 2330
|
Ab initio phasing of high solvent content crystals using a hybrid input-output algorithm
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Elijah Gonzalez
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Rice University
|
|
1030 - 1100
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1430 - 1500
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2330 - 0000
|
Phase determination in Macromolecular crystallography with Phenix
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Dorothee Liebschner
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LBNL
|
Completion certificates will be available upon request.
Any questions should be directed to Bill Bauer
Sponsored by BioXFEL and Middle Earth Productions |
