Publications by BioXFEL Researchers Since Start of BioXFEL Grant

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Acknowledges BioXFEL NSF-STC
   
Authors: Junhyung Kim, Sojin Moon, Tod D. Romo, Yifei Yang, Euiyoung Bae, George N. Phillips
Citation: Kim, J., Moon, S., Romo, T. D., Yang, Y., Bae, E., & Phillips, G. N. (2024). Conformational dynamics of adenylate kinase in crystals. Structural Dynamics, 11(1). https://doi.org/10.1063/4.0000205
Type: Journal-article
Authors: Gihan Ketawala, Caitlin M. Reiter, Petra Fromme, Sabine Botha
Citation: Ketawala, G., Reiter, C. M., Fromme, P., & Botha, S. (2024). The Pixel Anomaly Detection Tool: a user-friendly GUI for classifying detector frames using machine-learning approaches. Journal of Applied Crystallography, 57(2). https://doi.org/10.1107/s1600576724000116
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Tong Wang, Weiwei He, Suzette A. Pabit, Serdal Kirmizialtin, Lois Pollack
Citation: Wang, T., He, W., Pabit, S. A., Kirmizialtin, S., & Pollack, L. (2024). Sequence-dependent conformational preferences of disordered single-stranded RNA. Biophysical Journal, 123(3), 453a-454a. https://doi.org/10.1016/j.bpj.2023.11.2762
Type: Journal-article
Authors: Eric R. Greene, Richard Muniz, Hiroki Yamamura, Samuel Hoff, Angelika Arada, Priyanka Bajaj, Daphne Chen, John D. Lee, Massimiliano Bonomi, Justin M. Kollman, James Fraser
Citation: Greene, E. R., Muniz, R., Yamamura, H., Hoff, S., Arada, A., Bajaj, P., Chen, D., Lee, J. D., Bonomi, M., Kollman, J. M., & Fraser, J. (2024). Product-stabilized filamentation by human glutamine synthetase allosterically tunes activity. Biophysical Journal, 123(3), 352a. https://doi.org/10.1016/j.bpj.2023.11.2135
Type: Journal-article
Authors: Matthew P. Hancock, James S. Fraser, Andrej Sali
Citation: Hancock, M. P., Fraser, J. S., & Sali, A. (2024). Computing a Bayesian multi-state model of a protein structure from an X-ray diffraction pattern. Biophysical Journal, 123(3), 200a-201a. https://doi.org/10.1016/j.bpj.2023.11.1276
Type: Journal-article
Authors: Samuel Hoff, Massimiliano Bonomi, James Fraser, Eric Greene
Citation: Hoff, S., Bonomi, M., Fraser, J., & Greene, E. (2024). Extracting conformational heterogeneity from 2D and 3D cryo-EM data. Biophysical Journal, 123(3), 50a-51a. https://doi.org/10.1016/j.bpj.2023.11.376
Type: Journal-article
Authors: Marius Schmidt, Emina A. Stojković
Citation: Schmidt, M., & Stojković, E. A. (2024). Blue and red in the protein world: Photoactive yellow protein and phytochromes as revealed by time-resolved crystallography. Structural Dynamics, 11(1). https://doi.org/10.1063/4.0000233
Type: Journal-article
Authors: Marius Schmidt
Citation: Schmidt, M. (2023). Time-resolved Crystallography on Protein Photoreceptors and Enzymes. Integrated Structural Biology, 203-240. https://doi.org/10.1039/bk9781837670154-00203
Type: Book-chapter
Authors: Edwin G. Peña-Martínez, Diego A. Pomales-Matos, Alejandro Rivera-Madera, Jean L. Messon-Bird, Joshua G. Medina-Feliciano, Leandro Sanabria-Alberto, Adriana C. Barreiro-Rosario, Jeancarlos Rivera-Del Valle, Jessica M. Rodríguez-Ríos, José A. Rodríguez-Martínez
Citation: Peña-Martínez, E. G., Pomales-Matos, D. A., Rivera-Madera, A., Messon-Bird, J. L., Medina-Feliciano, J. G., Sanabria-Alberto, L., Barreiro-Rosario, A. C., Rivera-Del Valle, J., Rodríguez-Ríos, J. M., & Rodríguez-Martínez, J. A. (2023). Prioritizing cardiovascular disease-associated variants altering NKX2-5 and TBX5 binding through an integrative computational approach. Journal of Biological Chemistry, 299(12), 105423. https://doi.org/10.1016/j.jbc.2023.105423
Type: Journal-article
Authors: Andreas Varkaris, Ermira Pazolli, Hakan Gunaydin, Qi Wang, Levi Pierce, Alessandro A. Boezio, Artemisa Bulku, Lucian DiPietro, Cary Fridrich, Adam Frost, Fabrizio Giordanetto, Erika P. Hamilton, Katherine Harris, Michael Holliday, Tamieka L. Hunter, Amanda Iskandar, Yongli Ji, Alexandre Larivée, Jonathan R. LaRochelle, André Lescarbeau, Fabien Llambi, Brenda Lormil, Mary M. Mader, Brenton G. Mar, Iain Martin, Thomas H. McLean, Klaus Michelsen, Yakov Pechersky, Erika Puente-Poushnejad, Kevin Raynor, Dipali Rogala, Ramin Samadani, Alison M. Schram, Kelley Shortsleeves, Sweta Swaminathan, Shahein Tajmir, Gege Tan, Yong Tang, Roberto Valverde, Bryan Wehrenberg, Jeremy Wilbur, Bret R. Williams, Hongtao Zeng, Hanmo Zhang, W. Patrick Walters, Beni B. Wolf, David E. Shaw, Donald A. Bergstrom, James Watters, James S. Fraser, Pascal D. Fortin, D. Randal Kipp
Citation: Varkaris, A., Pazolli, E., Gunaydin, H., Wang, Q., Pierce, L., Boezio, A. A., Bulku, A., DiPietro, L., Fridrich, C., Frost, A., Giordanetto, F., Hamilton, E. P., Harris, K., Holliday, M., Hunter, T. L., Iskandar, A., Ji, Y., Larivée, A., LaRochelle, J. R., ... Kipp, D. R. (2023). Discovery and Clinical Proof-of-Concept of RLY-2608, a First-in-Class Mutant-Selective Allosteric PI3Kα Inhibitor That Decouples Antitumor Activity from Hyperinsulinemia. Cancer Discovery, 14(2), 240-257. https://doi.org/10.1158/2159-8290.cd-23-0944
Type: Journal-article
Authors: Rafael Maldonado‐Hernández, Orestes Quesada, José A. González‐Feliciano, Abel Baerga‐Ortiz, José A. Lasalde‐Dominicci
Citation: Maldonado‐Hernández, R., Quesada, O., González‐Feliciano, J. A., Baerga‐Ortiz, A., & Lasalde‐Dominicci, J. A. (2023). Identification of the native Torpedo californica nicotinic acetylcholine receptor's glycan composition after a multi‐step sequential purification method using MALDI‐ToF MS. PROTEOMICS, 24(1-2). Portico. https://doi.org/10.1002/pmic.202300151
Type: Journal-article
Authors: Mehmet Gul, Busra Yuksel, Huri Bulut, Hasan DeMirci
Citation: Gul, M., Yuksel, B., Bulut, H., & DeMirci, H. (2023). Structural analysis of wild-type and Val120Thr mutant Candida boidinii formate dehydrogenase by X-ray crystallography. Acta Crystallographica Section D Structural Biology, 79(11), 1010-1017. https://doi.org/10.1107/s2059798323008070
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Weiwei He, Josue San Emeterio, Michael T Woodside, Serdal Kirmizialtin, Lois Pollack
Citation: He, W., San Emeterio, J., Woodside, M. T., Kirmizialtin, S., & Pollack, L. (2023). Atomistic structure of the SARS-CoV-2 pseudoknot in solution from SAXS-driven molecular dynamics. Nucleic Acids Research, 51(20), 11332-11344. https://doi.org/10.1093/nar/gkad809
Type: Journal-article
Authors: Kara A. Zielinski, Shuo Sui, Suzette A. Pabit, Daniel A. Rivera, Tong Wang, Qingyue Hu, Maithri M. Kashipathy, Stella Lisova, Chris B. Schaffer, Valerio Mariani, Mark S. Hunter, Christopher Kupitz, Frank R. Moss, Frédéric P. Poitevin, Thomas D. Grant, Lois Pollack
Citation: Zielinski, K. A., Sui, S., Pabit, S. A., Rivera, D. A., Wang, T., Hu, Q., Kashipathy, M. M., Lisova, S., Schaffer, C. B., Mariani, V., Hunter, M. S., Kupitz, C., Moss, F. R., Poitevin, F. P., Grant, T. D., & Pollack, L. (2023). RNA structures and dynamics with ... resolution revealed by x-ray free-electron lasers. Science Advances, 9(39). https://doi.org/10.1126/sciadv.adj3509
Type: Journal-article
Authors: Edward H. Snell, Elspeth F. Garman, Geoff W. Grime, Aina E. Cohen, Sarah E. J. Bowman
Citation: Snell, E. H., Garman, E. F., Grime, G. W., Cohen, A. E., & Bowman, S. E. J. (2023). The mythical metal - insights on the accuracy of metal identification in structural biology. Acta Crystallographica Section A Foundations and Advances, 79(a1), a281-a281. https://doi.org/10.1107/s2053273323097188
Type: Journal-article
Authors: Zhongrui Liu, Kevin K. Gu, Megan L. Shelby, Deepshika Gilbile, Artem Y. Lyubimov, Silvia Russi, Aina E. Cohen, Sankar Raju Narayanasamy, Sabine Botha, Christopher Kupitz, Raymond G. Sierra, Fredric Poitevin, Antonio Gilardi, Stella Lisova, Matthew A. Coleman, Matthias Frank, Tonya L. Kuhl
Citation: Liu, Z., Gu, K. K., Shelby, M. L., Gilbile, D., Lyubimov, A. Y., Russi, S., Cohen, A. E., Narayanasamy, S. R., Botha, S., Kupitz, C., Sierra, R. G., Poitevin, F., Gilardi, A., Lisova, S., Coleman, M. A., Frank, M., & Kuhl, T. L. (2023). A user-friendly plug-and-play cyclic olefin copolymer-based microfluidic chip for room-temperature, fixed-target serial crystallography. Acta Crystallographica Section D Structural Biology, 79(10), 944-952. https://doi.org/10.1107/s2059798323007027
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Alexander M. Wolff, Eriko Nango, Iris D. Young, Aaron S. Brewster, Minoru Kubo, Takashi Nomura, Michihiro Sugahara, Shigeki Owada, Benjamin A. Barad, Kazutaka Ito, Asmit Bhowmick, Sergio Carbajo, Tomoya Hino, James M. Holton, Dohyun Im, Lee J. O’Riordan, Tomoyuki Tanaka, Rie Tanaka, Raymond G. Sierra, Fumiaki Yumoto, Kensuke Tono, So Iwata, Nicholas K. Sauter, James S. Fraser, Michael C. Thompson
Citation: Wolff, A. M., Nango, E., Young, I. D., Brewster, A. S., Kubo, M., Nomura, T., Sugahara, M., Owada, S., Barad, B. A., Ito, K., Bhowmick, A., Carbajo, S., Hino, T., Holton, J. M., Im, D., O'Riordan, L. J., Tanaka, T., Tanaka, R., Sierra, R. G., ... Thompson, M. C. (2023). Mapping protein dynamics at high spatial resolution with temperature-jump X-ray crystallography. Nature Chemistry. https://doi.org/10.1038/s41557-023-01329-4
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Ámbar M. Alsina-Sánchez, Sebastián Montalvo-Vázquez, Nilmary Grafals-Ruiz, Carmen Acosta, Emily M. Ormé, Israel Rodríguez, Sara M. Delgado-Rivera, Arthur D. Tinoco, Suranganie Dharmawardhane, Ingrid C. Montes-González
Citation: Alsina-Sánchez, Á. M., Montalvo-Vázquez, S., Grafals-Ruiz, N., Acosta, C., Ormé, E. M., Rodríguez, I., Delgado-Rivera, S. M., Tinoco, A. D., Dharmawardhane, S., & Montes-González, I. C. (2023). Synthesis of Novel Heterocyclic Ferrocenyl Chalcones and Their Biological Evaluation. ACS Omega. https://doi.org/10.1021/acsomega.3c01830
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Izumi Ishigami, Sergio Carbajo, Nadia Zatsepin, Masahide Hikita, Chelsie E. Conrad, Garrett Nelson, Jesse Coe, Shibom Basu, Thomas Grant, Matthew H. Seaberg, Raymond G. Sierra, Mark S. Hunter, Petra Fromme, Raimund Fromme, Denis L. Rousseau, Syun-Ru Yeh
Citation: Ishigami, I., Carbajo, S., Zatsepin, N., Hikita, M., Conrad, C. E., Nelson, G., Coe, J., Basu, S., Grant, T., Seaberg, M. H., Sierra, R. G., Hunter, M. S., Fromme, P., Fromme, R., Rousseau, D. L., & Yeh, S.-R. (2023). Detection of a Geminate Photoproduct of Bovine Cytochrome c Oxidase by Time-Resolved Serial Femtosecond Crystallography. Journal of the American Chemical Society. https://doi.org/10.1021/jacs.3c07803
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Do-Hyun Kim, Yilin Wang, Haerin Jung, Rachael L. Field, Xinya Zhang, Ta-Chiang Liu, Changqing Ma, James S. Fraser, Jonathan R. Brestoff, Steven J. Van Dyken
Citation: Kim, D.-H., Wang, Y., Jung, H., Field, R. L., Zhang, X., Liu, T.-C., Ma, C., Fraser, J. S., Brestoff, J. R., & Van Dyken, S. J. (2023). A type 2 immune circuit in the stomach controls mammalian adaptation to dietary chitin. Science, 381(6662), 1092-1098. https://doi.org/10.1126/science.add5649
Type: Journal-article
Authors: Tek Narsingh Malla, Kara Zielinski, Luis Aldama, Sasa Bajt, Denisse Feliz, Brendon Hayes, Mark Hunter, Christopher Kupitz, Stella Lisova, Juraj Knoska, Jose Manuel Martin-Garcia, Valerio Mariani, Suraj Pandey, Ishwor Poudyal, Raymond G. Sierra, Alexandra Tolstikova, Oleksandr Yefanov, Chung Hong Yoon, Abbas Ourmazd, Petra Fromme, Peter Schwander, Anton Barty, Henry N. Chapman, Emina A. Stojkovic, Alexander Batyuk, Sébastien Boutet, George N. Phillips, Lois Pollack, Marius Schmidt
Citation: Malla, T. N., Zielinski, K., Aldama, L., Bajt, S., Feliz, D., Hayes, B., Hunter, M., Kupitz, C., Lisova, S., Knoska, J., Martin-Garcia, J. M., Mariani, V., Pandey, S., Poudyal, I., Sierra, R. G., Tolstikova, A., Yefanov, O., Yoon, C. H., Ourmazd, A., ... Schmidt, M. (2023). Heterogeneity in M. tuberculosis β-lactamase inhibition by Sulbactam. Nature Communications, 14(1). https://doi.org/10.1038/s41467-023-41246-1
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Taha Y. Taha, Rahul K. Suryawanshi, Irene P. Chen, Galen J. Correy, Maria McCavitt-Malvido, Patrick C. O’Leary, Manasi P. Jogalekar, Morgan E. Diolaiti, Gabriella R. Kimmerly, Chia-Lin Tsou, Ronnie Gascon, Mauricio Montano, Luis Martinez-Sobrido, Nevan J. Krogan, Alan Ashworth, James S. Fraser, Melanie Ott
Citation: Taha, T. Y., Suryawanshi, R. K., Chen, I. P., Correy, G. J., McCavitt-Malvido, M., O'Leary, P. C., Jogalekar, M. P., Diolaiti, M. E., Kimmerly, G. R., Tsou, C.-L., Gascon, R., Montano, M., Martinez-Sobrido, L., Krogan, N. J., Ashworth, A., Fraser, J. S., & Ott, M. (2023). A single inactivating amino acid change in the SARS-CoV-2 NSP3 Mac1 domain attenuates viral replication in vivo. PLOS Pathogens, 19(8), e1011614. https://doi.org/10.1371/journal.ppat.1011614
Type: Journal-article
Authors: Domin Koh, Mukul Sonker, Edgar A. Arriaga, Alexandra Ros
Citation: Koh, D., Sonker, M., Arriaga, E. A., & Ros, A. (2023). Numerical modeling reveals improved organelle separation for dielectrophoretic ratchet migration. ELECTROPHORESIS. Portico. https://doi.org/10.1002/elps.202300091
Type: Journal-article
Authors: Marius Schmidt
Citation: Schmidt, M. (2023). Practical considerations for the analysis of time-resolved x-ray data. Structural Dynamics, 10(4). https://doi.org/10.1063/4.0000196
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Hasan DeMirci, J Johnson, Bradley Tolar, Bilge Tosun, Yasuo Yoshikuni, Christopher Francis, Soichi Wakatsuki
Citation: DeMirci, H., Johnson, J., Tolar, B., Tosun, B., Yoshikuni, Y., Francis, C., & Wakatsuki, S. (2023). Crystal Structure of 4-Hydroxybutyryl-CoA Synthetase (ADP-forming): A Key Enzyme in the Thaumarchaeal Hydroxypropionate/Hydroxybutyrate cycle. https://doi.org/10.21203/rs.3.rs-3173078/v1
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Siyuan Du, Stephanie A. Wankowicz, Filip Yabukarski, Tzanko Doukov, Daniel Herschlag, James S. Fraser
Citation: Du, S., Wankowicz, S. A., Yabukarski, F., Doukov, T., Herschlag, D., & Fraser, J. S. (2023). Refinement of multiconformer ensemble models from multi-temperature X-ray diffraction data. Methods in Enzymology. https://doi.org/10.1016/bs.mie.2023.06.009
Type: Book-chapter
Authors: Tom Pan, Shikai Jin, Mitchell D. Miller, Anastasios Kyrillidis, George N. Phillips
Citation: Pan, T., Jin, S., Miller, M. D., Kyrillidis, A., & Phillips, G. N. (2023). A deep learning solution for crystallographic structure determination. IUCrJ, 10(4), 487-496. https://doi.org/10.1107/s2052252523004293
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Mehmet Gul, Esra Ayan, Ebru Destan, J. Austin Johnson, Alaleh Shafiei, Abdullah Kepceoğlu, Merve Yilmaz, Fatma Betül Ertem, İlkin Yapici, Bilge Tosun, Nilüfer Baldir, Nurettin Tokay, Zeliş Nergiz, Gözde Karakadioğlu, Seyide Seda Paydos, Cahine Kulakman, Cengiz Kaan Ferah, Ömür Güven, Necati Atalay, Enver Kamil Akcan, Haluk Cetinok, Nazlı Eylül Arslan, Kardelen Şabanoğlu, Bengisu Aşci, Serra Tavli, Helin Gümüsboğa, Sevde Altuntaş, Masami Otsuka, Mikako Fujita, Şaban Teki̇n, Halilibrahim Çi̇ftçi̇, Serdar Durdaği, Ezgi Karaca, Burcu Kaplan Türköz, Burak Veli Kabasakal, Ahmet Kati, Hasan DeMi̇rci̇
Citation: Gul, M., Ayan, E., Destan, E., Johnson, J. A., Shafiei, A., Kepceoğlu, A., Yilmaz, M., Ertem, F. B., Yapici, İ., Tosun, B., Baldir, N., Tokay, N., Nergiz, Z., Karakadioğlu, G., Paydos, S. S., Kulakman, C., Ferah, C. K., Güven, -., Atalay, N., ... DeMi̇rci̇, H. (2023). Rapid and efficient ambient temperature X-ray crystal structure determination at Turkish Light Source. Scientific Reports, 13(1). https://doi.org/10.1038/s41598-023-33989-0
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Kara A. Zielinski, Andrea M. Katz, George D. Calvey, Suzette A. Pabit, Shawn K. Milano, Cody Aplin, Josue San Emeterio, Richard A. Cerione, Lois Pollack
Citation: Zielinski, K. A., Katz, A. M., Calvey, G. D., Pabit, S. A., Milano, S. K., Aplin, C., San Emeterio, J., Cerione, R. A., & Pollack, L. (2023). Chaotic advection mixer for capturing transient states of diverse biological macromolecular systems with time-resolved small-angle X-ray scattering. IUCrJ, 10(3), 363-375. https://doi.org/10.1107/s2052252523003482
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Aixa M. Orta-Rivera, Yazmary Meléndez-Contés, Nataniel Rivera-Berríos, Adriana M. Gómez-Cardona, Andrés Ramos-Rodríguez, Claudia Cruz-Santiago, Christian González-Dumeng, Janangelis López, Jansteven Escribano, Jared J. Rivera-Otero, Josean Díaz-Rivera, Sebastián C. Díaz-Vélez, Zulemaría Feliciano-Delgado, Arthur D. Tinoco
Citation: Orta-Rivera, A. M., Meléndez-Contés, Y., Rivera-Berríos, N., Gómez-Cardona, A. M., Ramos-Rodríguez, A., Cruz-Santiago, C., González-Dumeng, C., López, J., Escribano, J., Rivera-Otero, J. J., Díaz-Rivera, J., Díaz-Vélez, S. C., Feliciano-Delgado, Z., & Tinoco, A. D. (2023). Copper Based Antibacterial Compounds: Potential Targeting Pathways and Current Drug Design Trends. https://doi.org/10.20944/preprints202304.1124.v1
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: J.P.J. Chen, K. Pande, J.J. Donatelli, A.V. Martin, K. Ayyer, H.N. Chapman, R. Bean, K.E. Schmidt, R.A. Kirian
Citation: Chen, J. P. J., Pande, K., Donatelli, J. J., Martin, A. V., Ayyer, K., Chapman, H. N., Bean, R., Schmidt, K. E., & Kirian, R. A. (2023). Inter-Bragg crystallographic phase retrieval from shape transforms, stacking faults and substitutional disorder. Ultramicroscopy, 249, 113728. https://doi.org/10.1016/j.ultramic.2023.113728
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: C. Casadei, A. Hosseinizadeh, G. Schertler, A. Ourmazd, R. Santra
Citation: Casadei, C., Hosseinizadeh, A., Schertler, G., Ourmazd, A., & Santra, R. (2022). Randomness in time-resolved serial crystallography data: alternatives to the binning and averaging approach. Acta Crystallographica Section A Foundations and Advances, 78(a2), e111-e111. https://doi.org/10.1107/s2053273322095742
Type: Journal-article
Authors: Sarthak Saha, Can Özden, Alfred Samkutty, Silvia Russi, Aina Cohen, Margaret M. Stratton, Sarah L. Perry
Citation: Saha, S., -zden, C., Samkutty, A., Russi, S., Cohen, A., Stratton, M. M., & Perry, S. L. (2023). Polymer-based microfluidic device for on-chip counter-diffusive crystallization and in situ X-ray crystallography at room temperature. Lab on a Chip, 23(8), 2075-2090. https://doi.org/10.1039/d2lc01194h
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Steve P. Meisburger, David A. Case, Nozomi Ando
Citation: Meisburger, S. P., Case, D. A., & Ando, N. (2023). Robust total X-ray scattering workflow to study correlated motion of proteins in crystals. Nature Communications, 14(1). https://doi.org/10.1038/s41467-023-36734-3
Type: Journal-article
Authors: Miranda L. Lynch, M. Elizabeth Snell, Stephen A. Potter, Edward H. Snell, Sarah E. J. Bowman
Citation: Lynch, M. L., Snell, M. E., Potter, S. A., Snell, E. H., & Bowman, S. E. J. (2023). 20 years of crystal hits: progress and promise in ultrahigh-throughput crystallization screening. Acta Crystallographica Section D Structural Biology, 79(3), 198-205. https://doi.org/10.1107/s2059798323001274
Type: Journal-article
Authors: Christian B. Macdonald, David Nedrud, Patrick Rockefeller Grimes, Donovan Trinidad, James S. Fraser, Willow Coyote-Maestas
Citation: Macdonald, C. B., Nedrud, D., Grimes, P. R., Trinidad, D., Fraser, J. S., & Coyote-Maestas, W. (2023). DIMPLE: deep insertion, deletion, and missense mutation libraries for exploring protein variation in evolution, disease, and biology. Genome Biology, 24(1). https://doi.org/10.1186/s13059-023-02880-6
Type: Journal-article
Authors: Marius Schmidt
Citation: Schmidt, M. (2023). Biological function investigated by time-resolved structure determination. Structural Dynamics, 10(1), 010901. https://doi.org/10.1063/4.0000177
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: David Freeman, Dimitrios Giannakis, Brian Mintz, Abbas Ourmazd, Joanna Slawinska
Citation: Freeman, D., Giannakis, D., Mintz, B., Ourmazd, A., & Slawinska, J. (2023). Data assimilation in operator algebras. Proceedings of the National Academy of Sciences, 120(8). https://doi.org/10.1073/pnas.2211115120
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Eric R. Greene, Richard Muniz, Angelika Arada, D. John Lee, Daphne Chen, Erin Thompson, Hiroki Yamamura, Justin M. Kollman, James Fraser
Citation: Greene, E. R., Muniz, R., Arada, A., Lee, D. J., Chen, D., Thompson, E., Yamamura, H., Kollman, J. M., & Fraser, J. (2023). Reaction coordinate dependent fibrillar formation of human glutamine synthetase tunes activity. Biophysical Journal, 122(3), 474a. https://doi.org/10.1016/j.bpj.2022.11.2541
Type: Journal-article
Authors: C. Swathi K. Menon, Konstantinos Karpos, Thomas D. Grant, Andrey V. Struts, Steven D.E. Fried, Suchithranga M.D.C. Perera, Irina V. Kosheleva, Leslie Salas-Estrada, Alan Grossfield, Petra Fromme, Richard A. Kirian, Michael F. Brown
Citation: Menon, C. S. K., Karpos, K., Grant, T. D., Struts, A. V., Fried, S. D. E., Perera, S. M. D. C., Kosheleva, I. V., Salas-Estrada, L., Grossfield, A., Fromme, P., Kirian, R. A., & Brown, M. F. (2023). X-ray scattering exhibits time-resolved view of rhodopsin activation. Biophysical Journal, 122(3), 191a. https://doi.org/10.1016/j.bpj.2022.11.1170
Type: Journal-article
Authors: Ali Madani, Ben Krause, Eric R. Greene, Subu Subramanian, Benjamin P. Mohr, James M. Holton, Jose Luis Olmos, Caiming Xiong, Zachary Z. Sun, Richard Socher, James S. Fraser, Nikhil Naik
Citation: Madani, A., Krause, B., Greene, E. R., Subramanian, S., Mohr, B. P., Holton, J. M., Olmos, J. L., Xiong, C., Sun, Z. Z., Socher, R., Fraser, J. S., & Naik, N. (2023). Large language models generate functional protein sequences across diverse families. Nature Biotechnology. https://doi.org/10.1038/s41587-022-01618-2
Type: Journal-article
Authors: Raison Dsouza, Ghoncheh Mashayekhi, Roshanak Etemadpour, Peter Schwander, Abbas Ourmazd
Citation: Dsouza, R., Mashayekhi, G., Etemadpour, R., Schwander, P., & Ourmazd, A. (2023). Energy landscapes from cryo-EM snapshots: a benchmarking study. Scientific Reports, 13(1). https://doi.org/10.1038/s41598-023-28401-w
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Rebecca J. Jernigan, Dhenugen Logeswaran, Diandra Doppler, Nirupa Nagaratnam, Mukul Sonker, Jay-How Yang, Gihan Ketawala, Jose M. Martin-Garcia, Megan L. Shelby, Thomas D. Grant, Valerio Mariani, Alexandra Tolstikova, Michelle Z. Sheikh, Mimi Cho Yung, Matthew A. Coleman, Sahba Zaare, Emily K. Kaschner, Mohammad Towshif Rabbani, Reza Nazari, Michele A. Zacks, Brandon Hayes, Raymond G. Sierra, Mark S. Hunter, Stella Lisova, Alexander Batyuk, Christopher Kupitz, Sebastien Boutet, Debra T. Hansen, Richard A. Kirian, Marius Schmidt, Raimund Fromme, Matthias Frank, Alexandra Ros, Julian J.-L. Chen, Sabine Botha, Petra Fromme
Citation: Jernigan, R. J., Logeswaran, D., Doppler, D., Nagaratnam, N., Sonker, M., Yang, J.-H., Ketawala, G., Martin-Garcia, J. M., Shelby, M. L., Grant, T. D., Mariani, V., Tolstikova, A., Sheikh, M. Z., Yung, M. C., Coleman, M. A., Zaare, S., Kaschner, E. K., Rabbani, M. T., Nazari, R., ... Fromme, P. (2023). Room-temperature structural studies of SARS-CoV-2 protein NendoU with an X-ray free-electron laser. Structure, 31(2), 138-151.e5. https://doi.org/10.1016/j.str.2022.12.009
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Stefan Gahbauer, Galen J. Correy, Marion Schuller, Matteo P. Ferla, Yagmur Umay Doruk, Moira Rachman, Taiasean Wu, Morgan Diolaiti, Siyi Wang, R. Jeffrey Neitz, Daren Fearon, Dmytro S. Radchenko, Yurii S. Moroz, John J. Irwin, Adam R. Renslo, Jenny C. Taylor, Jason E. Gestwicki, Frank von Delft, Alan Ashworth, Ivan Ahel, Brian K. Shoichet, James S. Fraser
Citation: Gahbauer, S., Correy, G. J., Schuller, M., Ferla, M. P., Doruk, Y. U., Rachman, M., Wu, T., Diolaiti, M., Wang, S., Neitz, R. J., Fearon, D., Radchenko, D. S., Moroz, Y. S., Irwin, J. J., Renslo, A. R., Taylor, J. C., Gestwicki, J. E., von Delft, F., Ashworth, A., ... Fraser, J. S. (2023). Iterative computational design and crystallographic screening identifies potent inhibitors targeting the Nsp3 macrodomain of SARS-CoV-2. Proceedings of the National Academy of Sciences, 120(2). https://doi.org/10.1073/pnas.2212931120
Type: Journal-article
Authors: Baris Cakilkaya, Ibrahim Halil Kavakli, Hasan DeMirci
Citation: Cakilkaya, B., Kavakli, I. H., & DeMirci, H. (2023). The crystal structure of Vibrio cholerae (6-4) photolyase reveals interactions with cofactors and a DNA-binding region. Journal of Biological Chemistry, 299(1), 102794. https://doi.org/10.1016/j.jbc.2022.102794
Type: Journal-article
Authors: Colin Gates, Gennady Ananyev, Shatabdi Roy-Chowdhury, Petra Fromme, G. Charles Dismukes
Citation: Gates, C., Ananyev, G., Roy-Chowdhury, S., Fromme, P., & Dismukes, G. C. (2022). Regulation of light energy conversion between linear and cyclic electron flow within photosystem II controlled by the plastoquinone/quinol redox poise. Photosynthesis Research. https://doi.org/10.1007/s11120-022-00985-w
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Sebastian Westenhoff, Petra Meszaros, Marius Schmidt
Citation: Westenhoff, S., Meszaros, P., & Schmidt, M. (2022). Protein motions visualized by femtosecond time-resolved crystallography: The case of photosensory vs photosynthetic proteins. Current Opinion in Structural Biology, 77, 102481. https://doi.org/10.1016/j.sbi.2022.102481
Type: Journal-article
Authors: Halilibrahim Ciftci, Belgin Sever, Esra Ayan, Mustafa Can, Hasan DeMirci, Masami Otsuka, Amaç Fatih TuYuN, Hiroshi Tateishi, Mikako Fujita
Citation: Ciftci, H., Sever, B., Ayan, E., Can, M., DeMirci, H., Otsuka, M., TuYuN, A. F., Tateishi, H., & Fujita, M. (2022). Identification of New L-Heptanoylphosphatidyl Inositol Pentakisphosphate Derivatives Targeting the Interaction with HIV-1 Gag by Molecular Modelling Studies. Pharmaceuticals, 15(10), 1255. https://doi.org/10.3390/ph15101255
Type: Journal-article
Authors: Jennifer M. Michaud, Ali Madani, James S. Fraser
Citation: Michaud, J. M., Madani, A., & Fraser, J. S. (2022). A language model beats alphafold2 on orphans. Nature Biotechnology, 40(11), 1576-1577. https://doi.org/10.1038/s41587-022-01466-0
Type: Journal-article
Authors: Mukul Sonker, Diandra Doppler, Ana Egatz-Gomez, Sahba Zaare, Mohammad T. Rabbani, Abhik Manna, Jorvani Cruz Villarreal, Garrett Nelson, Gihan K. Ketawala, Konstantinos Karpos, Roberto C. Alvarez, Reza Nazari, Darren Thifault, Rebecca Jernigan, Dominik Oberthür, Huijong Han, Raymond Sierra, Mark S. Hunter, Alexander Batyuk, Christopher J. Kupitz, Robert E. Sublett, Frederic Poitevin, Stella Lisova, Valerio Mariani, Alexandra Tolstikova, Sebastien Boutet, Marc Messerschmidt, J. Domingo Meza-Aguilar, Raimund Fromme, Jose M. Martin-Garcia, Sabine Botha, Petra Fromme, Thomas D. Grant, Richard A. Kirian, Alexandra Ros
Citation: Sonker, M., Doppler, D., Egatz-Gomez, A., Zaare, S., Rabbani, M. T., Manna, A., Cruz Villarreal, J., Nelson, G., Ketawala, G. K., Karpos, K., Alvarez, R. C., Nazari, R., Thifault, D., Jernigan, R., Oberthür, D., Han, H., Sierra, R., Hunter, M. S., Batyuk, A., ... Ros, A. (2022). Electrically stimulated droplet injector for reduced sample consumption in serial crystallography. Biophysical Reports, 2(4), 100081. https://doi.org/10.1016/j.bpr.2022.100081
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Kuan‐Lin Wu, Joshua A. Moore, Mitchell D. Miller, Yuda Chen, Catherine Lee, Weijun Xu, Zane Peng, Qinghui Duan, George N. Phillips, Rosa A. Uribe, Han Xiao
Citation: Wu, K., Moore, J. A., Miller, M. D., Chen, Y., Lee, C., Xu, W., Peng, Z., Duan, Q., Phillips, G. N., Uribe, R. A., & Xiao, H. (2022). Expanding the eukaryotic genetic code with a biosynthesized 21st amino acid. Protein Science, 31(10). Portico. https://doi.org/10.1002/pro.4443
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Josue San Emeterio, Suzette A. Pabit, Lois Pollack
Citation: San Emeterio, J., Pabit, S. A., & Pollack, L. (2022). Contrast variation SAXS: Sample preparation protocols, experimental procedures, and data analysis. Methods in Enzymology, 41-83. https://doi.org/10.1016/bs.mie.2022.08.007
Type: Book-chapter
Authors: Tong Wang, Suzette Pabit, Anja Henning-Knechtel, Weiwei He, Serdal Kirmizaltin, Lois Pollack
Citation: Wang, T., Pabit, S., Henning-Knechtel, A., He, W., Kirmizaltin, S., & Pollack, L. (2022). Determining the structural ensembles of disordered RNA and proteins using an integrated approach. Acta Crystallographica Section A Foundations and Advances, 78(a1), a168-a168. https://doi.org/10.1107/s205327332209831x
Type: Journal-article
Authors: Kara Zielinski, Andrea Katz, George Calvey, Suzette Pabit, Josue San Emeterio, Lois Pollack
Citation: Zielinski, K., Katz, A., Calvey, G., Pabit, S., San Emeterio, J., & Pollack, L. (2022). Chaotic advection mixer for capturing transient states of diverse biological macromolecular systems with time-resolved small-angle X-ray scattering. Acta Crystallographica Section A Foundations and Advances, 78(a1), a28-a28. https://doi.org/10.1107/s2053273322099715
Type: Journal-article
Authors: Cody Aplin, Shawn K. Milano, Kara A. Zielinski, Lois Pollack, Richard A. Cerione
Citation: Aplin, C., Milano, S. K., Zielinski, K. A., Pollack, L., & Cerione, R. A. (2022). Evolving Experimental Techniques for Structure-Based Drug Design. The Journal of Physical Chemistry B. https://doi.org/10.1021/acs.jpcb.2c04344
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Anna Shiriaeva, Daejin Park, Gyudong Kim, Yoonji Lee, Xiyan Hou, Dnyandev B. Jarhad, Gibae Kim, Jinha Yu, Young Eum Hyun, Woomi Kim, Zhan-Guo Gao, Kenneth A. Jacobson, Gye Won Han, Raymond C. Stevens, Lak Shin Jeong, Sun Choi, Vadim Cherezov
Citation: Shiriaeva, A., Park, D., Kim, G., Lee, Y., Hou, X., Jarhad, D. B., Kim, G., Yu, J., Hyun, Y. E., Kim, W., Gao, Z.-G., Jacobson, K. A., Han, G. W., Stevens, R. C., Jeong, L. S., Choi, S., & Cherezov, V. (2022). GPCR Agonist-to-Antagonist Conversion: Enabling the Design of Nucleoside Functional Switches for the A2A Adenosine Receptor. Journal of Medicinal Chemistry. https://doi.org/10.1021/acs.jmedchem.2c00462
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Cecilia M. Casadei, Ahmad Hosseinizadeh, Gebhard F. X. Schertler, Abbas Ourmazd, Robin Santra
Citation: Casadei, C. M., Hosseinizadeh, A., Schertler, G. F. X., Ourmazd, A., & Santra, R. (2022). Dynamics retrieval from stochastically weighted incomplete data by low-pass spectral analysis. Structural Dynamics, 9(4), 044101. https://doi.org/10.1063/4.0000156
Type: Journal-article
Authors: Elizaveta Lyapina, Egor Marin, Anastasiia Gusach, Philipp Orekhov, Andrey Gerasimov, Aleksandra Luginina, Daniil Vakhrameev, Margarita Ergasheva, Margarita Kovaleva, Georgii Khusainov, Polina Khorn, Mikhail Shevtsov, Kirill Kovalev, Sergey Bukhdruker, Ivan Okhrimenko, Petr Popov, Hao Hu, Uwe Weierstall, Wei Liu, Yunje Cho, Ivan Gushchin, Andrey Rogachev, Gleb Bourenkov, Sehan Park, Gisu Park, Hyo Jung Hyun, Jaehyun Park, Valentin Gordeliy, Valentin Borshchevskiy, Alexey Mishin, Vadim Cherezov
Citation: Lyapina, E., Marin, E., Gusach, A., Orekhov, P., Gerasimov, A., Luginina, A., Vakhrameev, D., Ergasheva, M., Kovaleva, M., Khusainov, G., Khorn, P., Shevtsov, M., Kovalev, K., Bukhdruker, S., Okhrimenko, I., Popov, P., Hu, H., Weierstall, U., Liu, W., ... Cherezov, V. (2022). Structural basis for receptor selectivity and inverse agonism in S1P5 receptors. Nature Communications, 13(1). https://doi.org/10.1038/s41467-022-32447-1
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Susannah Holmes, Henry J. Kirkwood, Richard Bean, Klaus Giewekemeyer, Andrew V. Martin, Marjan Hadian-Jazi, Max O. Wiedorn, Dominik Oberthür, Hugh Marman, Luigi Adriano, Nasser Al-Qudami, Saša Bajt, Imrich Barák, Sadia Bari, Johan Bielecki, Sandor Brockhauser, Mathew A. Coleman, Francisco Cruz-Mazo, Cyril Danilevski, Katerina Dörner, Alfonso M. Gañán-Calvo, Rita Graceffa, Hans Fanghor, Michael Heymann, Matthias Frank, Alexander Kaukher, Yoonhee Kim, Bostjan Kobe, Juraj Knoška, Torsten Laurus, Romain Letrun, Luis Maia, Marc Messerschmidt, Markus Metz, Thomas Michelat, Grant Mills, Serguei Molodtsov, Diana C. F. Monteiro, Andrew J. Morgan, Astrid Münnich, Gisel E. Peña Murillo, Gianpietro Previtali, Adam Round, Tokushi Sato, Robin Schubert, Joachim Schulz, Megan Shelby, Carolin Seuring, Jonas A. Sellberg, Marcin Sikorski, Alessandro Silenzi, Stephan Stern, Jola Sztuk-Dambietz, Janusz Szuba, Martin Trebbin, Patrick Vagovic, Thomas Ve, Britta Weinhausen, Krzysztof Wrona, Paul Lourdu Xavier, Chen Xu, Oleksandr Yefanov, Keith A. Nugent, Henry N. Chapman, Adrian P. Mancuso, Anton Barty, Brian Abbey, Connie Darmanin
Citation: Holmes, S., Kirkwood, H. J., Bean, R., Giewekemeyer, K., Martin, A. V., Hadian-Jazi, M., Wiedorn, M. O., Oberthür, D., Marman, H., Adriano, L., Al-Qudami, N., Bajt, S., Barák, I., Bari, S., Bielecki, J., Brockhauser, S., Coleman, M. A., Cruz-Mazo, F., Danilevski, C., ... Darmanin, C. (2022). Megahertz pulse trains enable multi-hit serial femtosecond crystallography experiments at X-ray free electron lasers. Nature Communications, 13(1). https://doi.org/10.1038/s41467-022-32434-6
Type: Journal-article
Authors: Nirupa Nagaratnam, Jose M. Martin-Garcia, Jay-How Yang, Matthew R. Goode, Gihan Ketawala, Felicia M. Craciunescu, James D. Zook, Manashi Sonowal, Dewight Williams, Thomas D. Grant, Raimund Fromme, Debra T. Hansen, Petra Fromme
Citation: Nagaratnam, N., Martin-Garcia, J. M., Yang, J.-H., Goode, M. R., Ketawala, G., Craciunescu, F. M., Zook, J. D., Sonowal, M., Williams, D., Grant, T. D., Fromme, R., Hansen, D. T., & Fromme, P. (2022). Structural and biophysical properties of FopA, a major outer membrane protein of Francisella tularensis. PLOS ONE, 17(8), e0267370. https://doi.org/10.1371/journal.pone.0267370
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jeffrey Donatelli, John Spence
Citation: Donatelli, J., & Spence, J. (2022). Structure Determination from Multiple-Scattering Electron Crystallography. Microscopy and Microanalysis, 28(S1), 2766-2767. https://doi.org/10.1017/s1431927622010418
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jayanath C. P. Koliyadu, Romain Letrun, Henry J. Kirkwood, Jia Liu, Man Jiang, Moritz Emons, Richard Bean, Valerio Bellucci, Johan Bielecki, Sarlota Birnsteinova, Raphael de Wijn, Thomas Dietze, Juncheng E, Jan Grünert, Daniel Kane, Chan Kim, Yoonhee Kim, Max Lederer, Bradley Manning, Grant Mills, Luis L. Morillo, Nadja Reimers, Dimitrios Rompotis, Adam Round, Marcin Sikorski, Cedric M. S. Takem, Patrik Vagovič, Sandhya Venkatesan, Jinxiong Wang, Ulrike Wegner, Adrian P. Mancuso, Tokushi Sato
Citation: Koliyadu, J. C. P., Letrun, R., Kirkwood, H. J., Liu, J., Jiang, M., Emons, M., Bean, R., Bellucci, V., Bielecki, J., Birnsteinova, S., de Wijn, R., Dietze, T., E, J., Grunert, J., Kane, D., Kim, C., Kim, Y., Lederer, M., Manning, B., Mills, G., Morillo, L. L., Reimers, N., Rompotis, D., Round, A., Sikorski, M., Takem, C. M. S., Vagovic, P., Venkatesan, S., Wang, J., Wegner, U., Mancuso, A. P. & Sato, T. (2022). J. Synchrotron Rad. 29, 1273-1283.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Yen-Lin Chen, Weiwei He, Serdal Kirmizialtin, Lois Pollack
Citation: Chen, Y.-L., He, W., Kirmizialtin, S., & Pollack, L. (2022). Insights into the structural stability of major groove RNA triplexes by WAXS-guided MD simulations. Cell Reports Physical Science, 3(7), 100971. https://doi.org/10.1016/j.xcrp.2022.100971
Type: Journal-article
Authors: Hasan DeMirci, Esra Ayan
Citation: DeMirci, H., & Ayan, E. (2023). A Brief Atlas of Insulin. Current Diabetes Reviews, 19(6). https://doi.org/10.2174/1573399819666220610150342
Type: Journal-article
Authors: Galen J. Correy, Daniel W. Kneller, Gwyndalyn Phillips, Swati Pant, Silvia Russi, Aina E. Cohen, George Meigs, James M. Holton, Stefan Gahbauer, Michael C. Thompson, Alan Ashworth, Leighton Coates, Andrey Kovalevsky, Flora Meilleur, James S. Fraser
Citation: Correy, G. J., Kneller, D. W., Phillips, G., Pant, S., Russi, S., Cohen, A. E., Meigs, G., Holton, J. M., Gahbauer, S., Thompson, M. C., Ashworth, A., Coates, L., Kovalevsky, A., Meilleur, F., & Fraser, J. S. (2022). The mechanisms of catalysis and ligand binding for the SARS-CoV-2 NSP3 macrodomain from neutron and x-ray diffraction at room temperature. Science Advances, 8(21). https://doi.org/10.1126/sciadv.abo5083
Type: Journal-article
Authors: Fiacre Kabayiza, Sarah B. Woodruff, William J. Bauer
Citation: Kabayiza, F., Woodruff, S. B., & Bauer, W. J. (2022). The Gamification of XFEL Education Using XFEL Crystal Blaster. Crystals, 12(5), 671. https://doi.org/10.3390/cryst12050671
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Dimitrios Giannakis, Abbas Ourmazd, Philipp Pfeffer, Jörg Schumacher, Joanna Slawinska
Citation: Giannakis, D., Ourmazd, A., Pfeffer, P., Schumacher, J., & Slawinska, J. (2022). Embedding classical dynamics in a quantum computer. Physical Review A, 105(5). https://doi.org/10.1103/physreva.105.052404
Type: Journal-article
Authors: Gabriela Diaz‐Figueroa, Marc Messerschimdt, Jong Woo‐Kim, Tien Olson
Citation: Diaz‐Figueroa, G., Messerschimdt, M., Woo‐Kim, J., & Olson, T. (2022). From Alignment Laser to 3D Structures: Determining Structures of GPCRs in a Compact X‐ray Light Source. The FASEB Journal, 36(S1). Portico. https://doi.org/10.1096/fasebj.2022.36.s1.r3457
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Nozomi Ando, Steve P. Meisburger, David A. Case
Citation: Ando, N., Meisburger, S. P., & Case, D. A. (2022). Correlated motions in enzymes. The FASEB Journal, 36(S1). Portico. https://doi.org/10.1096/fasebj.2022.36.s1.0i154
Type: Journal-article
Authors: Hasan DeMirci, Yashas Rao, Gabriele M. Stoffel, Bastian Vögeli, Kristina Schell, Aharon Gomez, Alexander Batyuk, Cornelius Gati, Raymond G. Sierra, Mark S. Hunter, E. Han Dao, Halil I. Ciftci, Brandon Hayes, Fredric Poitevin, Po-Nan Li, Manat Kaur, Kensuke Tono, David Adrian Saez, Samuel Deutsch, Yasuo Yoshikuni, Helmut Grubmüller, Tobias J. Erb, Esteban Vöhringer-Martinez, Soichi Wakatsuki
Citation: DeMirci, H., Rao, Y., Stoffel, G. M., Vögeli, B., Schell, K., Gomez, A., Batyuk, A., Gati, C., Sierra, R. G., Hunter, M. S., Dao, E. H., Ciftci, H. I., Hayes, B., Poitevin, F., Li, P.-N., Kaur, M., Tono, K., Saez, D. A., Deutsch, S., ... Wakatsuki, S. (2022). Intersubunit Coupling Enables Fast CO2-Fixation by Reductive Carboxylases. ACS Central Science. https://doi.org/10.1021/acscentsci.2c00057
Type: Journal-article
Authors: Tek Narsingh Malla, Marius Schmidt
Citation: Malla, T. N., & Schmidt, M. (2022). Transient state measurements on proteins by time-resolved crystallography. Current Opinion in Structural Biology, 74, 102376. https://doi.org/10.1016/j.sbi.2022.102376
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Salah Awel, Sebastian Lavin-Varela, Nils Roth, Daniel A. Horke, Andrei V. Rode, Richard A. Kirian, Jochen Küpper, Henry N. Chapman
Citation: Awel, S., Lavin-Varela, S., Roth, N., Horke, D. A., Rode, A. V., Kirian, R. A., Küpper, J., & Chapman, H. N. (2022). Optical Funnel to Guide and Focus Virus Particles for X-Ray Diffractive Imaging. Physical Review Applied, 17(4). https://doi.org/10.1103/physrevapplied.17.044044
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jorvani Cruz Villarreal, Rory Kruithoff, Ana Egatz-Gomez, Paul D. Coleman, Robert Ros, Todd R. Sandrin, Alexandra Ros
Citation: Cruz Villarreal, J., Kruithoff, R., Egatz-Gomez, A., Coleman, P. D., Ros, R., Sandrin, T. R., & Ros, A. (2022). MIMAS: microfluidic platform in tandem with MALDI mass spectrometry for protein quantification from small cell ensembles. Analytical and Bioanalytical Chemistry, 414(13), 3945-3958. https://doi.org/10.1007/s00216-022-04038-y
Type: Journal-article
Authors: Jose M. Martin-Garcia, Sabine Botha, Hao Hu, Rebecca Jernigan, Albert Castellví, Stella Lisova, Fernando Gil, Barbara Calisto, Isidro Crespo, Shatabdi Roy-Chowdhury, Alice Grieco, Gihan Ketawala, Uwe Weierstall, John Spence, Petra Fromme, Nadia Zatsepin, Dirk Roeland Boer, Xavi Carpena
Citation: Martin-Garcia, J. M., Botha, S., Hu, H., Jernigan, R., Castellví, A., Lisova, S., Gil, F., Calisto, B., Crespo, I., Roy-Chowdhury, S., Grieco, A., Ketawala, G., Weierstall, U., Spence, J., Fromme, P., Zatsepin, N., Boer, D. R., & Carpena, X. (2022). Serial macromolecular crystallography at ALBA Synchrotron Light Source. Journal of Synchrotron Radiation, 29(3), 896-907. https://doi.org/10.1107/s1600577522002508
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: B. R. Mobley, K. E. Schmidt, J. P. J. Chen, R. A. Kirian
Citation: Mobley, B. R., Schmidt, K. E., Chen, J. P. J., & Kirian, R. A. (2022). A Metropolis Monte Carlo algorithm for merging single-particle diffraction intensities. Acta Crystallographica Section A Foundations and Advances, 78(3), 200-211. https://doi.org/10.1107/s2053273322001395
Type: Journal-article
Authors: Daniel J. Wells, Peter Berntsen, Eugeniu Balaur, Cameron M. Kewish, Patrick Adams, Andrew Aquila, Jack Binns, Sébastien Boutet, Hayden Broomhall, Carl Caleman, Andrew Christofferson, Charlotte E. Conn, Caroline Dahlqvist, Leonie Flueckiger, Francisco Gian Roque, Tamar L. Greaves, Majid Hejazian, Mark Hunter, Marjan Hadian Jazi, H. Olof Jönsson, Sachini Kadaoluwa Pathirannahalage, Richard A. Kirian, Alex Kozlov, Ruslan P. Kurta, Hugh Marman, Derek Mendez, Andrew Morgan, Keith Nugent, Dominik Oberthuer, Harry Quiney, Juliane Reinhardt, Saumitra Saha, Jonas A. Sellberg, Raymond Sierra, Max Wiedorn, Brian Abbey, Andrew V. Martin, Connie Darmanin
Citation: Wells, D. J., Berntsen, P., Balaur, E., Kewish, C. M., Adams, P., Aquila, A., Binns, J., Boutet, S., Broomhall, H., Caleman, C., Christofferson, A., Conn, C. E., Dahlqvist, C., Flueckiger, L., Gian Roque, F., Greaves, T. L., Hejazian, M., Hunter, M., Hadian Jazi, M., ... Darmanin, C. (2022). Observations of phase changes in monoolein during high viscous injection. Journal of Synchrotron Radiation, 29(3), 602-614. https://doi.org/10.1107/s1600577522001862
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Stephanie A Wankowicz, Saulo H de Oliveira, Daniel W Hogan, Henry van den Bedem, James S Fraser
Citation: Wankowicz, S. A., de Oliveira, S. H., Hogan, D. W., van den Bedem, H., & Fraser, J. S. (2022). Ligand binding remodels protein side-chain conformational heterogeneity. ELife, 11. CLOCKSS. https://doi.org/10.7554/elife.74114
Type: Journal-article
Authors: Jorvani Cruz Villarreal, Ana Egatz‐Gomez, Jiawei Liu, Robert Ros, George T. Noutsios, Todd R. Sandrin, Paul D. Coleman, Alexandra Ros
Citation: Villarreal, J. C., Egatz‐Gomez, A., Liu, J., Ros, R., Noutsios, G. T., Sandrin, T. R., Coleman, P. D., & Ros, A. (2021). Amyloid‐β analysis from brain cells using microfluidics and mass spectrometry. Alzheimer's & Dementia, 17(S3). Portico. https://doi.org/10.1002/alz.054274
Type: Journal-article
Authors: Ghoncheh Mashayekhi, John Vant, Abhigna Polavarapu, Abbas Ourmazd, Abhishek Singharoy
Citation: Mashayekhi, G., Vant, J., Polavarapu, A., Ourmazd, A., & Singharoy, A. (2022). Energy landscape of the SARS-CoV-2 reveals extensive conformational heterogeneity. Current Research in Structural Biology, 4, 68-77. https://doi.org/10.1016/j.crstbi.2022.02.001
Type: Journal-article
Authors: Cody Krivacic, Kale Kundert, Xingjie Pan, Roland A. Pache, Lin Liu, Shane O Conchúir, Jeliazko R. Jeliazkov, Jeffrey J. Gray, Michael C. Thompson, James S. Fraser, Tanja Kortemme
Citation: Krivacic, C., Kundert, K., Pan, X., Pache, R. A., Liu, L., O Conchúir, S., Jeliazkov, J. R., Gray, J. J., Thompson, M. C., Fraser, J. S., & Kortemme, T. (2022). Accurate positioning of functional residues with robotics-inspired computational protein design. Proceedings of the National Academy of Sciences, 119(11). https://doi.org/10.1073/pnas.2115480119
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Authors: Belgin Sever, Halilibrahim Ciftci, Hasan DeMirci, Hilal Sever, Firdevs Ocak, Burak Yulug, Hiroshi Tateishi, Takahisa Tateishi, Masami Otsuka, Mikako Fujita, Ayşe Nazlı Başak
Citation: Sever, B., Ciftci, H., DeMirci, H., Sever, H., Ocak, F., Yulug, B., Tateishi, H., Tateishi, T., Otsuka, M., Fujita, M., & Başak, A. N. (2022). Comprehensive Research on Past and Future Therapeutic Strategies Devoted to Treatment of Amyotrophic Lateral Sclerosis. International Journal of Molecular Sciences, 23(5), 2400. https://doi.org/10.3390/ijms23052400
Type: Journal-article
Authors: Kaitlyn Tsai, Vanja Stojković, D. John Lee, Iris D. Young, Teresa Szal, Dorota Klepacki, Nora Vázquez-Laslop, Alexander S. Mankin, James S. Fraser, Danica Galonić Fujimori
Citation: Tsai, K., Stojković, V., Lee, D. J., Young, I. D., Szal, T., Klepacki, D., Vázquez-Laslop, N., Mankin, A. S., Fraser, J. S., & Fujimori, D. G. (2022). Structural basis for context-specific inhibition of translation by oxazolidinone antibiotics. Nature Structural & Molecular Biology, 29(2), 162-171. https://doi.org/10.1038/s41594-022-00723-9
Type: Journal-article
Authors: Iris D. Young, James S. Fraser
Citation: Young, I. D., & Fraser, J. S. (2022). Curiosity: a tool for exploring density features in crystallographic and cryoEM maps. Biophysical Journal, 121(3), 528a. https://doi.org/10.1016/j.bpj.2021.11.2781
Type: Journal-article
Authors: David Nedrud, Yungui He, Daniel Schmidt, James Fraser, Willow Coyote-Maestas
Citation: Nedrud, D., He, Y., Schmidt, D., Fraser, J., & Coyote-Maestas, W. (2022). Deconvoluting receptor trafficking, regulation, and function using massively parallel assays. Biophysical Journal, 121(3), 2a. https://doi.org/10.1016/j.bpj.2021.11.2700
Type: Journal-article
Authors: Matthew Hancock, Thomas-Otavio Peulen, Benjamin Webb, James S. Fraser, Paul D. Adams, Andrej Sali
Citation: Hancock, M., Peulen, T.-O., Webb, B., Fraser, J. S., Adams, P. D., & Sali, A. (2022). Integration of software tools for integrative modeling of biomolecular systems. Biophysical Journal, 121(3), 31a. https://doi.org/10.1016/j.bpj.2021.11.2555
Type: Journal-article
Authors: Alexis M. Kelley, Christian B. Macdonald, James Fraser
Citation: Kelley, A. M., Macdonald, C. B., & Fraser, J. (2022). Dismantling antibiotic resistance one variant at a time: in vitro and computational analysis of VatD. Biophysical Journal, 121(3), 48a. https://doi.org/10.1016/j.bpj.2021.11.2487
Type: Journal-article
Authors: C. Swathi K. Menon, Konstantinos Karpos, Thomas D. Grant, Andrey V. Struts, Steven D.E. Fried, Roberto C. Alvarez, Suchithranga M.D.C. Perera, Irina V. Kosheleva, Alan Grossfield, Petra Fromme, Richard A. Kirian, Michael F. Brown
Citation: Menon, C. S. K., Karpos, K., Grant, T. D., Struts, A. V., Fried, S. D. E., Alvarez, R. C., Perera, S. M. D. C., Kosheleva, I. V., Grossfield, A., Fromme, P., Kirian, R. A., & Brown, M. F. (2022). Time-resolved functional expansion of visual rhodopsin detected by x-ray scattering. Biophysical Journal, 121(3), 285a-286a. https://doi.org/10.1016/j.bpj.2021.11.1313
Type: Journal-article
Authors: Eric R. Greene, Erin Thompson, D. John Lee, Angelika Arada, Daphne Chen, James Fraser
Citation: Greene, E. R., Thompson, E., Lee, D. J., Arada, A., Chen, D., & Fraser, J. (2022). Connecting glutamine synthetase biophysics to the cellular environment. Biophysical Journal, 121(3), 348a. https://doi.org/10.1016/j.bpj.2021.11.1035
Type: Journal-article
Authors: Christian B. Macdonald, Alexis Kelley, Jenna Pellegrino, Willow Coyote-Maestas, James Fraser
Citation: Macdonald, C. B., Kelley, A., Pellegrino, J., Coyote-Maestas, W., & Fraser, J. (2022). Using deep mutational scanning to identify the determinants of antibiotic resistance. Biophysical Journal, 121(3), 422a. https://doi.org/10.1016/j.bpj.2021.11.665
Type: Journal-article
Authors: Matthew Hancock, Thomas-Otavio Peulen, Benjamin Webb, Billy Poon, James S Fraser, Paul Adams, Andrej Sali
Citation: Hancock, M., Peulen, T.-O., Webb, B., Poon, B., Fraser, J. S., Adams, P., & Sali, A. (2022). Integration of software tools for integrative modeling of biomolecular systems. Journal of Structural Biology, 214(1), 107841. https://doi.org/10.1016/j.jsb.2022.107841
Type: Journal-article
Authors: Surya V. S. R. K. Pulavarti, Jack B. Maguire, Shirley Yuen, Joseph S. Harrison, Jermel Griffin, Lakshmanane Premkumar, Edward A. Esposito, George I. Makhatadze, Angel E. Garcia, Thomas M. Weiss, Edward H. Snell, Brian Kuhlman, Thomas Szyperski
Citation: Pulavarti, S. V. S. R. K., Maguire, J. B., Yuen, S., Harrison, J. S., Griffin, J., Premkumar, L., Esposito, E. A., Makhatadze, G. I., Garcia, A. E., Weiss, T. M., Snell, E. H., Kuhlman, B., & Szyperski, T. (2022). From Protein Design to the Energy Landscape of a Cold Unfolding Protein. The Journal of Physical Chemistry B, 126(6), 1212-1231. https://doi.org/10.1021/acs.jpcb.1c10750
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Israel Rodríguez, Lauren Fernández-Vega, Andrea N. Maser-Figueroa, Branlee Sang, Patricia González-Pagán, Arthur D. Tinoco
Citation: Rodríguez, I., Fernández-Vega, L., Maser-Figueroa, A. N., Sang, B., González-Pagán, P., & Tinoco, A. D. (2022). Exploring Titanium(IV) Complexes as Potential Antimicrobial Compounds. Antibiotics, 11(2), 158. https://doi.org/10.3390/antibiotics11020158
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Dameli Assalauova, Young Yong Kim, Sergey Bobkov, Ruslan Khubbutdinov, Max Rose, Roberto Alvarez, Jakob Andreasson, Eugeniu Balaur, Alice Contreras, Hasan DeMirci, Luca Gelisio, Janos Hajdu, Mark S. Hunter, Ruslan P. Kurta, Haoyuan Li, Matthew McFadden, Reza Nazari, Peter Schwander, Anton Teslyuk, Peter Walter, P. Lourdu Xavier, Chun Hong Yoon, Sahba Zaare, Viacheslav A. Ilyin, Richard A. Kirian, Brenda G. Hogue, Andrew Aquila, Ivan A. Vartanyants
Citation: Assalauova, D., Kim, Y. Y., Bobkov, S., Khubbutdinov, R., Rose, M., Alvarez, R., Andreasson, J., Balaur, E., Contreras, A., DeMirci, H., Gelisio, L., Hajdu, J., Hunter, M. S., Kurta, R. P., Li, H., McFadden, M., Nazari, R., Schwander, P., Teslyuk, A., ... Vartanyants, I. A. (2022). An advanced workflow for single-particle imaging with the limited data at an X-ray free-electron laser. Corrigendum. IUCrJ, 9(2), 328-328. https://doi.org/10.1107/s2052252522000501
Type: Journal-article
Authors: Fatma Betul Ertem, Omur Guven, Cengizhan Buyukdag, Oktay Gocenler, Esra Ayan, Busra Yuksel, Mehmet Gul, Gozde Usta, Barıs Cakılkaya, J. Austin Johnson, E. Han Dao, Zhen Su, Frederic Poitevin, Chun Hong Yoon, Christopher Kupitz, Brandon Hayes, Mengning Liang, Mark S. Hunter, Alexander Batyuk, Raymond G. Sierra, Gihan Ketawala, Sabine Botha, Çağdaş Dağ, Hasan DeMirci
Citation: Ertem, F. B., Guven, O., Buyukdag, C., Gocenler, O., Ayan, E., Yuksel, B., Gul, M., Usta, G., Cakılkaya, B., Johnson, J. A., Dao, E. H., Su, Z., Poitevin, F., Yoon, C. H., Kupitz, C., Hayes, B., Liang, M., Hunter, M. S., Batyuk, A., ... DeMirci, H. (2022). Protocol for structure determination of SARS-CoV-2 main protease at near-physiological-temperature by serial femtosecond crystallography. STAR Protocols, 3(1), 101158. https://doi.org/10.1016/j.xpro.2022.101158
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Halilibrahim Ciftci, Belgin Sever, Firdevs Ocak, Nilüfer Bayrak, Mahmut Yıldız, Hatice Yıldırım, Hasan DeMirci, Hiroshi Tateishi, Masami Otsuka, Mikako Fujita, Amaç Fatih TuYuN
Citation: Ciftci, H., Sever, B., Ocak, F., Bayrak, N., Yıldız, M., Yıldırım, H., DeMirci, H., Tateishi, H., Otsuka, M., Fujita, M., & TuYuN, A. F. (2022). In Vitro and In Silico Study of Analogs of Plant Product Plastoquinone to Be Effective in Colorectal Cancer Treatment. Molecules, 27(3), 693. https://doi.org/10.3390/molecules27030693
Type: Journal-article
Authors: Roberto Ricardo-Gonzalez, Maya E. Kotas, Claire E. O'Leary, Iliana Tenvooren, Diana M. Marquez, Katelyn Singh, William Damsky, Andrew W. Schroeder, Jarish N. Cohen, Marlys Fassett, Jinwoo Lee, Scott G. Daniel, Kyle Bittinger, Roberto Efraín Díaz, James S. Fraser, Mark Ansel, Matthew Spitzer, Hong-Erh Liang, Richard M. Locksley
Citation: Ricardo-Gonzalez, R., Kotas, M. E., O'Leary, C. E., Tenvooren, I., Marquez, D. M., Singh, K., Damsky, W., Schroeder, A. W., Cohen, J. N., Fassett, M., Lee, J., Daniel, S. G., Bittinger, K., Díaz, R. E., Fraser, J. S., Ansel, M., Spitzer, M., Liang, H.-E., & Locksley, R. M. (2022). Innate Type 2 Immunity Controls Hair Follicle Commensalism by <i>Demodex</i> Mites. SSRN Electronic Journal. https://doi.org/10.2139/ssrn.4013912
Type: Journal-article
Authors: Esra Ayan, Busra Yuksel, Ebru Destan, Fatma Betul Ertem, Gunseli Yildirim, Meryem Eren, Oleksandr M. Yefanov, Anton Barty, Alexandra Tolstikova, Gihan K. Ketawala, Sabine Botha, E. Han Dao, Brandon Hayes, Mengning Liang, Matthew H. Seaberg, Mark S. Hunter, Alexander Batyuk, Valerio Mariani, Zhen Su, Frederic Poitevin, Chun Hong Yoon, Christopher Kupitz, Aina Cohen, Tzanko Doukov, Raymond G. Sierra, Çağdaş Dağ, Hasan DeMirci
Citation: Ayan, E., Yuksel, B., Destan, E., Ertem, F. B., Yildirim, G., Eren, M., Yefanov, O. M., Barty, A., Tolstikova, A., Ketawala, G. K., Botha, S., Dao, E. H., Hayes, B., Liang, M., Seaberg, M. H., Hunter, M. S., Batyuk, A., Mariani, V., Su, Z., ... DeMirci, H. (2022). Cooperative allostery and structural dynamics of streptavidin at cryogenic- and ambient-temperature. Communications Biology, 5(1). https://doi.org/10.1038/s42003-021-02903-7
Type: Journal-article
Authors: Abbas Ourmazd, Keith Moffat, Eaton Edward Lattman
Citation: Ourmazd, A., Moffat, K., & Lattman, E. E. (2022). Structural biology is solved -- now what? Nature Methods, 19(1), 24-26. https://doi.org/10.1038/s41592-021-01357-3
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Kaitlyn Tsai, Vanja Stojković, Lianet Noda-Garcia, Iris D Young, Alexander G Myasnikov, Jordan Kleinman, Ali Palla, Stephen N Floor, Adam Frost, James S Fraser, Dan S Tawfik, Danica Galonić Fujimori
Citation: Tsai, K., Stojković, V., Noda-Garcia, L., Young, I. D., Myasnikov, A. G., Kleinman, J., Palla, A., Floor, S. N., Frost, A., Fraser, J. S., Tawfik, D. S., & Fujimori, D. G. (2022). Directed evolution of the rRNA methylating enzyme Cfr reveals molecular basis of antibiotic resistance. ELife, 11. CLOCKSS. https://doi.org/10.7554/elife.70017
Type: Journal-article
Authors: Yen-Lin Chen, Weiwei He, Serdal Kirmizialtin, Lois Pollack
Citation: Chen, Y.-L., He, W., Kirmizialtin, S., & Pollack, L. (2022). RNA Triplex Structures Revealed by WAXS-Driven MD Simulations. SSRN Electronic Journal. https://doi.org/10.2139/ssrn.4000889
Type: Journal-article
Authors: Jonathon G. Gray, George M. Giambaşu, David A. Case, Tyler Luchko
Citation: Gray, J. G., Giambaşu, G. M., Case, D. A., & Luchko, T. (2022). Integral equation models for solvent in macromolecular crystals. The Journal of Chemical Physics, 156(1), 014801. https://doi.org/10.1063/5.0070869
Type: Journal-article
Authors: Ricardo Ortiz, Domin Koh, Dai Hyun Kim, Mohammad Towshif Rabbani, Cesar Anguaya Velasquez, Mukul Sonker, Edgar A. Arriaga, Alexandra Ros
Citation: Ortiz, R., Koh, D., Kim, D. H., Rabbani, M. T., Anguaya Velasquez, C., Sonker, M., Arriaga, E. A., & Ros, A. (2022). Continuous organelle separation in an insulator‐based dielectrophoretic device. ELECTROPHORESIS, 43(12), 1283-1296. Portico. https://doi.org/10.1002/elps.202100326
Type: Journal-article
Authors: Vijay Jayaraman, D. John Lee, Nadav Elad, Shay Vimer, Michal Sharon, James S. Fraser, Dan S. Tawfik
Citation: Jayaraman, V., Lee, D. J., Elad, N., Vimer, S., Sharon, M., Fraser, J. S., & Tawfik, D. S. (2021). A counter-enzyme complex regulates glutamate metabolism in Bacillus subtilis. Nature Chemical Biology, 18(2), 161-170. https://doi.org/10.1038/s41589-021-00919-y
Type: Journal-article
Authors: Omur Guven, Mehmet Gul, Esra Ayan, J Austin Johnson, Baris Cakilkaya, Gozde Usta, Fatma Betul Ertem, Nurettin Tokay, Busra Yuksel, Oktay Gocenler, Cengizhan Buyukdag, Sabine Botha, Gihan Ketawala, Zhen Su, Brandon Hayes, Frederic Poitevin, Alexander Batyuk, Chun Hong Yoon, Christopher Kupitz, Serdar Durdagi, Raymond G. Sierra, Hasan DeMirci
Citation: Guven, O., Gul, M., Ayan, E., Johnson, J. A., Cakilkaya, B., Usta, G., Ertem, F. B., Tokay, N., Yuksel, B., Gocenler, O., Buyukdag, C., Botha, S., Ketawala, G., Su, Z., Hayes, B., Poitevin, F., Batyuk, A., Yoon, C. H., Kupitz, C., ... DeMirci, H. (2021). Case Study of High-Throughput Drug Screening and Remote Data Collection for SARS-CoV-2 Main Protease by Using Serial Femtosecond X-ray Crystallography. Crystals, 11(12), 1579. https://doi.org/10.3390/cryst11121579
Type: Journal-article
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Citation: Doppler, D. et al., 2022. Co-flow injection for serial crystallography at X-ray free-electron lasers. Journal of Applied Crystallography, 55(1).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Abigael J. Kosgei, Mitchell D. Miller, Minakshi Bhardwaj, Weijun Xu, Jon S. Thorson, Steven G. Van Lanen, George N. Phillips
Citation: Kosgei, A.J. et al., 2022. The crystal structure of DynF from the dynemicin-biosynthesis pathway of Micromonospora chersina. Acta Crystallographica Section F Structural Biology Communications, 78(1), pp.1-7.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Liqiang Zhang, Jordan R Yaron, Lauren Schutz, Emily Aliskevich, Kyle Browder, Nicholas Saldevar, Isabela R Zanetti, Nora Elmadbouly, Honor Glenn, Yize Li, Karen Kibler, Brenda Hogue, Grant McFadden, Alexandra R Lucas
Citation: Zhang, L., Yaron, J. R., Schutz, L., Aliskevich, E., Browder, K., Saldevar, N., Zanetti, I. R., Elmadbouly, N., Glenn, H., Li, Y., Kibler, K., Hogue, B., McFadden, G., & Lucas, A. R. (2021). Abstract 13747: Targeting Urokinase-Type Plasminogen Activator (uPA) and the uPA Receptor, Reduces Vascular Inflammation and Lung Hemorrhage in Systemic Lupus and SARS CoV2 Infection in Mouse Models of Respiratory Distress Syndromes. Circulation, 144(Suppl_2). https://doi.org/10.1161/circ.144.suppl_2.13747
Type: Journal-article
Authors: K. Murray, C. Chambers, D. Chen, Z. Feng, J. Fraser, Y. Ito, Y. Lan, S. Mendez, M. Medina Peregrina, H. Rasiwala, L. Richez, N. Roy, R. Simpson, J. Dilling, W. Fairbank, A.A. Kwiatkowski, T. Brunner
Citation: Murray, K., Chambers, C., Chen, D., Feng, Z., Fraser, J., Ito, Y., Lan, Y., Mendez, S., Medina Peregrina, M., Rasiwala, H., Richez, L., Roy, N., Simpson, R., Dilling, J., Fairbank, W., Kwiatkowski, A. A., & Brunner, T. (2022). Characterization of a Spatially resolved multi-element laser ablation ion source. International Journal of Mass Spectrometry, 472, 116763. https://doi.org/10.1016/j.ijms.2021.116763
Type: Journal-article
Authors: Ebru Destan, Busra Yuksel, Bradley B. Tolar, Esra Ayan, Sam Deutsch, Yasuo Yoshikuni, Soichi Wakatsuki, Christopher A. Francis, Hasan DeMirci
Citation: Destan, E., Yuksel, B., Tolar, B. B., Ayan, E., Deutsch, S., Yoshikuni, Y., Wakatsuki, S., Francis, C. A., & DeMirci, H. (2021). Structural insights into bifunctional thaumarchaeal crotonyl-CoA hydratase and 3-hydroxypropionyl-CoA dehydratase from Nitrosopumilus maritimus. Scientific Reports, 11(1). https://doi.org/10.1038/s41598-021-02180-8
Type: Journal-article
Authors: A. Hosseinizadeh, N. Breckwoldt, R. Fung, R. Sepehr, M. Schmidt, P. Schwander, R. Santra, A. Ourmazd
Citation: Hosseinizadeh, A. et al., 2021. Few-fs resolution of a photoactive protein traversing a conical intersection. Nature, 599(7886), pp.697-701.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Marius Schmidt
Citation: Schmidt, M., 2021. Macromolecular movies, storybooks written by nature. Biophysical Reviews.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Tanner J. Finney, Sanjai J. Parikh, Amir Berman, Darryl Y. Sasaki, Tonya L. Kuhl
Citation: Finney, T. J., Parikh, S. J., Berman, A., Sasaki, D. Y., & Kuhl, T. L. (2021). Characterizing and Tuning the Properties of Polydiacetylene Films for Sensing Applications. Langmuir, 37(44), 12940-12951. https://doi.org/10.1021/acs.langmuir.1c02004
Type: Journal-article
Authors: Serdar Durdagi, Timucin Avsar, Muge Didem Orhan, Muge Serhatli, Bertan Koray Balcioglu, Hasan Umit Ozturk, Alisan Kayabolen, Yuksel Cetin, Seyma Aydinlik, Tugba Bagci-Onder, Saban Tekin, Hasan Demirci, Mustafa Guzel, Atilla Akdemir, Seyma Calis, Lalehan Oktay, Ilayda Tolu, Yasar Enes Butun, Ece Erdemoglu, Alpsu Olkan, Nurettin Tokay, Şeyma Işık, Aysenur Ozcan, Elif Acar, Sehriban Buyukkilic, Yesim Yumak
Citation: Durdagi, S., Avsar, T., Orhan, M. D., Serhatli, M., Balcioglu, B. K., Ozturk, H. U., Kayabolen, A., Cetin, Y., Aydinlik, S., Bagci-Onder, T., Tekin, S., Demirci, H., Guzel, M., Akdemir, A., Calis, S., Oktay, L., Tolu, I., Butun, Y. E., Erdemoglu, E., ... Yumak, Y. (2022). The neutralization effect of montelukast on SARS-CoV-2 is shown by multiscale in silico simulations and combined in vitro studies. Molecular Therapy, 30(2), 963-974. https://doi.org/10.1016/j.ymthe.2021.10.014
Type: Journal-article
Authors: Yen-Lin Chen, Lois Pollack
Citation: Chen, Y.-L., & Pollack, L. (2021). Decoding hidden structural information in solution wide-angle X-ray scattering (WAXS): from ensemble modeling to machine learning. Acta Crystallographica Section A Foundations and Advances, 77(a1), a126-a126. https://doi.org/10.1107/s0108767321098731
Type: Journal-article
Authors: Weiwei He, Yen-Lin Chen, Serdal Kirmizialtin, Lois Pollack
Citation: He, W., Chen, Y.-L., Kirmizialtin, S., & Pollack, L. (2021). Visualization of biomolecular structures by WAXS and MD. Acta Crystallographica Section A Foundations and Advances, 77(a1), a124-a124. https://doi.org/10.1107/s0108767321098755
Type: Journal-article
Authors: Kara Zielinski, Lois Pollack
Citation: Zielinski, K., & Pollack, L. (2021). What it takes for a successful mix-and-inject serial crystallography experiment: from a sample preparation and sample delivery perspective. Acta Crystallographica Section A Foundations and Advances, 77(a1), a78-a78. https://doi.org/10.1107/s0108767321099219
Type: Journal-article
Authors: Michael Thompson, Alexander Wolff, Benjamin Barad, Wilson Nieves Vasquez, Nathaniel Brown, Hyun Sun Cho, Friedrich Schotte, Valentyn Stadnytskyi, Philip Anfinrud, James Fraser
Citation: Thompson, M., Wolff, A., Barad, B., Vasquez, W. N., Brown, N., Cho, H. S., Schotte, F., Stadnytskyi, V., Anfinrud, P., & Fraser, J. (2021). Turning up the heat on molecular machines with multi-temperature and temperature-jump X-ray scattering experiments. Acta Crystallographica Section A Foundations and Advances, 77(a1), a215-a215. https://doi.org/10.1107/s0108767321097841
Type: Journal-article
Authors: Sarah Bowman, Miranda Lynch, Angela Lauricella, Edward Snell
Citation: Bowman, S., Lynch, M., Lauricella, A., & Snell, E. (2021). Pushing the boundaries in crystallization screening: making automated user-accessible crystallization work. Acta Crystallographica Section A Foundations and Advances, 77(a1), a152-a152. https://doi.org/10.1107/s0108767321098470
Type: Journal-article
Authors: Edward Snell, Diana Monteiro, Sarah Bowman
Citation: Snell, E., Monteiro, D., & Bowman, S. (2021). The ideal crystal for structural biology. Acta Crystallographica Section A Foundations and Advances, 77(a1), a109-a109. https://doi.org/10.1107/s0108767321098901
Type: Journal-article
Authors: Mrinal Shekhar, Genki Terashi, Chitrak Gupta, Daipayan Sarkar, Gaspard Debussche, Nicholas J. Sisco, Jonathan Nguyen, Arup Mondal, John Vant, Petra Fromme, Wade D. Van Horn, Emad Tajkhorshid, Daisuke Kihara, Ken Dill, Alberto Perez, Abhishek Singharoy
Citation: Shekhar, M., Terashi, G., Gupta, C., Sarkar, D., Debussche, G., Sisco, N. J., Nguyen, J., Mondal, A., Vant, J., Fromme, P., Van Horn, W. D., Tajkhorshid, E., Kihara, D., Dill, K., Perez, A., & Singharoy, A. (2021). CryoFold: Determining protein structures and data-guided ensembles from cryo-EM density maps. Matter, 4(10), 3195-3216. https://doi.org/10.1016/j.matt.2021.09.004
Type: Journal-article
Authors: Suraj Pandey, George Calvey, Andrea M. Katz, Tek Narsingh Malla, Faisal H. M. Koua, Jose M. Martin-Garcia, Ishwor Poudyal, Jay-How Yang, Mohammad Vakili, Oleksandr Yefanov, Kara A. Zielinski, Sasa Bajt, Salah Awel, Katarina Doerner, Matthias Frank, Luca Gelisio, Rebecca Jernigan, Henry Kirkwood, Marco Kloos, Jayanath Koliyadu, Valerio Mariani, Mitchell D. Miller, Grant Mills, Garrett Nelson, Jose L. Olmos, Alireza Sadri, Tokushi Sato, Alexandra Tolstikova, Weijun Xu, Abbas Ourmazd, John C. H. Spence, Peter Schwander, Anton Barty, Henry N. Chapman, Petra Fromme, Adrian P. Mancuso, George N. Phillips, Richard Bean, Lois Pollack, Marius Schmidt
Citation: Pandey, S. et al., 2021. Observation of substrate diffusion and ligand binding in enzyme crystals using high-repetition-rate mix-and-inject serial crystallography. IUCrJ, 8(6).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Terra Sztain, Surl-Hee Ahn, Anthony T. Bogetti, Lorenzo Casalino, Jory A. Goldsmith, Evan Seitz, Ryan S. McCool, Fiona L. Kearns, Francisco Acosta-Reyes, Suvrajit Maji, Ghoncheh Mashayekhi, J. Andrew McCammon, Abbas Ourmazd, Joachim Frank, Jason S. McLellan, Lillian T. Chong, Rommie E. Amaro
Citation: Sztain, T. et al., 2021. A glycan gate controls opening of the SARS-CoV-2 spike protein. Nature Chemistry.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Serdar Durdagi, Çağdaş Dağ, Berna Dogan, Merve Yigin, Timucin Avsar, Cengizhan Buyukdag, Ismail Erol, Fatma Betul Ertem, Seyma Calis, Gunseli Yildirim, Muge D. Orhan, Omur Guven, Busecan Aksoydan, Ebru Destan, Kader Sahin, Sabri O. Besler, Lalehan Oktay, Alaleh Shafiei, Ilayda Tolu, Esra Ayan, Busra Yuksel, Ayse B. Peksen, Oktay Gocenler, Ali D. Yucel, Ozgur Can, Serena Ozabrahamyan, Alpsu Olkan, Ece Erdemoglu, Fulya Aksit, Gokhan Tanisali, Oleksandr M. Yefanov, Anton Barty, Alexandra Tolstikova, Gihan K. Ketawala, Sabine Botha, E. Han Dao, Brandon Hayes, Mengning Liang, Matthew H. Seaberg, Mark S. Hunter, Alex Batyuk, Valerio Mariani, Zhen Su, Frederic Poitevin, Chun Hong Yoon, Christopher Kupitz, Raymond G. Sierra, Edward H. Snell, Hasan DeMirci
Citation: Durdagi, S. et al., 2021. Near-physiological-temperature serial crystallography reveals conformations of SARS-CoV-2 main protease active site for improved drug repurposing. Structure.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: M. Sonker, B.G. Abdallah, A. Ros
Citation: Sonker, M., Abdallah, B.G. & Ros, A., 2021. Surface coatings for microfluidic biomedical devices. Microfluidic Devices for Biomedical Applications, pp.79-123.
Type: Book-chapter
Authors: Jonathan K. Williams, Baifan Wang, Andrew Sam, Cody L. Hoop, David A. Case, Jean Baum
Type: Journal-article
Authors: Timothy R. Stachowski, Mary E. Snell, Edward H. Snell
Citation: Stachowski, T.R., Snell, M.E. & Snell, E.H., 2021. A SAXS-based approach to rationally evaluate radical scavengers - toward eliminating radiation damage in solution and crystallographic studies. Journal of Synchrotron Radiation, 28(5).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Halilibrahim Ciftci, Hiroshi Tateishi, Kotaro Koiwai, Ryoko Koga, Kensaku Anraku, Kazuaki Monde, Çağdaş Dağ, Ebru Destan, Busra Yuksel, Esra Ayan, Gunseli Yildirim, Merve Yigin, F. Betul Ertem, Alaleh Shafiei, Omur Guven, Sabri O. Besler, Raymond G. Sierra, Chun Hong Yoon, Zhen Su, Mengling Liang, Burcin Acar, Turkan Haliloglu, Masami Otsuka, Fumiaki Yumoto, Mikako Fujita, Toshiya Senda, Hasan DeMirci
Citation: Ciftci, H. et al., 2021. Structural insight into host plasma membrane association and assembly of HIV-1 matrix protein. Scientific Reports, 11(1).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Andrea Cellini, Weixiao Yuan Wahlgren, Léocadie Henry, Suraj Pandey, Swagatha Ghosh, Leticia Castillon, Elin Claesson, Heikki Takala, Joachim Kübel, Amke Nimmrich, Valentyna Kuznetsova, Eriko Nango, So Iwata, Shigeki Owada, Emina A. Stojković, Marius Schmidt, Janne A. Ihalainen, Sebastian Westenhoff
Citation: Cellini, A. et al., 2021. The three-dimensional structure of Drosophila melanogaster (6-4) photolyase at room temperature. Acta Crystallographica Section D Structural Biology, 77(8), pp.1001-1009.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Gokhan Tanisali, Ahmet Sozak, Abdul Samet Bulut, Tolga Ziya Sander, Ozlem Dogan, Cagdas Dag, Mehmet Gönen, Fusun Can, Hasan Demirci, Onder Ergonul
Citation: Tanisali, G. et al., 2021. Effectiveness of different types of Masks in Aerosol Dispersion in SARS-CoV-2 Infection. International Journal of Infectious Diseases.
Type: Journal-article
Authors: Shuo Sui, Anne Mulichak, Raviraj Kulathila, Joshua McGee, Danny Filiatreault, Sarthak Saha, Aina Cohen, Jinhu Song, Holly Hung, Jonathan Selway, Christina Kirby, Om K. Shrestha, Wilhelm Weihofen, Michelle Fodor, Mei Xu, Rajiv Chopra, Sarah L. Perry
Citation: Sui, S. et al., 2021. A capillary-based microfluidic device enables primary high-throughput room-temperature crystallographic screening. Journal of Applied Crystallography, 54(4).
Type: Journal-article
Authors: Mikael H Elias, James S Fraser, Shina Caroline Lynn Kamerlin, Wayne M Patrick, Colin J Jackson
Citation: Elias, M.H. et al., 2021. Dan Salah Tawfik (1955‐2021)--A giant of protein evolution. EMBO reports.
Type: Journal-article
Authors: Paul Bogdan, Gustavo Caetano-Anollés, Anna Jolles, Hyunju Kim, James Morris, Cheryl A Murphy, Catherine Royer, Edward H Snell, Adam Steinbrenner, Nicholas Strausfeld
Citation: Bogdan, P., Caetano-Anollés, G., Jolles, A., Kim, H., Morris, J., Murphy, C. A., Royer, C., Snell, E. H., Steinbrenner, A., & Strausfeld, N. (2021). Biological Networks across Scales--The Theoretical and Empirical Foundations for Time-Varying Complex Networks that Connect Structure and Function across Levels of Biological Organization. Integrative and Comparative Biology, 61(6), 1991-2010. https://doi.org/10.1093/icb/icab069
Type: Journal-article
Authors: Kara Zielinski, Lois Pollack
Citation: Zielinski, K. & Pollack, L., 2020. Applications of microfluidic mixers for time-resolved SAXS and crystallography experiments. Acta Crystallographica Section A Foundations and Advances, 76(a1), pp.a33-a33.
Type: Journal-article
Authors: Tek Narsingh Malla, Suraj Pandey, Luis Aldama, Dennisse Feliz, Moraima Noda, Ishwor Poudyal, George N. Phillips, Emina A. Stojković, Marius Schmidt
Citation: Malla, T.N. et al., 2021. Vitamin C Binds to SARS Coronavirus-2 Main Protease Essential for Viral Replication.
Type: Posted-content
Authors: Weiwei He, Yen-Lin Chen, Lois Pollack, Serdal Kirmizialtin
Citation: He, W. et al., 2021. The structural plasticity of nucleic acid duplexes revealed by WAXS and MD. Science Advances, 7(17), p.eabf6106.
Type: Journal-article
Authors: Miranda L. Lynch, Edward H. Snell, Sarah E. J. Bowman
Citation: Lynch, M.L., Snell, E.H. & Bowman, S.E.J., 2021. Structural biology in the time of COVID-19: perspectives on methods and milestones. IUCrJ, 8(3), pp.335-341.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Edmond M. Linossi, Gabriella O. Estevam, Masaya Oshima, James S. Fraser, Eric A. Collisson, Natalia Jura
Citation: Linossi, E. M., Estevam, G. O., Oshima, M., Fraser, J. S., Collisson, E. A., & Jura, N. (2021). State of the structure address on MET receptor activation by HGF. Biochemical Society Transactions, 49(2), 645-661. https://doi.org/10.1042/bst20200394
Type: Journal-article
Authors: Willow Coyote-Maestas, James S Fraser
Citation: Coyote-Maestas, W., & Fraser, J. S. (2021). ORACLE reveals a bright future to fight bacteria. ELife, 10. CLOCKSS. https://doi.org/10.7554/elife.68277
Type: Journal-article
Authors: Marion Schuller, Galen J. Correy, Stefan Gahbauer, Daren Fearon, Taiasean Wu, Roberto Efraín Díaz, Iris D. Young, Luan Carvalho Martins, Dominique H. Smith, Ursula Schulze-Gahmen, Tristan W. Owens, Ishan Deshpande, Gregory E. Merz, Aye C. Thwin, Justin T. Biel, Jessica K. Peters, Michelle Moritz, Nadia Herrera, Huong T. Kratochvil, Anthony Aimon, James M. Bennett, Jose Brandao Neto, Aina E. Cohen, Alexandre Dias, Alice Douangamath, Louise Dunnett, Oleg Fedorov, Matteo P. Ferla, Martin R. Fuchs, Tyler J. Gorrie-Stone, James M. Holton, Michael G. Johnson, Tobias Krojer, George Meigs, Ailsa J. Powell, Johannes Gregor Matthias Rack, Victor L. Rangel, Silvia Russi, Rachael E. Skyner, Clyde A. Smith, Alexei S. Soares, Jennifer L. Wierman, Kang Zhu, Peter O’Brien, Natalia Jura, Alan Ashworth, John J. Irwin, Michael C. Thompson, Jason E. Gestwicki, Frank von Delft, Brian K. Shoichet, James S. Fraser, Ivan Ahel,
Citation: Schuller, M. et al., 2021. Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking. Science Advances, 7(16), p.eabf8711.
Type: Journal-article
Authors: Alexander W Mauney, Uma M Muthurajan, Karolin Luger, Lois Pollack
Citation: Mauney, A.W. et al., 2021. Solution structure(s) of trinucleosomes from contrast variation SAXS. Nucleic Acids Research, 49(9), pp.5028-5037.
Type: Journal-article
Authors: E. H. Snell, J. R. Helliwell
Citation: Snell, E.H. & Helliwell, J.R., 2021. Microgravity as an environment for macromolecular crystallization - an outlook in the era of space stations and commercial space flight. Crystallography Reviews, pp.1-44.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Mian Yang, Jorvani Cruz Villarreal, Nethmi Ariyasinghe, Rory Kruithoff, Robert Ros, Alexandra Ros
Citation: Yang, M. et al., 2021. Quantitative Approach for Protein Analysis in Small Cell Ensembles by an Integrated Microfluidic Chip with MALDI Mass Spectrometry. Analytical Chemistry, 93(15), pp.6053-6061.
Type: Journal-article
Authors: Darya Marchany‐Rivera, Rafael A. Estremera‐Andújar, Carlos Nieves‐Marrero, Carlos R. Ruiz‐Martínez, William Bauer, Juan López‐Garriga
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Melissa Carrillo, Suraj Pandey, Juan Sanchez, Moraima Noda, Ishwor Poudyal, Luis Aldama, Tek Narsingh Malla, Elin Claesson, Weixiao Yuan Wahlgren, Denisse Feliz, Vukica Šrajer, Michał Maj, Leticia Castillon, So Iwata, Eriko Nango, Rie Tanaka, Tomoyuki Tanaka, Luo Fangjia, Kensuke Tono, Shigeki Owada, Sebastian Westenhoff, Emina A. Stojković, Marius Schmidt
Citation: Carrillo, M. et al., 2021. High-resolution crystal structures of transient intermediates in the phytochrome photocycle. Structure.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Ji-Hye Yun, Xuanxuan Li, Jianing Yue, Jae-Hyun Park, Zeyu Jin, Chufeng Li, Hao Hu, Yingchen Shi, Suraj Pandey, Sergio Carbajo, Sébastien Boutet, Mark S. Hunter, Mengning Liang, Raymond G. Sierra, Thomas J. Lane, Liang Zhou, Uwe Weierstall, Nadia A. Zatsepin, Mio Ohki, Jeremy R. H. Tame, Sam-Yong Park, John C. H. Spence, Wenkai Zhang, Marius Schmidt, Weontae Lee, Haiguang Liu
Citation: Yun, J.-H. et al., 2021. Early-stage dynamics of chloride ion-pumping rhodopsin revealed by a femtosecond X-ray laser. Proceedings of the National Academy of Sciences, 118(13), p.e2020486118.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Saminathan Ramakrishnan, Jason R. Stagno, Chelsie E. Conrad, Jienyu Ding, Ping Yu, Yuba R. Bhandari, Yun-Tzai Lee, Gary Pauly, Oleksandr Yefanov, Max O. Wiedorn, Juraj Knoska, Dominik Oberthür, Thomas A. White, Anton Barty, Valerio Mariani, Chufeng Li, Wolfgang Brehm, William F. Heinz, Valentin Magidson, Stephen Lockett, Mark S. Hunter, Sébastien Boutet, Nadia A. Zatsepin, Xiaobing Zuo, Thomas D. Grant, Suraj Pandey, Marius Schmidt, John C. H. Spence, Henry N. Chapman, Yun-Xing Wang
Citation: Ramakrishnan, S. et al., 2021. Synchronous RNA conformational changes trigger ordered phase transitions in crystals. Nature Communications, 12(1).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Charles L. Brooks, David A. Case, Steve Plimpton, Benoît Roux, David van der Spoel, Emad Tajkhorshid
Citation: Brooks, C.L. et al., 2021. Classical molecular dynamics. The Journal of Chemical Physics, 154(10), p.100401.
Type: Journal-article
Authors: William J. Bauer, Sarah B. Woodruff
Citation: Bauer, W.J. & Woodruff, S.B., 2021. A science education model for large collaborative centers. Structural Dynamics, 8(2), p.020402.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Carlos Sanchez-Cano, Ramon A. Alvarez-Puebla, John M. Abendroth, Tobias Beck, Robert Blick, Yuan Cao, Frank Caruso, Indranath Chakraborty, Henry N. Chapman, Chunying Chen, Bruce E. Cohen, Andre L. C. Conceição, David P. Cormode, Daxiang Cui, Kenneth A. Dawson, Gerald Falkenberg, Chunhai Fan, Neus Feliu, Mingyuan Gao, Elisabetta Gargioni, Claus-C. Glüer, Florian Grüner, Moustapha Hassan, Yong Hu, Yalan Huang, Samuel Huber, Nils Huse, Yanan Kang, Ali Khademhosseini, Thomas F. Keller, Christian Körnig, Nicholas A. Kotov, Dorota Koziej, Xing-Jie Liang, Beibei Liu, Sijin Liu, Yang Liu, Ziyao Liu, Luis M. Liz-Marzán, Xiaowei Ma, Andres Machicote, Wolfgang Maison, Adrian P. Mancuso, Saad Megahed, Bert Nickel, Ferdinand Otto, Cristina Palencia, Sakura Pascarelli, Arwen Pearson, Oula Peñate-Medina, Bing Qi, Joachim Rädler, Joseph J. Richardson, Axel Rosenhahn, Kai Rothkamm, Michael Rübhausen, Milan K. Sanyal, Raymond E. Schaak, Heinz-Peter Schlemmer, Marius Schmidt, Oliver Schmutzler, Theo Schotten, Florian Schulz, A. K. Sood, Kathryn M. Spiers, Theresa Staufer, Dominik M. Stemer, Andreas Stierle, Xing Sun, Gohar Tsakanova, Paul S. Weiss, Horst Weller, Fabian Westermeier, Ming Xu, Huijie Yan, Yuan Zeng, Ying Zhao, Yuliang Zhao, Dingcheng Zhu, Ying Zhu, Wolfgang J. Parak
Citation: Sanchez-Cano, C. et al., 2021. X-ray-Based Techniques to Study the Nano-Bio Interface. ACS Nano, 15(3), pp.3754-3807.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Thomas D. Grant
Citation: Grant, T.D., 2021. Reply to: Limitations of the iterative electron density reconstruction algorithm from solution scattering data. Nature Methods, 18(3), pp.246-248.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Laura Lemel, Katarzyna Nieścierowicz, M. Dolores García-Fernández, Leonardo Darré, Thierry Durroux, Marta Busnelli, Mylène Pezet, Fabrice Rébeillé, Juliette Jouhet, Bernard Mouillac, Carmen Domene, Bice Chini, Vadim Cherezov, Christophe J. Moreau
Citation: Lemel, L. et al., 2021. The ligand-bound state of a G protein-coupled receptor stabilizes the interaction of functional cholesterol molecules. Journal of Lipid Research, 62, p.100059.
Type: Journal-article
Authors: J.P.J. Chen, K.E. Schmidt, J.C.H. Spence, R.A. Kirian
Citation: Chen, J.P.J. et al., 2021. A new solution to the curved Ewald sphere problem for 3D image reconstruction in electron microscopy. Ultramicroscopy, p.113234.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Halilibrahim Ciftci, Hiroshi Tateishi, Kotaro Koiwai, Ryoko Koga, Kensaku Anraku, Kazuaki Monde, Çağdaş Dağ, Ebru Destan, Busra Yuksel, Esra Ayan, Gunseli Yildirim, Merve Yigin, F. Betul Ertem, Alaleh Shafiei, Omur Guven, Sabri O. Besler, Raymond G. Sierra, Chun Hong Yoon, Zhen Su, Mengling Liang, Burcin Acar, Turkan Haliloglu, Masami Otsuka, Fumiaki Yumoto, Mikako Fujita, Toshiya Senda, Hasan DeMirci
Citation: Ciftci, H. et al., 2021. Structural insight into host plasma membrane association and assembly of HIV-1 Matrix protein.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Ethan T. Holleman, Erica Duguid, Lisa J. Keefe, Sarah E. J. Bowman
Citation: Holleman, E.T. et al., 2021. Polo: an open-source graphical user interface for crystallization screening. Journal of Applied Crystallography, 54(2), pp.673-679.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Qiuyun Guo, Jordan R. Yaron, John W. Wallen, Kyle F. Browder, Ryan Boyd, Tien L. Olson, Michelle Burgin, Peaches Ulrich, Emily Aliskevich, Lauren N. Schutz, Petra Fromme, Liqiang Zhang, Alexandra R. Lucas
Citation: Guo, Q. et al., 2021. PEGylated Serp-1 Markedly Reduces Pristane-Induced Experimental Diffuse Alveolar Hemorrhage, Altering uPAR Distribution, and Macrophage Invasion. Frontiers in Cardiovascular Medicine, 8.
Type: Journal-article
Authors: Eduardo R. Cruz-Chú, Ahmad Hosseinizadeh, Ghoncheh Mashayekhi, Russell Fung, Abbas Ourmazd, Peter Schwander
Citation: Cruz-Chú, E.R. et al., 2021. Selecting XFEL single-particle snapshots by geometric machine learning. Structural Dynamics, 8(1), p.014701.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Yen-Lin Chen, Weiwei He, Lois Pollack, Serdal Kirmizialtin
Citation: Chen, Y.-L. et al., 2021. Breaking the Boundary between Solution X-Ray Scattering and Molecular Dynamics Simulations of Structured Nucleic Acids. Biophysical Journal, 120(3), p.315a.
Type: Journal-article
Authors: Premila P. Samuel, David A. Case
Citation: Samuel, P.P. & Case, D.A., 2021. Molecular Dynamics Simulations Unravel the Mysteries of Hemoglobin Diseases. Biophysical Journal, 120(3), p.298a.
Type: Journal-article
Authors: P. Lourdu Xavier, Kartik Ayyer, Oleksandr Yefanov, Luca Gelisio, Johan Bielecki, Amit K. Samanta, Saša Bajt, Ruojie Sha, David A. Bushnell, Roger D. Kornberg, Yevheniy Ovcharenko, Jochen Kuepper, Michael Meyer, Nadrian C. Seeman, Henry N. Chapman
Citation: Xavier, P.L. et al., 2021. Femtosecond Single-Particle Diffractive Imaging of 3D DNA-Origami Molecular Scaffolds with XFEL Pulses. Biophysical Journal, 120(3), p.265a.
Type: Journal-article
Authors: Thomas D. Grant, Suchithranga M.D.C. Perera, Leslie A. Salas-Estrada, Andrey V. Struts, Udeep Chawla, Steven D.E. Fried, Nipuna Weerasinghe, Kostantinos Karpos, Domingo Meza, Nadia A. Zatsepin, Alan Grossfield, Derek Mendez, Petra Fromme, Richard A. Kirian, Michael F. Brown
Citation: Grant, T.D. et al., 2021. Ultrafast Membrane Protein Dynamics Revealed by X-Ray Scattering with a Femtosecond Free-Electron Laser. Biophysical Journal, 120(3), p.133a.
Type: Journal-article
Authors: C. Swathi K. Menon, Konstantinos Karpos, Thomas D. Grant, Andrey V. Struts, Steven D.E. Fried, Suchithranga M.D.C. Perera, Irina V. Kosheleva, Leslie Salas-Estrada, Alan Grossfield, Petra Fromme, Richard A. Kirian, Michael F. Brown
Citation: Menon, C.S.K. et al., 2021. Functional Expansion of G-Protein-Coupled Receptor Shown by Time-Resolved X-Ray Scattering. Biophysical Journal, 120(3), p.132a.
Type: Journal-article
Authors: Viktoriia Shaulskaia, Aleksandra Luginina, Polina Khorn, Anastasiia Gusach, Olga Sukhacheva, Ekaterina Smirnova, Valentin Borshchevskiy, Alexey Mishin, Vadim Cherezov
Citation: Shaulskaia, V. et al., 2021. Sodium Binding in Cysteinyl Leukotriene G Protein-Coupled Receptors. Biophysical Journal, 120(3), p.129a.
Type: Journal-article
Authors: Heqiao Zhang, Dong-Hua Chen, Rayees U.H. Mattoo, David A. Bushnell, Yannan Wang, Chao Yuan, Lin Wang, Chunnian Wang, Ralph E. Davis, Yan Nie, Roger D. Kornberg
Type: Journal-article
Authors: L.E. Malin, W.S. Graves, M. Holl, J.C.H. Spence, E.A. Nanni, R.K. Li, X. Shen, S. Weathersby
Citation: Malin, L.E. et al., 2021. Quantitative agreement between dynamical rocking curves in ultrafast electron diffraction for x-ray lasers. Ultramicroscopy, 223, p.113211.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Catherine L. Lawson, Andriy Kryshtafovych, Paul D. Adams, Pavel V. Afonine, Matthew L. Baker, Benjamin A. Barad, Paul Bond, Tom Burnley, Renzhi Cao, Jianlin Cheng, Grzegorz Chojnowski, Kevin Cowtan, Ken A. Dill, Frank DiMaio, Daniel P. Farrell, James S. Fraser, Mark A. Herzik, Soon Wen Hoh, Jie Hou, Li-Wei Hung, Maxim Igaev, Agnel P. Joseph, Daisuke Kihara, Dilip Kumar, Sumit Mittal, Bohdan Monastyrskyy, Mateusz Olek, Colin M. Palmer, Ardan Patwardhan, Alberto Perez, Jonas Pfab, Grigore D. Pintilie, Jane S. Richardson, Peter B. Rosenthal, Daipayan Sarkar, Luisa U. Schäfer, Michael F. Schmid, Gunnar F. Schröder, Mrinal Shekhar, Dong Si, Abishek Singharoy, Genki Terashi, Thomas C. Terwilliger, Andrea Vaiana, Liguo Wang, Zhe Wang, Stephanie A. Wankowicz, Christopher J. Williams, Martyn Winn, Tianqi Wu, Xiaodi Yu, Kaiming Zhang, Helen M. Berman, Wah Chiu
Citation: Lawson, C.L. et al., 2021. Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge. Nature Methods, 18(2), pp.156-164.
Type: Journal-article
Authors: Iosifina Sarrou, Christian G. Feiler, Sven Falke, Nolan Peard, Oleksandr Yefanov, Henry Chapman
Citation: Sarrou, I. et al., 2021. C-phycocyanin as a highly attractive model system in protein crystallography: unique crystallization properties and packing-diversity screening. Acta Crystallographica Section D Structural Biology, 77(2), pp.224-236.
Type: Journal-article
Authors: Jonathan K. Williams, Baifan Wang, Andrew Sam, Cody L. Hoop, David A. Case, Jean Baum
Citation: Williams, J.K. et al., 2021. Molecular Dynamics Analysis of a Flexible Loop at the Binding Interface of the SARS-CoV-2 Spike Protein Receptor-Binding Domain.
Type: Posted-content
Authors: James Geiger, Rick Sexton, Zina Al-Sahouri, Ming-Yue Lee, Eugene Chun, Kaleeckal G. Harikumar, Laurence J. Miller, Oliver Beckstein, Wei Liu
Citation: Geiger, J. et al., 2021. Evidence that specific interactions play a role in the cholesterol sensitivity of G protein-coupled receptors. Biochimica et Biophysica Acta (BBA) - Biomembranes, p.183557.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Israel Rodríguez, Ritika Gautam, Arthur D. Tinoco
Citation: Rodríguez, I., Gautam, R. & Tinoco, A.D., 2020. Using X-ray Diffraction Techniques for Biomimetic Drug Development, Formulation, and Polymorphic Characterization. Biomimetics, 6(1), p.1.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Filip Yabukarski, Justin T. Biel, Margaux M. Pinney, Tzanko Doukov, Alexander S. Powers, James S. Fraser, Daniel Herschlag
Citation: Yabukarski, F. et al., 2020. Assessment of enzyme active site positioning and tests of catalytic mechanisms through X-ray-derived conformational ensembles. Proceedings of the National Academy of Sciences, 117(52), pp.33204-33215.
Type: Journal-article
Authors: Hannes Braberg, Ignacia Echeverria, Stefan Bohn, Peter Cimermancic, Anthony Shiver, Richard Alexander, Jiewei Xu, Michael Shales, Raghuvar Dronamraju, Shuangying Jiang, Gajendradhar Dwivedi, Derek Bogdanoff, Kaitlin K. Chaung, Ruth Hüttenhain, Shuyi Wang, David Mavor, Riccardo Pellarin, Dina Schneidman, Joel S. Bader, James S. Fraser, John Morris, James E. Haber, Brian D. Strahl, Carol A. Gross, Junbiao Dai, Jef D. Boeke, Andrej Sali, Nevan J. Krogan
Citation: Braberg, H. et al., 2020. Genetic interaction mapping informs integrative structure determination of protein complexes. Science, 370(6522), p.eaaz4910.
Type: Journal-article
Authors: Ryan S. Edmonds, Tanner J. Finney, Michael R. Bull, Aude A. Watrelot, Tonya L. Kuhl
Citation: Edmonds, R.S. et al., 2021. Friction measurements of model saliva-wine solutions between polydimethylsiloxane surfaces. Food Hydrocolloids, 113, p.106522.
Type: Journal-article
Authors: Markus Metz, Romain D. Arnal, Wolfgang Brehm, Henry N. Chapman, Andrew J. Morgan, Rick P. Millane
Citation: Metz, M. et al., 2021. Macromolecular phasing using diffraction from multiple crystal forms. Acta Crystallographica Section A Foundations and Advances, 77(1), pp.19-35.
Type: Journal-article
Authors: Huijong Han, Ekaterina Round, Robin Schubert, Yasmin Gül, Jana Makroczyová, Domingo Meza, Philipp Heuser, Martin Aepfelbacher, Imrich Barák, Christian Betzel, Petra Fromme, Inari Kursula, Poul Nissen, Elena Tereschenko, Joachim Schulz, Charlotte Uetrecht, Jozef Ulicný, Matthias Wilmanns, Janos Hajdu, Victor S. Lamzin, Kristina Lorenzen
Citation: Han, H. et al., 2021. The XBI BioLab for life science experiments at the European XFEL. Journal of Applied Crystallography, 54(1), pp.7-21.
Type: Journal-article
Authors: Suraj Pandey, George Calvey, Andrea M. Katz, Tek Narsingh Malla, Faisal H. M. Koua, Jose M. Martin-Garcia, Ishwor Poudyal, Jay-How Yang, Mohammad Vakili, Oleksandr Yefanov, Kara A. Zielinski, Saša Bajt, Salah Awel, Katerina Dörner, Matthias Frank, Luca Gelisio, Rebecca Jernigan, Henry Kirkwood, Marco Kloos, Jayanath Koliyadu, Valerio Mariani, Mitchell D. Miller, Grant Mills, Garrett Nelson, Jose L. Olmos, Alireza Sadri, Tokushi Sato, Alexandra Tolstikova, Weijun Xu, Abbas Ourmazd, John H. C. Spence, Peter Schwander, Anton Barty, Henry N. Chapman, Petra Fromme, Adrian P. Mancuso, George N. Phillips, Richard Bean, Lois Pollack, Marius Schmidt
Citation: Pandey, S. et al., 2020. Direct Observation of the Mechanism of Antibiotic Resistance by Mix-and-Inject at the European XFEL.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Mohamed Abdellatif-Youssef, Martin Etter, Petra Fromme, Marco Salerno
Citation: Abdellatif-Youssef, M. et al., 2021. Extended properties of magnetic spins of zinc ferrite nanoparticles in the THz frequency range. Journal of Magnetism and Magnetic Materials, 525, p.167574.
Type: Journal-article
Authors: Kartik Ayyer, P. Lourdu Xavier, Johan Bielecki, Zhou Shen, Benedikt J. Daurer, Amit K. Samanta, Salah Awel, Richard Bean, Anton Barty, Martin Bergemann, Tomas Ekeberg, Armando D. Estillore, Hans Fangohr, Klaus Giewekemeyer, Mark S. Hunter, Mikhail Karnevskiy, Richard A. Kirian, Henry Kirkwood, Yoonhee Kim, Jayanath Koliyadu, Holger Lange, Romain Letrun, Jannik Lübke, Thomas Michelat, Andrew J. Morgan, Nils Roth, Tokushi Sato, Marcin Sikorski, Florian Schulz, John C. H. Spence, Patrik Vagovic, Tamme Wollweber, Lena Worbs, Oleksandr Yefanov, Yulong Zhuang, Filipe R. N. C. Maia, Daniel A. Horke, Jochen Küpper, N. Duane Loh, Adrian P. Mancuso, Henry N. Chapman
Citation: Ayyer, K. et al., 2020. 3D diffractive imaging of nanoparticle ensembles using an x-ray laser. Optica, 8(1), p.15.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Renee Otten, Ricardo A. P. Pádua, H. Adrian Bunzel, Vy Nguyen, Warintra Pitsawong, MacKenzie Patterson, Shuo Sui, Sarah L. Perry, Aina E. Cohen, Donald Hilvert, Dorothee Kern
Citation: Otten, R. et al., 2020. How directed evolution reshapes the energy landscape in an enzyme to boost catalysis. Science, p.eabd3623.
Type: Journal-article
Authors: Haoyuan Li, Reza Nazari, Brian Abbey, Roberto Alvarez, Andrew Aquila, Kartik Ayyer, Anton Barty, Peter Berntsen, Johan Bielecki, Alberto Pietrini, Maximilian Bucher, Gabriella Carini, Henry N. Chapman, Alice Contreras, Benedikt J. Daurer, Hasan DeMirci, Leonie Flűckiger, Matthias Frank, Janos Hajdu, Max F. Hantke, Brenda G. Hogue, Ahmad Hosseinizadeh, Mark S. Hunter, H. Olof Jönsson, Richard A. Kirian, Ruslan P. Kurta, Duane Loh, Filipe R. N. C. Maia, Adrian P. Mancuso, Andrew J. Morgan, Matthew McFadden, Kerstin Muehlig, Anna Munke, Hemanth Kumar Narayana Reddy, Carl Nettelblad, Abbas Ourmazd, Max Rose, Peter Schwander, M. Marvin Seibert, Jonas A. Sellberg, Raymond G. Sierra, Zhibin Sun, Martin Svenda, Ivan A. Vartanyants, Peter Walter, Daniel Westphal, Garth Williams, P. Lourdu Xavier, Chun Hong Yoon, Sahba Zaare
Citation: Li, H. et al., 2020. Diffraction data from aerosolized Coliphage PR772 virus particles imaged with the Linac Coherent Light Source. Scientific Data, 7(1).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Blake T. Riley, Stephanie A. Wankowicz, Saulo H. P. Oliveira, Gydo C. P. Zundert, Daniel W. Hogan, James S. Fraser, Daniel A. Keedy, Henry Bedem
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Timothy R. Stachowski, Mary E. Snell, Edward H. Snell
Citation: Stachowski, T.R., Snell, M.E. & Snell, E.H., 2020. SAXS studies of X-ray induced disulfide bond damage: Engineering high-resolution insight from a low-resolution technique T. J. Boggon, ed. PLOS ONE, 15(11), p.e0239702.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: A. Hosseinizadeh, N. Breckwoldt, R. Fung, R. Sepehr, M. Schmidt, P. Schwander, R. Santra, A. Ourmazd
Citation: Hosseinizadeh, A. et al., 2020. Single-femtosecond atomic-resolution observation of a protein traversing a conical intersection.
Type: Posted-content
Authors: Suzette A. Pabit, Yen-Lin Chen, Emery T. Usher, Erik C. Cook, Lois Pollack, Scott A. Showalter
Citation: Pabit, S.A. et al., 2020. Elucidating the Role of Microprocessor Protein DGCR8 in Bending RNA Structures. Biophysical Journal, 119(12), pp.2524-2536.
Type: Journal-article
Authors: Tobias Krojer, James S Fraser, Frank von Delft
Citation: Krojer, T., Fraser, J.S. & von Delft, F., 2020. Discovery of allosteric binding sites by crystallographic fragment screening. Current Opinion in Structural Biology, 65, pp.209-216.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Christopher Gisriel, Petra Fromme, Jose M. Martin-Garcia
Citation: Gisriel, C., Fromme, P. & Martin-Garcia, J.M., 2020. Methods for Crystallization and Structural Determination of M-T7 Protein from Myxoma Virus. Viruses as Therapeutics, pp.125-162.
Type: Book-chapter
Authors: Shikai Jin, Mitchell D. Miller, Mingchen Chen, Nicholas P. Schafer, Xingcheng Lin, Xun Chen, George N. Phillips, Peter G. Wolynes
Citation: Jin, S. et al., 2020. Molecular-replacement phasing using predicted protein structures from AWSEM-Suite. IUCrJ, 7(6), pp.1168-1178.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Xingjie Pan, Michael C. Thompson, Yang Zhang, Lin Liu, James S. Fraser, Mark J. S. Kelly, Tanja Kortemme
Citation: Pan, X. et al., 2020. Expanding the space of protein geometries by computational design of de novo fold families. Science, 369(6507), pp.1132-1136.
Type: Journal-article
Authors: D Koulentianos, A E A Fouda, S H Southworth, J D Bozek, J Küpper, R Santra, N V Kryzhevoi, L S Cederbaum, C Bostedt, M Messerschmidt, N Berrah, L Fang, B Murphy, T Osipov, J P Cryan, J Glownia, S Ghimire, P J Ho, B Krässig, D Ray, Y Li, E P Kanter, L Young, G Doumy
Citation: Koulentianos, D. et al., 2020. High intensity x-ray interaction with a model bio-molecule system: double-core-hole states and fragmentation of formamide. Journal of Physics B: Atomic, Molecular and Optical Physics, 53(24), p.244005.
Type: Journal-article
Authors: Dameli Assalauova, Young Yong Kim, Sergey Bobkov, Ruslan Khubbutdinov, Max Rose, Roberto Alvarez, Jakob Andreasson, Eugeniu Balaur, Alice Contreras, Hasan DeMirci, Luca Gelisio, Janos Hajdu, Mark S. Hunter, Ruslan P. Kurta, Haoyuan Li, Matthew McFadden, Reza Nazari, Peter Schwander, Anton Teslyuk, Peter Walter, P. Lourdu Xavier, Chun Hong Yoon, Sahba Zaare, Viacheslav A. Ilyin, Richard A. Kirian, Brenda G. Hogue, Andrew Aquila, Ivan A. Vartanyants
Citation: Assalauova, D. et al., 2020. An advanced workflow for single-particle imaging with the limited data at an X-ray free-electron laser. IUCrJ, 7(6), pp.1102-1113.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Ming-Yue Lee, James Geiger, Andrii Ishchenko, Gye Won Han, Anton Barty, Thomas A. White, Cornelius Gati, Alexander Batyuk, Mark S. Hunter, Andrew Aquila, Sébastien Boutet, Uwe Weierstall, Vadim Cherezov, Wei Liu
Citation: Lee, M.-Y. et al., 2020. Harnessing the power of an X-ray laser for serial crystallography of membrane proteins crystallized in lipidic cubic phase. IUCrJ, 7(6), pp.976-984.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Justin F. Lucas, Milton L. Chip Routt, Jonathan G. Eastman
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Megan L. Shelby, Deepshika Gilbile, Thomas D. Grant, William J. Bauer, Brent Segelke, Wei He, Angela C. Evans, Natalia Crespo, Pontus Fischer, Tim Pakendorf, Vincent Hennicke, Mark S. Hunter, Alex Batyuk, Miriam Barthelmess, Alke Meents, Tonya L. Kuhl, Matthias Frank, Matthew A. Coleman
Citation: Shelby, M.L. et al., 2020. Crystallization of ApoA1 and ApoE4 Nanolipoprotein Particles and Initial XFEL-Based Structural Studies. Crystals, 10(10), p.886.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Qi Li, Jenna Pellegrino, D. John Lee, Arthur A. Tran, Hector A. Chaires, Ruoxi Wang, Jesslyn E. Park, Kaijie Ji, David Chow, Na Zhang, Axel F. Brilot, Justin T. Biel, Gydo van Zundert, Kenneth Borrelli, Dean Shinabarger, Cindy Wolfe, Beverly Murray, Matthew P. Jacobson, Estelle Mühle, Olivier Chesneau, James S. Fraser, Ian B. Seiple
Citation: Li, Q. et al., 2020. Synthetic group A streptogramin antibiotics that overcome Vat resistance. Nature, 586(7827), pp.145-150.
Type: Journal-article
Authors: Aron Broom, Rojo V. Rakotoharisoa, Michael C. Thompson, Niayesh Zarifi, Erin Nguyen, Nurzhan Mukhametzhanov, Lin Liu, James S. Fraser, Roberto A. Chica
Citation: Broom, A. et al., 2020. Ensemble-based enzyme design can recapitulate the effects of laboratory directed evolution in silico. Nature Communications, 11(1).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: T. Burian, J. Chalupský, V. Hájková, M. Toufarová, V. Vorlíček, S. Hau-Riege, J. Krzywinski, J.D. Bozek, C. Bostedt, A.T. Graf, U.F. Jastrow, S. Kreis, R.A. London, M. Messerschmidt, S. Moeller, R. Sobierajski, K. Tiedtke, M. de Grazia, T. Auguste, B. Carré, S. Guizard, H. Merdji, N. Medvedev, L. Juha
Citation: Burian, T. et al., 2020. Subthreshold Erosion of an Organic Polymer Induced by Multiple Shots of an X-Ray Free-Electron Laser. Physical Review Applied, 14(3).
Type: Journal-article
Authors: George D. Calvey, Andrea M. Katz, Kara A. Zielinski, Boris Dzikovski, Lois Pollack
Citation: Calvey, G.D. et al., 2020. Characterizing Enzyme Reactions in Microcrystals for Effective Mix-and-Inject Experiments using X-ray Free-Electron Lasers. Analytical Chemistry, 92(20), pp.13864-13870.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Ali Dashti, Ghoncheh Mashayekhi, Mrinal Shekhar, Danya Ben Hail, Salah Salah, Peter Schwander, Amedee des Georges, Abhishek Singharoy, Joachim Frank, Abbas Ourmazd
Citation: Dashti, A. et al., 2020. Retrieving functional pathways of biomolecules from single-particle snapshots. Nature Communications, 11(1).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Melissa Carrillo, Suraj Pandey, Juan Sanchez, Moraima Noda, Ishwor Poudyal, Luis Aldama, Tek Narsingh Malla, Elin Claesson, Weixiao Yuan Wahlgren, Denisse Feliz, Vukica Šrajer, Michal Maj, Leticia Castillon, So Iwata, Eriko Nango, Rie Tanaka, Tomoyuki Tanaka, Luo Fangjia, Kensuke Tono, Shigeki Owada, Sebastian Westenhoff, Emina A. Stojković, Marius Schmidt
Citation: Carrillo, M. et al., 2020. High-resolution Crystal Structures of Transient Intermediates in the Phytochrome Photocycle.
Type: Posted-content
Authors: Austin Echelmeier, Jorvani Cruz Villarreal, Marc Messerschmidt, Daihyun Kim, Jesse D. Coe, Darren Thifault, Sabine Botha, Ana Egatz-Gomez, Sahir Gandhi, Gerrit Brehm, Chelsie E. Conrad, Debra T. Hansen, Caleb Madsen, Saša Bajt, J. Domingo Meza-Aguilar, Dominik Oberthür, Max O. Wiedorn, Holger Fleckenstein, Derek Mendez, Juraj Knoška, Jose M. Martin-Garcia, Hao Hu, Stella Lisova, Aschkan Allahgholi, Yaroslav Gevorkov, Kartik Ayyer, Steve Aplin, Helen Mary Ginn, Heinz Graafsma, Andrew J. Morgan, Dominic Greiffenberg, Alexander Klujev, Torsten Laurus, Jennifer Poehlsen, Ulrich Trunk, Davide Mezza, Bernd Schmidt, Manuela Kuhn, Raimund Fromme, Jolanta Sztuk-Dambietz, Natascha Raab, Steffen Hauf, Alessandro Silenzi, Thomas Michelat, Chen Xu, Cyril Danilevski, Andrea Parenti, Leonce Mekinda, Britta Weinhausen, Grant Mills, Patrik Vagovic, Yoonhee Kim, Henry Kirkwood, Richard Bean, Johan Bielecki, Stephan Stern, Klaus Giewekemeyer, Adam R. Round, Joachim Schulz, Katerina Dörner, Thomas D. Grant, Valerio Mariani, Anton Barty, Adrian P. Mancuso, Uwe Weierstall, John C. H. Spence, Henry N. Chapman, Nadia Zatsepin, Petra Fromme, Richard A. Kirian, Alexandra Ros
Citation: Echelmeier, A. et al., 2020. Segmented flow generator for serial crystallography at the European X-ray free electron laser. Nature Communications, 11(1).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Serdar Durdagi, Cagdas Dag, Berna Dogan, Merve Yigin, Timucin Avsar, Cengizhan Buyukdag, Ismail Erol, Betul Ertem, Seyma Calis, Gunseli Yildirim, Muge D. Orhan, Omur Guven, Busecan Aksoydan, Ebru Destan, Kader Sahin, Sabri O. Besler, Lalehan Oktay, Alaleh Shafiei, Ilayda Tolu, Esra Ayan, Busra Yuksel, Ayse B. Peksen, Oktay Gocenler, Ali D. Yucel, Ozgur Can, Serena Ozabrahamyan, Alpsu Olkan, Ece Erdemoglu, Fulya Aksit, Gokhan Tanisali, Oleksandr M. Yefanov, Anton Barty, Alexandra Tolstikova, Gihan K. Ketawala, Sabine Botha, E. Han Dao, Brandon Hayes, Mengning Liang, Matthew H. Seaberg, Mark S. Hunter, Alex Batyuk, Valerio Mariani, Zhen Su, Frederic Poitevin, Chun Hong Yoon, Christopher Kupitz, Raymond G. Sierra, Edward Snell, Hasan DeMirci
Citation: Durdagi, S. et al., 2020. Near-Physiological-Temperature Serial Femtosecond X-ray Crystallography Reveals Novel Conformations of SARS-CoV-2 Main Protease Active Site for Improved Drug Repurposing.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Josué A. Benjamín-Rivera, Andrés E. Cardona-Rivera, Ángel L. Vázquez-Maldonado, Christian Y. Dones-Lassalle, Héctor L. Pabón-Colon, Héctor M. Rodríguez-Rivera, Israel Rodríguez, Jean C. González-Espiet, Jessika Pazol, Jobaniel D. Pérez-Ríos, José F. Catala-Torres, Marielie Carrasquillo Rivera, Michael G. De Jesus-Soto, Nicolle A. Cordero-Virella, Paola M. Cruz-Maldonado, Patricia González-Pagan, Raul Hernández-Ríos, Kavita Gaur, Sergio A. Loza-Rosas, Arthur D. Tinoco
Citation: Benjamín-Rivera, J.A. et al., 2020. Exploring Serum Transferrin Regulation of Nonferric Metal Therapeutic Function and Toxicity. Inorganics, 8(9), p.48.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jonathan A. Clinger, Xiachang Wang, Wenlong Cai, Yanyan Zhu, Mitchell D. Miller, Chang‐Guo Zhan, Steven G. Van Lanen, Jon S. Thorson, George N. Phillips
Citation: Clinger, J.A. et al., 2020. The crystal structure ofAbsH3: A putative flavin adenine dinucleotide‐dependent reductase in the abyssomicin biosynthesis pathway. Proteins: Structure, Function, and Bioinformatics, 89(1), pp.132-137.
Type: Journal-article
Authors: Rafael Maldonado-Hernández, Orestes Quesada, José A. Lasalde-Dominicci
Citation: Maldonado-Hernández, R., Quesada, O. & Lasalde-Dominicci, J.A., 2020. Biophysical characterization dataset of native nicotinic acetylcholine receptor in lipid-like detergent complexes. Data in Brief, 32, p.106230.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Sarah A. H. Hulgan, Abhishek A. Jalan, I-Che Li, Douglas R. Walker, Mitchell D. Miller, Abigael J. Kosgei, Weijun Xu, George N. Phillips, Jeffrey D. Hartgerink
Citation: Hulgan, S.A.H. et al., 2020. Covalent Capture of Collagen Triple Helices Using Lysine-Aspartate and Lysine-Glutamate Pairs. Biomacromolecules, 21(9), pp.3772-3781.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: David P. Klebl, Molly S.C. Gravett, Dimitrios Kontziampasis, David J. Wright, Robin S. Bon, Diana C.F. Monteiro, Martin Trebbin, Frank Sobott, Howard D. White, Michele C. Darrow, Rebecca F. Thompson, Stephen P. Muench
Citation: Klebl, D.P. et al., 2020. Need for Speed: Examining Protein Behavior during CryoEM Grid Preparation at Different Timescales. Structure, 28(11), pp.1238-1248.e4.
Type: Journal-article
Authors: Yen-Lin Chen, Lois Pollack
Citation: Chen, Y.-L. & Pollack, L., 2020. Machine learning deciphers structural features of RNA duplexes measured with solution X-ray scattering. IUCrJ, 7(5).
Type: Journal-article
Authors: Mohammad Vakili, Ramakrishna Vasireddi, Paul V. Gwozdz, Diana C. F. Monteiro, Michael Heymann, Robert H. Blick, Martin Trebbin
Citation: Vakili, M. et al., 2020. Microfluidic polyimide gas dynamic virtual nozzles for serial crystallography. Review of Scientific Instruments, 91(8), p.085108.
Type: Journal-article
Authors: Yanyang Tang, Justin Saul, Nirupa Nagaratnam, Jose M. Martin-Garcia, Petra Fromme, Ji Qiu, Joshua LaBaer
Citation: Tang, Y. et al., 2020. Construction of gateway-compatible baculovirus expression vectors for high-throughput protein expression and in vivo microcrystal screening. Scientific Reports, 10(1).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jeffrey J. Donatelli, John C. H. Spence
Citation: Donatelli, J.J. & Spence, J.C.H., 2020. Inversion of Many-Beam Bragg Intensities for Phasing by Iterated Projections: Removal of Multiple Scattering Artifacts from Diffraction Data. Physical Review Letters, 125(6).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Lan Zhu, Guanhong Bu, Liang Jing, Dan Shi, Ming-Yue Lee, Tamir Gonen, Wei Liu, Brent L. Nannenga
Citation: Zhu, L. et al., 2020. Structure Determination from Lipidic Cubic Phase Embedded Microcrystals by MicroED. Structure, 28(10), pp.1149-1159.e4.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Ghoncheh Mashayekhi, Ali Dashti, Peter Schwander, Abbas Ourmazd
Citation: Mashayekhi, G. et al., 2020. From Static Structures to Continuous Conformational Changes on the Energy Landscapes. Microscopy and Microanalysis, 26(S2), pp.1614-1615.
Type: Journal-article
Authors: Suraj Pandey, Ishwor Poudyal, Tek Narsingh Malla
Citation: Pandey, S., Poudyal, I. & Malla, T.N., 2020. Pump-Probe Time-Resolved Serial Femtosecond Crystallography at X-Ray Free Electron Lasers. Crystals, 10(7), p.628.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Andrew J. Morgan, Kevin T. Murray, Mauro Prasciolu, Holger Fleckenstein, Oleksandr Yefanov, Pablo Villanueva-Perez, Valerio Mariani, Martin Domaracky, Manuela Kuhn, Steve Aplin, Istvan Mohacsi, Marc Messerschmidt, Karolina Stachnik, Yang Du, Anja Burkhart, Alke Meents, Evgeny Nazaretski, Hanfei Yan, Xiaojing Huang, Yong S. Chu, Henry N. Chapman, Saša Bajt
Citation: Morgan, A.J. et al., 2020. Ptychographic X-ray speckle tracking with multi-layer Laue lens systems. Journal of Applied Crystallography, 53(4), pp.927-936.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Michael C. Thompson, Todd O. Yeates, Jose A. Rodriguez
Citation: Thompson, M.C., Yeates, T.O. & Rodriguez, J.A., 2020. Advances in methods for atomic resolution macromolecular structure determination. F1000Research, 9, p.667.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Reza Nazari, Sahba Zaare, Roberto C. Alvarez, Konstantinos Karpos, Trent Engelman, Caleb Madsen, Garrett Nelson, John C. H. Spence, Uwe Weierstall, Ronald J. Adrian, Richard A. Kirian
Citation: Nazari, R. et al., 2020. 3D printing of gas-dynamic virtual nozzles and optical characterization of high-speed microjets. Optics Express, 28(15), p.21749.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Y. Kim, A. Ourmazd
Citation: Kim, Y. & Ourmazd, A., 1990. Diffusion in multilayers, studied by quantitative chemical mapping at the atomic level. Proceedings, annual meeting, Electron Microscopy Society of America, 48(4), pp.354-355.
Type: Journal-article
Authors: Chris S. Thomas, Doug R. Braun, Jose Luis Olmos, Scott R. Rajski, George N. Phillips, David Andes, Tim S. Bugni
Citation: Thomas, C.S. et al., 2020. Pyridine-2,6-Dithiocarboxylic Acid and Its Metal Complexes: New Inhibitors of New Delhi Metallo β-Lactamase-1. Marine Drugs, 18(6), p.295.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Mohammad Towshif Rabbani, Mukul Sonker, Alexandra Ros
Citation: Rabbani, M.T., Sonker, M. & Ros, A., 2020. Carbon nanotube dielectrophoresis: Theory and applications. ELECTROPHORESIS.
Type: Journal-article
Authors: Nirupa Nagaratnam, Yanyang Tang, Sabine Botha, Justin Saul, Chufeng Li, Hao Hu, Sahba Zaare, Mark Hunter, David Lowry, Uwe Weierstall, Nadia Zatsepin, John C. H. Spence, Ji Qiu, Joshua LaBaer, Petra Fromme, Jose M. Martin-Garcia
Citation: Nagaratnam, N. et al., 2020. Enhanced X-ray diffraction of in vivo-grown μNS crystals by viscous jets at XFELs. Acta Crystallographica Section F Structural Biology Communications, 76(6), pp.278-289.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Egor Sobolev, Sergei Zolotarev, Klaus Giewekemeyer, Johan Bielecki, Kenta Okamoto, Hemanth K. N. Reddy, Jakob Andreasson, Kartik Ayyer, Imrich Barak, Sadia Bari, Anton Barty, Richard Bean, Sergey Bobkov, Henry N. Chapman, Grzegorz Chojnowski, Benedikt J. Daurer, Katerina Dörner, Tomas Ekeberg, Leonie Flückiger, Oxana Galzitskaya, Luca Gelisio, Steffen Hauf, Brenda G. Hogue, Daniel A. Horke, Ahmad Hosseinizadeh, Vyacheslav Ilyin, Chulho Jung, Chan Kim, Yoonhee Kim, Richard A. Kirian, Henry Kirkwood, Olena Kulyk, Jochen Küpper, Romain Letrun, N. Duane Loh, Kristina Lorenzen, Marc Messerschmidt, Kerstin Mühlig, Abbas Ourmazd, Natascha Raab, Andrei V. Rode, Max Rose, Adam Round, Takushi Sato, Robin Schubert, Peter Schwander, Jonas A. Sellberg, Marcin Sikorski, Alessandro Silenzi, Changyong Song, John C. H. Spence, Stephan Stern, Jolanta Sztuk-Dambietz, Anthon Teslyuk, Nicusor Timneanu, Martin Trebbin, Charlotte Uetrecht, Britta Weinhausen, Garth J. Williams, P. Lourdu Xavier, Chen Xu, Ivan A. Vartanyants, Victor S. Lamzin, Adrian Mancuso, Filipe R. N. C. Maia
Citation: Sobolev, E. et al., 2020. Megahertz single-particle imaging at the European XFEL. Communications Physics, 3(1).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Wei Wu, Ross A. Okimoto, Collin Michael Blakely, James Fraser, Trever G. Bivona
Citation: Wu, W. et al., 2020. Targeted DNA sequencing analysis to reveal genetic diversity and androgen-receptor alteration in advanced EGFR mutant lung adenocarcinoma. Journal of Clinical Oncology, 38(15_suppl), pp.9526-9526.
Type: Journal-article
Authors: Grant Mills, Richard Bean, Adrian P. Mancuso
Type: Journal-article
Authors: Mohammad T. Rabbani, Christoph F. Schmidt, Alexandra Ros
Citation: Rabbani, M.T., Schmidt, C.F. & Ros, A., 2020. Length-Selective Dielectrophoretic Manipulation of Single-Walled Carbon Nanotubes. Analytical Chemistry.
Type: Journal-article
Authors: Abbas Ourmazd
Citation: Ourmazd, A., 2020. Science in the age of machine learning. Nature Reviews Physics.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Ian J. Campbell, Jose Luis Olmos, Weijun Xu, Dimithree Kahanda, Joshua T Atkinson, Othneil Noble Sparks, Mitchell D. Miller, George N Phillips, George N. Bennett, Jonathan J. Silberg
Citation: Campbell, I.J. et al., 2020. Prochlorococcus phage ferredoxin: Structural characterization and electron transfer to cyanobacterial sulfite reductases. Journal of Biological Chemistry, p.jbc.RA120.013501.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Tokushi Sato, Romain Letrun, Henry J. Kirkwood, Jia Liu, Patrik Vagovič, Grant Mills, Yoonhee Kim, Cedric M. S. Takem, Marc Planas, Moritz Emons, Tomasz Jezynski, Guido Palmer, Max Lederer, Sebastian Schulz, Jost Mueller, Holger Schlarb, Alessandro Silenzi, Gabriele Giovanetti, Andrea Parenti, Martin Bergemann, Thomas Michelat, Janusz Szuba, Jan Grünert, Henry N. Chapman, Adrian P. Mancuso
Citation: Sato, T. et al., 2020. Femtosecond timing synchronization at megahertz repetition rates for an x-ray free-electron laser. Optica, 7(6), p.716.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Richard A. Kirian, Henry N. Chapman
Citation: Kirian, R.A. & Chapman, H.N., 2020. Imaging of Objects by Coherent Diffraction of X-Ray Free-Electron Laser Pulses. Synchrotron Light Sources and Free-Electron Lasers, pp.1337-1397.
Type: Book-chapter
Authors: LaRinda A. Holland, Emily A. Kaelin, Rabia Maqsood, Bereket Estifanos, Lily I. Wu, Arvind Varsani, Rolf U. Halden, Brenda G. Hogue, Matthew Scotch, Efrem S. Lim
Citation: Holland, L.A. et al., 2020. An 81-Nucleotide Deletion in SARS-CoV-2 ORF7a Identified from Sentinel Surveillance in Arizona (January to March 2020) T. Gallagher, ed. Journal of Virology, 94(14).
Type: Journal-article
Authors: David E. Gordon, Gwendolyn M. Jang, Mehdi Bouhaddou, Jiewei Xu, Kirsten Obernier, Kris M. White, Matthew J. O’Meara, Veronica V. Rezelj, Jeffrey Z. Guo, Danielle L. Swaney, Tia A. Tummino, Ruth Hüttenhain, Robyn M. Kaake, Alicia L. Richards, Beril Tutuncuoglu, Helene Foussard, Jyoti Batra, Kelsey Haas, Maya Modak, Minkyu Kim, Paige Haas, Benjamin J. Polacco, Hannes Braberg, Jacqueline M. Fabius, Manon Eckhardt, Margaret Soucheray, Melanie J. Bennett, Merve Cakir, Michael J. McGregor, Qiongyu Li, Bjoern Meyer, Ferdinand Roesch, Thomas Vallet, Alice Mac Kain, Lisa Miorin, Elena Moreno, Zun Zar Chi Naing, Yuan Zhou, Shiming Peng, Ying Shi, Ziyang Zhang, Wenqi Shen, Ilsa T. Kirby, James E. Melnyk, John S. Chorba, Kevin Lou, Shizhong A. Dai, Inigo Barrio-Hernandez, Danish Memon, Claudia Hernandez-Armenta, Jiankun Lyu, Christopher J. P. Mathy, Tina Perica, Kala Bharath Pilla, Sai J. Ganesan, Daniel J. Saltzberg, Ramachandran Rakesh, Xi Liu, Sara B. Rosenthal, Lorenzo Calviello, Srivats Venkataramanan, Jose Liboy-Lugo, Yizhu Lin, Xi-Ping Huang, YongFeng Liu, Stephanie A. Wankowicz, Markus Bohn, Maliheh Safari, Fatima S. Ugur, Cassandra Koh, Nastaran Sadat Savar, Quang Dinh Tran, Djoshkun Shengjuler, Sabrina J. Fletcher, Michael C. O’Neal, Yiming Cai, Jason C. J. Chang, David J. Broadhurst, Saker Klippsten, Phillip P. Sharp, Nicole A. Wenzell, Duygu Kuzuoglu-Ozturk, Hao-Yuan Wang, Raphael Trenker, Janet M. Young, Devin A. Cavero, Joseph Hiatt, Theodore L. Roth, Ujjwal Rathore, Advait Subramanian, Julia Noack, Mathieu Hubert, Robert M. Stroud, Alan D. Frankel, Oren S. Rosenberg, Kliment A. Verba, David A. Agard, Melanie Ott, Michael Emerman, Natalia Jura, Mark von Zastrow, Eric Verdin, Alan Ashworth, Olivier Schwartz, Christophe d’Enfert, Shaeri Mukherjee, Matt Jacobson, Harmit S. Malik, Danica G. Fujimori, Trey Ideker, Charles S. Craik, Stephen N. Floor, James S. Fraser, John D. Gross, Andrej Sali, Bryan L. Roth, Davide Ruggero, Jack Taunton, Tanja Kortemme, Pedro Beltrao, Marco Vignuzzi, Adolfo García-Sastre, Kevan M. Shokat, Brian K. Shoichet, Nevan J. Krogan
Citation: Gordon, D.E. et al., 2020. A SARS-CoV-2 protein interaction map reveals targets for drug repurposing. Nature, 583(7816), pp.459-468.
Type: Journal-article
Authors: LaRinda A. Holland, Emily A. Kaelin, Rabia Maqsood, Bereket Estifanos, Lily I. Wu, Arvind Varsani, Rolf U. Halden, Brenda G. Hogue, Matthew Scotch, Efrem S. Lim
Citation: Holland, L.A. et al., 2020. An 81 base-pair deletion in SARS-CoV-2 ORF7a identified from sentinel surveillance in Arizona (Jan-Mar 2020).
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: J. Candanedo, C. Caleman, N. Tîmneanu, O. Beckstein, J. C. H. Spence
Citation: Candanedo, J. et al., 2020. Dynamics of rare gas solids irradiated by electron beams. The Journal of Chemical Physics, 152(14), p.144303.
Type: Journal-article
Authors: Elin Claesson, Weixiao Yuan Wahlgren, Heikki Takala, Suraj Pandey, Leticia Castillon, Valentyna Kuznetsova, Léocadie Henry, Matthijs Panman, Melissa Carrillo, Joachim Kübel, Rahul Nanekar, Linnéa Isaksson, Amke Nimmrich, Andrea Cellini, Dmitry Morozov, Michał Maj, Moona Kurttila, Robert Bosman, Eriko Nango, Rie Tanaka, Tomoyuki Tanaka, Luo Fangjia, So Iwata, Shigeki Owada, Keith Moffat, Gerrit Groenhof, Emina A. Stojković, Janne A. Ihalainen, Marius Schmidt, Sebastian Westenhoff
Citation: Claesson, E. et al., 2020. The primary structural photoresponse of phytochrome proteins captured by a femtosecond X-ray laser. eLife, 9.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: David P. Klebl, Diana C. F. Monteiro, Dimitrios Kontziampasis, Florian Kopf, Frank Sobott, Howard D. White, Martin Trebbin, Stephen P. Muench
Citation: Klebl, D.P. et al., 2020. Sample deposition onto cryo-EM grids: from sprays to jets and back. Acta Crystallographica Section D Structural Biology, 76(4), pp.340-349.
Type: Journal-article
Authors: Suvrajit Maji, Hstau Liao, Ali Dashti, Ghoncheh Mashayekhi, Abbas Ourmazd, Joachim Frank
Citation: Maji, S. et al., 2020. Propagation of Conformational Coordinates Across Angular Space in Mapping the Continuum of States from Cryo-EM Data by Manifold Embedding. Journal of Chemical Information and Modeling.
Type: Journal-article
Authors: Russell Fung, Jose Villar, Ali Dashti, Leila Cheikh Ismail, Eleonora Staines-Urias, Eric O. Ohuma, Laurent J. Salomon, Cesar G. Victora, Fernando C. Barros, Ann Lambert, Maria Carvalho, Yasmin A. Jaffer, Alison J. Noble, Michael G. Gravett, Manorama Purwar, Ruyan Pang, Enrico Bertino, Shama Munim, Aung Myat Min, Rose McGready, Shane A. Norris, Zulfiqar A Bhutta, Stephen H. Kennedy, Aris T. Papageorghiou, Abbas Ourmazd, International Fetal, Newborn Gro Group
Citation: Fung, R. et al., 2019. Using Machine Learning to Achieve Accurate Estimates of Fetal Gestational Age and Personalized Predictions of Fetal Growth. SSRN Electronic Journal.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: I. Poudyal, M. Schmidt, P. Schwander
Citation: Poudyal, I., Schmidt, M. & Schwander, P., 2020. Single-particle imaging by x-ray free-electron lasers--How many snapshots are needed? Structural Dynamics, 7(2), p.024102.
Type: Journal-article
Authors: James Zook, Mrinal Shekhar, Debra Hansen, Chelsie Conrad, Thomas Grant, Chitrak Gupta, Thomas White, Anton Barty, Shibom Basu, Yun Zhao, Nadia Zatsepin, Andrii Ishchenko, Alex Batyuk, Cornelius Gati, Chufeng Li, Lorenzo Galli, Jesse Coe, Mark Hunter, Meng Liang, Uwe Weierstall, Garret Nelson, Daniel James, Benjamin Stauch, Felicia Craciunescu, Darren Thifault, Wei Liu, Vadim Cherezov, Abhishek Singharoy, Petra Fromme
Citation: Zook, J. et al., 2020. XFEL and NMR Structures of Francisella Lipoprotein Reveal Conformational Space of Drug Target against Tularemia. Structure.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Darya Marchany-Rivera, Clyde A. Smith, Josiris D. Rodriguez-Perez, Juan López-Garriga
Citation: Marchany-Rivera, D. et al., 2020. Lucina pectinata oxyhemoglobin (II-III) heterodimer pH susceptibility. Journal of Inorganic Biochemistry, 207, p.111055.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Nilkanth Patel, Xi Ping Huang, Jessica M Grandner, Linda C Johansson, Benjamin Stauch, John D McCorvy, Yongfeng Liu, Bryan Roth, Vsevolod Katritch
Citation: Patel, N. et al., 2020. Structure-based discovery of potent and selective melatonin receptor agonists. eLife, 9.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Alexander M. Wolff, Iris D. Young, Raymond G. Sierra, Aaron S. Brewster, Michael W. Martynowycz, Eriko Nango, Michihiro Sugahara, Takanori Nakane, Kazutaka Ito, Andrew Aquila, Asmit Bhowmick, Justin T. Biel, Sergio Carbajo, Aina E. Cohen, Saul Cortez, Ana Gonzalez, Tomoya Hino, Dohyun Im, Jake D. Koralek, Minoru Kubo, Tomas S. Lazarou, Takashi Nomura, Shigeki Owada, Avi J. Samelson, Tomoyuki Tanaka, Rie Tanaka, Erin M. Thompson, Henry van den Bedem, Rahel A. Woldeyes, Fumiaki Yumoto, Wei Zhao, Kensuke Tono, Sebastien Boutet, So Iwata, Tamir Gonen, Nicholas K. Sauter, James S. Fraser, Michael C. Thompson
Citation: Wolff, A.M. et al., 2020. Comparing serial X-ray crystallography and microcrystal electron diffraction (MicroED) as methods for routine structure determination from small macromolecular crystals. IUCrJ, 7(2), pp.306-323.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Tyler D. Huber, Jonathan A. Clinger, Yang Liu, Weijun Xu, Mitchell D. Miller, George N. Phillips, Jon S. Thorson
Citation: Huber, T.D. et al., 2020. Methionine Adenosyltransferase Engineering to Enable Bioorthogonal Platforms for AdoMet-Utilizing Enzymes. ACS Chemical Biology, 15(3), pp.695-705.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: John C. H. Spence
Citation: Spence, J.C.H., 2020. Serial Crystallography: Preface. Crystals, 10(2), p.135.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Marius Schmidt
Citation: Schmidt, M., 2020. Reaction Initiation in Enzyme Crystals by Diffusion of Substrate. Crystals, 10(2), p.116.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Reed M. Stein, Hye Jin Kang, John D. McCorvy, Grant C. Glatfelter, Anthony J. Jones, Tao Che, Samuel Slocum, Xi-Ping Huang, Olena Savych, Yurii S. Moroz, Benjamin Stauch, Linda C. Johansson, Vadim Cherezov, Terry Kenakin, John J. Irwin, Brian K. Shoichet, Bryan L. Roth, Margarita L. Dubocovich
Citation: Stein, R.M. et al., 2020. Virtual discovery of melatonin receptor ligands to modulate circadian rhythms. Nature.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Ian J. Campbell, Jose L. Olmos, Weijun Xu, Dimithree Kahanda, Joshua T. Atkinson, Othneil N. Sparks, Mitchell D. Miller, George N. Phillips, George N. Bennett, Jonathan J. Silberg
Citation: Campbell, I.J. et al., 2020. Prochlorococcusphage ferredoxin: structural characterization and electron transfer to cyanobacterial sulfite reductases.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Yen-Lin Chen, Lois Pollack
Citation: Chen, Y.-L. & Pollack, L., 2020. Convolutional Neural Networks Bridge Molecular Models and Solution X-ray Scattering Experiments. Biophysical Journal, 118(3), p.301a.
Type: Poster
Authors: Leslie A. Salas-Estrada, Thomas D. Grant, Suchithranga M. Perera, Andrey V. Struts, Udeep Chawla, Xiaolin Xu, Steven D. Fried, Nipuna Weerasinghe, D. Mendez, R. Alvarez, K. Karpos, S. Lisova, S. Zaare, R. Nazari, N.A. Zatsepsin, Abhishek Singharoy, S. Boutet, S. Carbajo, M.S. Hunter, M. Liang, M.D. Seaberg, Raimund Fromme, Petra Fromme, Richard A. Kirian, Michael F. Brown, Alan Grossfield
Citation: Salas-Estrada, L.A. et al., 2020. Rhodopsin's Ultra-Fast Activation Dynamics in Bilayer and Micelle Environments. Biophysical Journal, 118(3), p.92a.
Type: Journal-article
Authors: Alex Plumridge, Lois Pollack
Citation: Plumridge, A. & Pollack, L., 2020. Discovering Design Principles to Re-Engineer Functional RNA Elements. Biophysical Journal, 118(3), p.70a.
Type: Poster
Authors: Derrick R. Lin, Suzette A. Pabit, Lois Pollack
Citation: Lin, D.R., Pabit, S.A. & Pollack, L., 2020. Probing Mg2+-Mediated RNA-RNA Interactions in the Presence of Metabolites. Biophysical Journal, 118(3), p.69a.
Type: Poster
Authors: Yen-Lin Chen, Lois Pollack
Citation: Chen, Y.-L. & Pollack, L., 2020. Quantitative Analysis of Salt-Induced RNA Duplex Variations by Wide-Angle X-ray Scattering (WAXS). Biophysical Journal, 118(3), p.68a.
Type: Poster
Authors: Alex Mauney, Lois Pollack
Citation: Mauney, A. & Pollack, L., 2020. DNA Sequence and Histone Core Composition Determine the Unwrapping Pathways in Nucleosomes. Biophysical Journal, 118(3), p.489a.
Type: Poster
Authors: Thomas D. Grant, Suchithranga M. Perera, Leslie A. Salas-Estrada, Andrey V. Struts, Udeep Chawla, Xiaolin Xu, Steven D. Fried, Nipuna Weerasinghe, D. Mendez, R. Alvarez, K. Karpos, S. Lisova, S. Zaare, R. Nazari, N.A. Zatsepsin, Abhishek Singharoy, S. Boutet, S. Carbajo, M.S. Hunter, M. Liang, M.D. Seaberg, Raimund Fromme, Petra Fromme, Alan Grossfield, Richard A. Kirian, Michael F. Brown
Citation: Grant, T.D. et al., 2020. Membrane Protein Dynamics Revealed by X-Ray Scattering with a Femtosecond Free-Electron Laser. Biophysical Journal, 118(3), p.365a.
Type: Journal-article
Authors: Josue San Emeterio, Lois Pollack
Citation: Emeterio, J. S., & Pollack, L. (2020). Viral RNA Folding Studied through Contrast Variation Small Angle- X Ray Scattering. Biophysical Journal, 118(3), 222a. https://doi.org/10.1016/j.bpj.2019.11.1319
Type: Journal-article
Authors: Suzette A. Pabit, Yen-Lin Chen, Grace A. Usher, Erik C. Cook, Lois Pollack, Scott A. Showalter
Citation: Pabit, S.A. et al., 2020. Evidence that Primary Microrna Bends in the Presence of DGCR8 Seen using Both Saxs and FRET Measurements. Biophysical Journal, 118(3), p.222a.
Type: Poster
Authors: Hasan DeMirci, Bradley B. Tolar, Tzanko Doukov, Aldis Petriceks, Akshaye Pal, Yasuo Yoshikuni, Aharon Gomez, David A. Saez, Esteban Vöhringer-Martinez, Thomas Schwander, Tobias J. Erb, Christopher A. Francis, Soichi Wakatsuki
Citation: DeMirci, H. et al., 2020. Structural adaptation of oxygen tolerance in 4-hydroxybutyrl-CoA dehydratase, a key enzyme of archaeal carbon fixation.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: José A. Carmona‐Negrón, José M. Liboy‐Lugo, Alberto Santana, Enrique Meléndez
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Timothy R. Stachowski, Mary E. Snell, Edward H. Snell
Citation: Stachowski, T.R., Snell, M.E. & Snell, E.H., 2020. Structural insights into conformational switching in latency-associated peptide between transforming growth factor β-1 bound and unbound states. IUCrJ, 7(2), pp.238-252.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Premila P. Samuel, Mark A. White, William C. Ou, David A. Case, George N. Phillips, John S. Olson
Citation: Samuel, P.P. et al., 2020. The Interplay between Molten Globules and Heme Disassociation Defines Human Hemoglobin Disassembly. Biophysical Journal, 118(6), pp.1381-1400.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Karol Nass, Lars Redecke, M. Perbandt, O. Yefanov, M. Klinge, R. Koopmann, F. Stellato, A. Gabdulkhakov, R. Schönherr, D. Rehders, J. M. Lahey-Rudolph, A. Aquila, A. Barty, S. Basu, R. B. Doak, R. Duden, M. Frank, R. Fromme, S. Kassemeyer, G. Katona, R. Kirian, H. Liu, I. Majoul, J. M. Martin-Garcia, M. Messerschmidt, R. L. Shoeman, U. Weierstall, S. Westenhoff, T. A. White, G. J. Williams, C. H. Yoon, N. Zatsepin, P. Fromme, M. Duszenko, H. N. Chapman, C. Betzel
Citation: Nass, K. et al., 2020. In cellulo crystallization of Trypanosoma brucei IMP dehydrogenase enables the identification of genuine co-factors. Nature Communications, 11(1).
Type: Journal-article
Authors: Hongnan Cao, Jonathan D. Walton, Phillip Brumm, George N. Phillips
Citation: Cao, H. et al., 2020. Crystal Structure of α-Xylosidase from Aspergillus niger in Complex with a Hydrolyzed Xyloglucan Product and New Insights in Accurately Predicting Substrate Specificities of GH31 Family Glycosidases. ACS Sustainable Chemistry & Engineering, 8(6), pp.2540-2547.
Type: Journal-article
Authors: Diana C. F. Monteiro, David von Stetten, Claudia Stohrer, Marta Sans, Arwen R. Pearson, Gianluca Santoni, Peter van der Linden, Martin Trebbin
Citation: Monteiro, D.C.F. et al., 2020. 3D-MiXD: 3D-printed X-ray-compatible microfluidic devices for rapid, low-consumption serial synchrotron crystallography data collection in flow. IUCrJ, 7(2), pp.207-219.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Vanja Stojković, Alexander G Myasnikov, Iris D Young, Adam Frost, James S Fraser, Danica Galonić Fujimori
Citation: Stojković, V. et al., 2020. Assessment of the nucleotide modifications in the high-resolution cryo-electron microscopy structure of the Escherichia coli 50S subunit. Nucleic Acids Research.
Type: Journal-article
Authors: Sweta Vangaveti, William A. Cantara, Jessica L. Spears, Hasan DeMirci, Frank V. Murphy, Sri V. Ranganathan, Kathryn L. Sarachan, Paul F. Agris
Citation: Vangaveti, S. et al., 2020. A Structural Basis for Restricted Codon Recognition Mediated by 2-thiocytidine in tRNA Containing a Wobble Position Inosine. Journal of Molecular Biology, 432(4), pp.913-929.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Benjamin A. Barad, Lin Liu, Roberto E. Diaz, Ralp Basilio, Steven J. Van Dyken, Richard M. Locksley, James S. Fraser
Citation: Barad, B.A. et al., 2020. Differences in the chitinolytic activity of mammalian chitinases on soluble and insoluble substrates. Protein Science.
Type: Journal-article
Authors: Edward H. Snell, Helena Taberman, Charles S. Bury, Mark J. van der Woerd, Elspeth F. Garman
Citation: Snell, E.H. et al., 1999. Structural knowledge or X-ray damage? Dose-dependent case studies on xylose isomerase revealing structural perturbations. Acta Crystallographica Section A Foundations and Advances, 75(a1), pp.a232-a232.
Type: Poster
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Robb Welty, Michael Rau, Suzette Pabit, Mark S. Dunstan, Graeme L. Conn, Lois Pollack, Kathleen B. Hall
Citation: Welty, R. et al., 2019. Ribosomal protein L11 selectively stabilizes a tertiary structure of the GTPase Center rRNA domain. Journal of Molecular Biology.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: E. Sethe Burgie, Jonathan A. Clinger, Mitchell D. Miller, Aaron S. Brewster, Pierre Aller, Agata Butryn, Franklin D. Fuller, Sheraz Gul, Iris D. Young, Cindy C. Pham, In-Sik Kim, Asmit Bhowmick, Lee J. O’Riordan, Kyle D. Sutherlin, Joshua V. Heinemann, Alexander Batyuk, Roberto Alonso-Mori, Mark S. Hunter, Jason E. Koglin, Junko Yano, Vittal K. Yachandra, Nicholas K. Sauter, Aina E. Cohen, Jan Kern, Allen M. Orville, George N. Phillips, Richard D. Vierstra
Citation: Burgie, E.S. et al., 2019. Photoreversible interconversion of a phytochrome photosensory module in the crystalline state. Proceedings of the National Academy of Sciences, 117(1), pp.300-307.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: David C. Wych, James S. Fraser, David L. Mobley, Michael E. Wall
Citation: Wych, D.C. et al., 2019. Liquid-like and rigid-body motions in molecular-dynamics simulations of a crystalline protein. Structural Dynamics, 6(6), p.064704.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Kartik Ayyer, Andrew J. Morgan, Andrew Aquila, Hasan DeMirci, Brenda G. Hogue, Richard A. Kirian, P. Lourdu Xavier, Chun Hong Yoon, Henry N. Chapman, Anton Barty
Citation: Ayyer, K. et al., 2019. Low-signal limit of X-ray single particle diffractive imaging. Optics Express, 27(26), p.37816.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Anastasiia Gusach, Aleksandra Luginina, Egor Marin, Rebecca L. Brouillette, Élie Besserer-Offroy, Jean-Michel Longpré, Andrii Ishchenko, Petr Popov, Nilkanth Patel, Taku Fujimoto, Toru Maruyama, Benjamin Stauch, Margarita Ergasheva, Daria Romanovskaia, Anastasiia Stepko, Kirill Kovalev, Mikhail Shevtsov, Valentin Gordeliy, Gye Won Han, Vsevolod Katritch, Valentin Borshchevskiy, Philippe Sarret, Alexey Mishin, Vadim Cherezov
Citation: Gusach, A. et al., 2019. Structural basis of ligand selectivity and disease mutations in cysteinyl leukotriene receptors. Nature Communications, 10(1).
Type: Journal-article
Authors: Alex Plumridge, Kurt Andresen, Lois Pollack
Citation: Plumridge, A., Andresen, K. & Pollack, L., 2019. Visualizing Disordered Single-Stranded RNA: Connecting Sequence, Structure, and Electrostatics. Journal of the American Chemical Society.
Type: Journal-article
Authors: Geoffrey W. Grime, Oliver B. Zeldin, Mary E. Snell, Edward D. Lowe, John F. Hunt, Gaetano T. Montelione, Liang Tong, Edward H. Snell, Elspeth F. Garman
Citation: Grime, G.W. et al., 2019. High-Throughput PIXE as an Essential Quantitative Assay for Accurate Metalloprotein Structural Analysis: Development and Application. Journal of the American Chemical Society.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Tobias Claff, Jing Yu, Véronique Blais, Nilkanth Patel, Charlotte Martin, Lijie Wu, Gye Won Han, Brian J. Holleran, Olivier Van der Poorten, Kate L. White, Michael A. Hanson, Philippe Sarret, Louis Gendron, Vadim Cherezov, Vsevolod Katritch, Steven Ballet, Zhi-Jie Liu, Christa E. Müller, Raymond C. Stevens
Citation: Claff, T. et al., 2019. Elucidating the active δ-opioid receptor crystal structure with peptide and small-molecule agonists. Science Advances, 5(11), p.eaax9115.
Type: Journal-article
Authors: Anum A. Glasgow, Yao-Ming Huang, Daniel J. Mandell, Michael Thompson, Ryan Ritterson, Amanda L. Loshbaugh, Jenna Pellegrino, Cody Krivacic, Roland A. Pache, Kyle A. Barlow, Noah Ollikainen, Deborah Jeon, Mark J. S. Kelly, James S. Fraser, Tanja Kortemme
Citation: Glasgow, A.A. et al., 2019. Computational design of a modular protein sense-response system. Science, 366(6468), pp.1024-1028.
Type: Journal-article
Authors: M. L. Shelby, D. Gilbile, T. D. Grant, C. Seuring, B. W. Segelke, W. He, A. C. Evans, T. Pakendorf, P. Fischer, M. S. Hunter, A. Batyuk, M. Barthelmess, A. Meents, M. A. Coleman, T. L. Kuhl, M. Frank
Citation: Shelby, M.L. et al., 2020. A fixed-target platform for serial femtosecond crystallography in a hydrated environment. IUCrJ, 7(1), pp.30-41.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Suraj Pandey, Richard Bean, Tokushi Sato, Ishwor Poudyal, Johan Bielecki, Jorvani Cruz Villarreal, Oleksandr Yefanov, Valerio Mariani, Thomas A. White, Christopher Kupitz, Mark Hunter, Mohamed H. Abdellatif, Saša Bajt, Valerii Bondar, Austin Echelmeier, Diandra Doppler, Moritz Emons, Matthias Frank, Raimund Fromme, Yaroslav Gevorkov, Gabriele Giovanetti, Man Jiang, Daihyun Kim, Yoonhee Kim, Henry Kirkwood, Anna Klimovskaia, Juraj Knoska, Faisal H. M. Koua, Romain Letrun, Stella Lisova, Luis Maia, Victoria Mazalova, Domingo Meza, Thomas Michelat, Abbas Ourmazd, Guido Palmer, Marco Ramilli, Robin Schubert, Peter Schwander, Alessandro Silenzi, Jolanta Sztuk-Dambietz, Alexandra Tolstikova, Henry N. Chapman, Alexandra Ros, Anton Barty, Petra Fromme, Adrian P. Mancuso, Marius Schmidt
Citation: Pandey, S. et al., 2019. Time-resolved serial femtosecond crystallography at the European XFEL. Nature Methods.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Benjamin Stauch, Linda C. Johansson, Vadim Cherezov
Citation: Stauch, B., Johansson, L.C. & Cherezov, V., 2019. Structural Insights into Melatonin Receptors. The FEBS Journal.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Chris Gisriel, Jesse Coe, Romain Letrun, Oleksandr M. Yefanov, Cesar Luna-Chavez, Natasha E. Stander, Stella Lisova, Valerio Mariani, Manuela Kuhn, Steve Aplin, Thomas D. Grant, Katerina Dörner, Tokushi Sato, Austin Echelmeier, Jorvani Cruz Villarreal, Mark S. Hunter, Max O. Wiedorn, Juraj Knoska, Victoria Mazalova, Shatabdi Roy-Chowdhury, Jay-How Yang, Alex Jones, Richard Bean, Johan Bielecki, Yoonhee Kim, Grant Mills, Britta Weinhausen, Jose D. Meza, Nasser Al-Qudami, Saša Bajt, Gerrit Brehm, Sabine Botha, Djelloul Boukhelef, Sandor Brockhauser, Barry D. Bruce, Matthew A. Coleman, Cyril Danilevski, Erin Discianno, Zachary Dobson, Hans Fangohr, Jose M. Martin-Garcia, Yaroslav Gevorkov, Steffen Hauf, Ahmad Hosseinizadeh, Friederike Januschek, Gihan K. Ketawala, Christopher Kupitz, Luis Maia, Maurizio Manetti, Marc Messerschmidt, Thomas Michelat, Jyotirmoy Mondal, Abbas Ourmazd, Gianpietro Previtali, Iosifina Sarrou, Silvan Schön, Peter Schwander, Megan L. Shelby, Alessandro Silenzi, Jolanta Sztuk-Dambietz, Janusz Szuba, Monica Turcato, Thomas A. White, Krzysztof Wrona, Chen Xu, Mohamed H. Abdellatif, James D. Zook, John C. H. Spence, Henry N. Chapman, Anton Barty, Richard A. Kirian, Matthias Frank, Alexandra Ros, Marius Schmidt, Raimund Fromme, Adrian P. Mancuso, Petra Fromme, Nadia A. Zatsepin
Citation: Gisriel, C. et al., 2019. Membrane protein megahertz crystallography at the European XFEL. Nature Communications, 10(1).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Andrii Ishchenko, Benjamin Stauch, Gye Won Han, Alexander Batyuk, Anna Shiriaeva, Chufeng Li, Nadia Zatsepin, Uwe Weierstall, Wei Liu, Eriko Nango, Takanori Nakane, Rie Tanaka, Kensuke Tono, Yasumasa Joti, So Iwata, Isabel Moraes, Cornelius Gati, Vadim Cherezov
Citation: Ishchenko, A. et al., 2019. Toward G protein-coupled receptor structure-based drug design using X-ray lasers. IUCrJ, 6(6), pp.1106-1119.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Yen-Lin Chen, Lois Pollack
Citation: Chen, Y.-L. & Pollack, L., 2019. Salt Dependence of A-Form RNA Duplexes: Structures and Implications. The Journal of Physical Chemistry B.
Type: Journal-article
Authors: Dimitrios Giannakis, Abbas Ourmazd, Joanna Slawinska, Zhizhen Zhao
Citation: Giannakis, D. et al., 2019. Correction to: Spatiotemporal Pattern Extraction by Spectral Analysis of Vector-Valued Observables. Journal of Nonlinear Science.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Aleksandra Luginina, Anastasiia Gusach, Egor Marin, Alexey Mishin, Rebecca Brouillette, Petr Popov, Anna Shiriaeva, Élie Besserer-Offroy, Jean-Michel Longpré, Elizaveta Lyapina, Andrii Ishchenko, Nilkanth Patel, Vitaly Polovinkin, Nadezhda Safronova, Andrey Bogorodskiy, Evelina Edelweiss, Hao Hu, Uwe Weierstall, Wei Liu, Alexander Batyuk, Valentin Gordeliy, Gye Won Han, Philippe Sarret, Vsevolod Katritch, Valentin Borshchevskiy, Vadim Cherezov
Citation: Luginina, A. et al., 2019. Structure-based mechanism of cysteinyl leukotriene receptor inhibition by antiasthmatic drugs. Science Advances, 5(10), p.eaax2518.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Julia K. Rotow, Philippe Gui, Wei Wu, Victoria M. Raymond, Richard B. Lanman, Frederic J. Kaye, Nir Peled, Ferran Fece de la Cruz, Brandon Nadres, Ryan B. Corcoran, Iwei Yeh, Boris C. Bastian, Petr Starostik, Kimberly Newsom, Victor R. Olivas, Alexander M. Wolff, James S. Fraser, Eric A. Collisson, Caroline E. McCoach, D. Ross Camidge, Jose Pacheco, Lyudmila Bazhenova, Tianhong Li, Trever G. Bivona, Collin M. Blakely
Citation: Rotow, J.K. et al., 2019. Co-occurring Alterations in the RAS-MAPK Pathway Limit Response to MET Inhibitor Treatment in MET Exon 14 Skipping Mutation-Positive Lung Cancer. Clinical Cancer Research, 26(2), pp.439-449.
Type: Journal-article
Authors: Michael C. Thompson, Benjamin A. Barad, Alexander M. Wolff, Hyun Sun Cho, Friedrich Schotte, Daniel M. C. Schwarz, Philip Anfinrud, James S. Fraser
Citation: Thompson, M.C. et al., 2019. Temperature-jump solution X-ray scattering reveals distinct motions in a dynamic enzyme. Nature Chemistry, 11(11), pp.1058-1066.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Austin Echelmeier, Daihyun Kim, Jorvani Cruz Villarreal, Jesse Coe, Sebastian Quintana, Gerrit Brehm, Ana Egatz-Gomez, Reza Nazari, Raymond G. Sierra, Jason E. Koglin, Alexander Batyuk, Mark S. Hunter, Sébastien Boutet, Nadia Zatsepin, Richard A. Kirian, Thomas D. Grant, Petra Fromme, Alexandra Ros
Citation: Echelmeier, A. et al., 2019. 3D printed droplet generation devices for serial femtosecond crystallography enabled by surface coating. Journal of Applied Crystallography, 52(5), pp.997-1008.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: J. P. J. Chen, K. E. Schmidt, R. A. Kirian, J. J. Donatelli
Citation: Chen, J.P.J. et al., 2019. Reconstruction of Objects from Their Averaged Finite Crystal Diffraction Intensity. 2019 IEEE International Conference on Image Processing (ICIP).
Type: Proceedings-article
Authors: Persis Drell, Dawn A. Bonnell, Jingguang Chen, Sue Clark, Beatriz Roldan Cuenya, Helmut Dosch, Cynthia Friend, Yan Gao, Sharon Hammes-Schiffer, Marc Kastner, Bruce Kay, Stephen R. Leone, Despina Louca, Monica Olvera de la Cruz, Abbas Ourmazd, Philippe Piot, Ian Robertson, Anthony Rollett, Frances Ross, Gary Rubloff, Maria Santore, Esther S. Takeuchi, John Tranquada, Stephen Wasserman
Citation: Drell, P. et al., 2018. A Remarkable Return On Investment In Fundamental Research: 40 Years of Basic Energy Sciences at the Department of Energy.
Type: Report
Authors: Daihyun Kim, Austin Echelmeier, Jorvani Cruz Villarreal, Sahir Gandhi, Sebastian Quintana, Ana Egatz-Gomez, Alexandra Ros
Citation: Kim, D. et al., 2019. Electric Triggering for Enhanced Control of Droplet Generation. Analytical Chemistry, 91(15), pp.9792-9799.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Austin Echelmeier, Mukul Sonker, Alexandra Ros
Citation: Echelmeier, A., Sonker, M. & Ros, A., 2019. Microfluidic sample delivery for serial crystallography using XFELs. Analytical and Bioanalytical Chemistry, 411(25), pp.6535-6547.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Gabriele M. M. Stoffel, David Adrian Saez, Hasan DeMirci, Bastian Vögeli, Yashas Rao, Jan Zarzycki, Yasuo Yoshikuni, Soichi Wakatsuki, Esteban Vöhringer-Martinez, Tobias J. Erb
Citation: Stoffel, G.M.M. et al., 2019. Four amino acids define the CO2binding pocket of enoyl-CoA carboxylases/reductases. Proceedings of the National Academy of Sciences, 116(28), pp.13964-13969.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Helena Taberman, Charles S. Bury, Mark J. van der Woerd, Edward H. Snell, Elspeth F. Garman
Citation: Taberman, H. et al., 2019. Structural knowledge or X-ray damage? A case study on xylose isomerase illustrating both. Journal of Synchrotron Radiation, 26(4), pp.931-944.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Gisela Brändén, Greger Hammarin, Rajiv Harimoorthy, Alexander Johansson, David Arnlund, Erik Malmerberg, Anton Barty, Stefan Tångefjord, Peter Berntsen, Daniel P. DePonte, Carolin Seuring, Thomas A. White, Francesco Stellato, Richard Bean, Kenneth R. Beyerlein, Leonard M. G. Chavas, Holger Fleckenstein, Cornelius Gati, Umesh Ghoshdastider, Lars Gumprecht, Dominik Oberthür, David Popp, Marvin Seibert, Thomas Tilp, Marc Messerschmidt, Garth J. Williams, N. Duane Loh, Henry N. Chapman, Peter Zwart, Mengning Liang, Sébastien Boutet, Robert C. Robinson, Richard Neutze
Citation: Brändén, G. et al., 2019. Coherent diffractive imaging of microtubules using an X-ray laser. Nature Communications, 10(1).
Type: Journal-article
Authors: Masoud Mehrjoo, Elke Plönjes, Barbara Keitel, Marion Kuhlmann, Mabel Ruiz-Lopez, Thomas Wodzinski, Klaus Giewekemeyer, Patrik Vagovic, Yoonhee Kim, Mohammadreza Banjafar, Marc Messerschmidt, Tomáš Burian
Citation: Mehrjoo, M. et al., 2019. Spatial characterization of FLASH2 pulses: current status and future plan (Conference Presentation) T. Tschentscher et al., eds. X-Ray Free-Electron Lasers: Advances in Source Development and Instrumentation V.
Type: Proceedings-article
Authors: Dimitrios Giannakis, Abbas Ourmazd, Joanna Slawinska, Zhizhen Zhao
Citation: Giannakis, D. et al., 2019. Spatiotemporal Pattern Extraction by Spectral Analysis of Vector-Valued Observables. Journal of Nonlinear Science.
Type: Journal-article
Authors: J Bayani, C Poncet, CQ Yao, C Crozier, N Anouk, T Piper, C Cunningham, M Sobol, S Aebi, K Benstead, O Bogler, L Dal Lago, J Fraser, FH Hilbers, I Hedenfalk, L Korde, B Linderholm, J Martens, L Middleton, M Murray, C Kelly, C Nilsson, M Nowaczyk, S Peeters, A Peric, P Porter, C Schröder, IT Rubio, KJ Ruddy, C van Asperen, D Van Den Weyngaert, C van Deurzen, E van Leeuwen-Stok, J Vermeij, E Winer, PC Boutros, SH Giordano, F Cardoso, JM Bartlett
Citation: Bayani, J. et al., 2019. Abstract P6-19-01: Evaluation of multiple transcriptomic gene risk signatures in male breast cancer. Poster Session Abstracts.
Type: Proceedings-article
Authors: George D. Calvey, Andrea M. Katz, Lois Pollack
Citation: Calvey, G.D., Katz, A.M. & Pollack, L., 2019. Microfluidic Mixing Injector Holder Enables Routine Structural Enzymology Measurements with Mix-and-Inject Serial Crystallography Using X-ray Free Electron Lasers. Analytical Chemistry.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Benjamin Stauch, Linda C. Johansson, John D. McCorvy, Nilkanth Patel, Gye Won Han, Xi-Ping Huang, Cornelius Gati, Alexander Batyuk, Samuel T. Slocum, Andrii Ishchenko, Wolfgang Brehm, Thomas A. White, Nairie Michaelian, Caleb Madsen, Lan Zhu, Thomas D. Grant, Jessica M. Grandner, Anna Shiriaeva, Reid H. J. Olsen, Alexandra R. Tribo, Saïd Yous, Raymond C. Stevens, Uwe Weierstall, Vsevolod Katritch, Bryan L. Roth, Wei Liu, Vadim Cherezov
Citation: Stauch, B. et al., 2019. Publisher Correction: Structural basis of ligand recognition at the human MT1 melatonin receptor. Nature, 569(7756), pp.E6-E6.
Type: Journal-article
Authors: M. Gertrude Gutierrez, Jacob Deyell, Kate L. White, Lucia C. Dalle Ore, Vadim Cherezov, Raymond C. Stevens, Noah Malmstadt
Citation: Gutierrez, M.G. et al., 2019. The lipid phase preference of the adenosine A2A receptor depends on its ligand binding state. Chemical Communications, 55(40), pp.5724-5727.
Type: Journal-article
Authors: Benjamin Stauch, Linda C. Johansson, John D. McCorvy, Nilkanth Patel, Gye Won Han, Xi-Ping Huang, Cornelius Gati, Alexander Batyuk, Samuel T. Slocum, Andrii Ishchenko, Wolfgang Brehm, Thomas A. White, Nairie Michaelian, Caleb Madsen, Lan Zhu, Thomas D. Grant, Jessica M. Grandner, Anna Shiriaeva, Reid H. J. Olsen, Alexandra R. Tribo, Saïd Yous, Raymond C. Stevens, Uwe Weierstall, Vsevolod Katritch, Bryan L. Roth, Wei Liu, Vadim Cherezov
Citation: Stauch, B. et al., 2019. Structural basis of ligand recognition at the human MT1 melatonin receptor. Nature.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Linda C. Johansson, Benjamin Stauch, John D. McCorvy, Gye Won Han, Nilkanth Patel, Xi-Ping Huang, Alexander Batyuk, Cornelius Gati, Samuel T. Slocum, Chufeng Li, Jessica M. Grandner, Shuming Hao, Reid H. J. Olsen, Alexandra R. Tribo, Sahba Zaare, Lan Zhu, Nadia A. Zatsepin, Uwe Weierstall, Saïd Yous, Raymond C. Stevens, Wei Liu, Bryan L. Roth, Vsevolod Katritch, Vadim Cherezov
Citation: Johansson, L.C. et al., 2019. XFEL structures of the human MT2 melatonin receptor reveal the basis of subtype selectivity. Nature.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Adrian P. Mancuso, Andrew Aquila, Lewis Batchelor, Richard J. Bean, Johan Bielecki, Gannon Borchers, Katerina Doerner, Klaus Giewekemeyer, Rita Graceffa, Oliver D. Kelsey, Yoonhee Kim, Henry J. Kirkwood, Alexis Legrand, Romain Letrun, Bradley Manning, Luis Lopez Morillo, Marc Messerschmidt, Grant Mills, Steffen Raabe, Nadja Reimers, Adam Round, Tokushi Sato, Joachim Schulz, Cedric Signe Takem, Marcin Sikorski, Stephan Stern, Prasad Thute, Patrik Vagovič, Britta Weinhausen, Thomas Tschentscher
Citation: Mancuso, A.P. et al., 2019. The Single Particles, Clusters and Biomolecules and Serial Femtosecond Crystallography instrument of the European XFEL: initial installation. Journal of Synchrotron Radiation, 26(3), pp.660-676.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jose M. Martin-Garcia, Lan Zhu, Derek Mendez, Ming-Yue Lee, Eugene Chun, Chufeng Li, Hao Hu, Ganesh Subramanian, David Kissick, Craig Ogata, Robert Henning, Andrii Ishchenko, Zachary Dobson, Shangji Zhang, Uwe Weierstall, John C. H. Spence, Petra Fromme, Nadia A. Zatsepin, Robert F. Fischetti, Vadim Cherezov, Wei Liu
Citation: Martin-Garcia, J.M. et al., 2019. High-viscosity injector-based pink-beam serial crystallography of microcrystals at a synchrotron radiation source. IUCrJ, 6(3), pp.412-425.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Halil I Ciftci, Raymond G Sierra, Chun Yoon, Zhen Su, Hiroshi Tateishi, Ryoko Koga, Koiwai Kotaro, Fumiaki Yumoto, Toshiya Senda, Mengling Liang, Soichi Wakatsuki, Masami Otsuka, Mikako Fujita, Hasan DeMirci
Citation: I Ciftci, H. et al., 2019. Serial Femtosecond X-Ray Diffraction of HIV-1 Gag MA-IP6 Microcrystals at Ambient Temperature. International Journal of Molecular Sciences, 20(7), p.1675.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Alexey V. Onufriev, David A. Case
Citation: Onufriev, A.V. & Case, D.A., 2019. Generalized Born Implicit Solvent Models for Biomolecules. Annual Review of Biophysics, 48(1), pp.275-296.
Type: Journal-article
Authors: Katherine A. Niessen, Mengyang Xu, Deepu K. George, Michael C. Chen, Adrian R. Ferré-D’Amaré, Edward H. Snell, Vivian Cody, James Pace, Marius Schmidt, Andrea G. Markelz
Citation: Niessen, K.A. et al., 2019. Protein and RNA dynamical fingerprinting. Nature Communications, 10(1).
Type: Journal-article
Authors: Yingchen Shi, Ke Yin, Xuecheng Tai, Hasan DeMirci, Ahmad Hosseinizadeh, Brenda G. Hogue, Haoyuan Li, Abbas Ourmazd, Peter Schwander, Ivan A. Vartanyants, Chun Hong Yoon, Andrew Aquila, Haiguang Liu
Citation: Shi, Y. et al., 2019. Evaluation of the performance of classification algorithms for XFEL single-particle imaging data.
Type: Component
Authors: Yingchen Shi, Ke Yin, Xuecheng Tai, Hasan DeMirci, Ahmad Hosseinizadeh, Brenda G. Hogue, Haoyuan Li, Abbas Ourmazd, Peter Schwander, Ivan A. Vartanyants, Chun Hong Yoon, Andrew Aquila, Haiguang Liu
Citation: Shi, Y. et al., 2019. Evaluation of the performance of classification algorithms for XFEL single-particle imaging data. IUCrJ, 6(2), pp.331-340.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Yingchen Shi, Ke Yin, Xuecheng Tai, Hasan DeMirci, Ahmad Hosseinizadeh, Brenda G. Hogue, Haoyuan Li, Abbas Ourmazd, Peter Schwander, Ivan A. Vartanyants, Chun Hong Yoon, Andrew Aquila, Haiguang Liu
Citation: Shi, Y. et al., 2019. Evaluation of the performance of classification algorithms for XFEL single-particle imaging data.
Type: Component
Authors: J. P. J. Chen, J. J. Donatelli, K. E. Schmidt, R. A. Kirian
Citation: Chen, J.P.J. et al., 2019. Shape transform phasing of edgy nanocrystals. Acta Crystallographica Section A Foundations and Advances, 75(2), pp.239-259.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Raymond G. Sierra, Alexander Batyuk, Zhibin Sun, Andrew Aquila, Mark S. Hunter, Thomas J. Lane, Mengning Liang, Chun Hong Yoon, Roberto Alonso-Mori, Rebecca Armenta, Jean-Charles Castagna, Michael Hollenbeck, Ted O. Osier, Matt Hayes, Jeff Aldrich, Robin Curtis, Jason E. Koglin, Theodore Rendahl, Evan Rodriguez, Sergio Carbajo, Serge Guillet, Rob Paul, Philip Hart, Kazutaka Nakahara, Gabriella Carini, Hasan DeMirci, E. Han Dao, Brandon M. Hayes, Yashas P. Rao, Matthieu Chollet, Yiping Feng, Franklin D. Fuller, Christopher Kupitz, Takahiro Sato, Matthew H. Seaberg, Sanghoon Song, Tim B. van Driel, Hasan Yavas, Diling Zhu, Aina E. Cohen, Soichi Wakatsuki, Sébastien Boutet
Citation: Sierra, R.G. et al., 2019. The Macromolecular Femtosecond Crystallography Instrument at the Linac Coherent Light Source. Journal of Synchrotron Radiation, 26(2), pp.346-357.
Type: Journal-article
Authors: Alex Plumridge, Lois Pollack
Citation: Plumridge, A. & Pollack, L., 2019. Following Folding Pathways of Common Riboswitch Motifs with Time-Resolved Single-Molecule FRET. Biophysical Journal, 116(3), p.355a.
Type: Poster
Authors: Suzette A. Pabit, Andrea M. Katz, George D. Calvey, Lois Pollack
Citation: Pabit, S.A. et al., 2019. Time-Resolved Contrast Variation SAXS for Studying RNA-Protein Interactions. Biophysical Journal, 116(3), p.319a-320a.
Type: Poster
Authors: Alex Mauney, Joshua Tokuda, Yujie Chen, Lois Pollack
Citation: Mauney, A. et al., 2019. DNA Sequence and Histone Core Composition Control the Unwrapping of DNA from Nucleosome Core Particles. Biophysical Journal, 116(3), p.214a.
Type: Poster
Authors: Josue San Emeterio, Lois Pollack
Citation: San Emeterio, J., & Pollack, L. (2019). Virus Dynamics Studied by Time-Resolved Small Angle X-Ray Scattering. Biophysical Journal, 116(3), 431a. https://doi.org/10.1016/j.bpj.2018.11.2321
Type: Journal-article
Authors: William C. Thomas, Frederick P. Brooks, Mackenzie J. Parker, David A. Case, Jason T. Kaelber, JoAnne Stubbe, James Chen, Nozomi Ando
Citation: Thomas, W. C., Brooks, F. P., Parker, M. J., Case, D. A., Kaelber, J. T., Stubbe, J., Chen, J., & Ando, N. (2018). A novel form of allosteric regulation in Bacillus subtilis ribonucleotide reductase revealed by SAXS and cryo-electron microscopy. Acta Crystallographica Section A Foundations and Advances, 74(a1), a85-a85. https://doi.org/10.1107/s0108767318099142
Type: Journal-article
Authors: Mukul Sonker, Daihyun Kim, Ana Egatz-Gomez, Alexandra Ros
Citation: Sonker, M. et al., 2019. Separation Phenomena in Tailored Micro- and Nanofluidic Environments. Annual Review of Analytical Chemistry, 12(1).
Type: Journal-article
Authors: Medhanjali DasGupta, Dominik Budday, Peter Madzelan, Javier Seravalli, Brandon Hayes, Raymond G. Sierra, Roberto Alonso-Mori, Aaron S. Brewster, Nicholas K. Sauter, Gregory A. Applegate, Virendra Tiwari, David B. Berkowitz, Michael C. Thompson, James S. Fraser, Michael E. Wall, Henry van den Bedem, Mark A. Wilson
Citation: DasGupta, M. et al., 2019. Cysteine modification can gate non-equilibrium conformational dynamics during enzyme catalysis: Supplemental Information.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Shenshen Hu, Adam R. Offenbacher, Erin M. Thompson, Christine L. Gee, Jarett Wilcoxen, Cody A. M. Carr, Daniil M. Prigozhin, Vanessa Yang, Tom Alber, R. David Britt, James S. Fraser, Judith P. Klinman
Citation: Hu, S. et al., 2019. Biophysical Characterization of a Disabled Double Mutant of Soybean Lipoxygenase: The "Undoing" of Precise Substrate Positioning Relative to Metal Cofactor and an Identified Dynamical Network. Journal of the American Chemical Society, 141(4), pp.1555-1567.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Gennady Ananyev, Shatabdi Roy-Chowdhury, Colin Gates, Petra Fromme, G. Charles Dismukes
Citation: Ananyev, G. et al., 2019. The Catalytic Cycle of Water Oxidation in Crystallized Photosystem II Complexes: Performance and Requirements for Formation of Intermediates. ACS Catalysis, pp.1396-1407.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Shi-chun Du, Lan Zhu, Yu-xing Wang, Jie Liu, Die Zhang, Yu-lu Chen, Qing Peng, Wei Liu, Bin Liu
Citation: Du, S. et al., 2019. SENP1-mediated deSUMOylation of USP28 regulated HIF-1α accumulation and activation during hypoxia response. Cancer Cell International, 19(1).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Richard A. Kirian, Joe P. J. Chen, John C. H. Spence
Citation: Kirian, R.A., Chen, J.P.J. & Spence, J.C.H., 2018. Phasing Serial Crystallography Data. X-ray Free Electron Lasers, pp.235-252.
Type: Book-chapter
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Benjamin Stauch, Linda Johansson, Andrii Ishchenko, Gye Won Han, Alexander Batyuk, Vadim Cherezov
Citation: Stauch, B. et al., 2018. Advances in Structure Determination of G Protein-Coupled Receptors by SFX. X-ray Free Electron Lasers, pp.301-329.
Type: Book-chapter
Authors: Jesse Coe, Alexandra Ros
Citation: Coe, J. & Ros, A., 2018. Small Is Beautiful: Growth and Detection of Nanocrystals. X-ray Free Electron Lasers, pp.59-85.
Type: Book-chapter
Citation: Boutet, S., Fromme, P. & Hunter, M.S. eds., 2018. X-ray Free Electron Lasers.
Type: Book
Authors: Andrew J. Morgan, Kartik Ayyer, Anton Barty, Joe P. J. Chen, Tomas Ekeberg, Dominik Oberthuer, Thomas A. White, Oleksandr Yefanov, Henry N. Chapman
Citation: Morgan, A.J. et al., 2019. Ab initio phasing of the diffraction of crystals with translational disorder. Acta Crystallographica Section A Foundations and Advances, 75(1), pp.25-40.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Scott C. Jensen, Brendan Sullivan, Daniel A. Hartzler, Jose Meza Aguilar, Salah Awel, Saša Bajt, Shibom Basu, Richard Bean, Henry N. Chapman, Chelsie Conrad, Matthias Frank, Raimund Fromme, Jose M. Martin-Garcia, Thomas D. Grant, Michael Heymann, Mark S. Hunter, Gihan Ketawala, Richard A. Kirian, Juraj Knoska, Christopher Kupitz, Xuanxuan Li, Mengning Liang, Stella Lisova, Valerio Mariani, Victoria Mazalova, Marc Messerschmidt, Michael Moran, Garrett Nelson, Dominik Oberthür, Alex Schaffer, Raymond G. Sierra, Natalie Vaughn, Uwe Weierstall, Max O. Wiedorn, P. Lourdu Xavier, Jay-How Yang, Oleksandr Yefanov, Nadia A. Zatsepin, Andrew Aquila, Petra Fromme, Sébastien Boutet, Gerald T. Seidler, Yulia Pushkar
Citation: Jensen, S.C. et al., 2019. X-ray Emission Spectroscopy at X-ray Free Electron Lasers: Limits to Observation of the Classical Spectroscopic Response for Electronic Structure Analysis. The Journal of Physical Chemistry Letters, pp.441-446.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Tatsuo Oyama, Nicholas G. Hall, Kazuhiro Kobayashi
Citation: Oyama, T., Hall, N.G. & Kobayashi, K., 2018. A generalized parametric divisor method for political apportionment. International Transactions in Operational Research, 28(1), pp.327-355.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Chufeng Li, Xuanxuan Li, Richard Kirian, John C. H. Spence, Haiguang Liu, Nadia A. Zatsepin
Citation: Li, C. et al., 2019. SPIND: a reference-based auto-indexing algorithm for sparse serial crystallography data. IUCrJ, 6(1), pp.72-84.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Martin Audet, Kate L. White, Billy Breton, Barbara Zarzycka, Gye Won Han, Yan Lu, Cornelius Gati, Alexander Batyuk, Petr Popov, Jeffrey Velasquez, David Manahan, Hao Hu, Uwe Weierstall, Wei Liu, Wenqing Shui, Vsevolod Katritch, Vadim Cherezov, Michael A. Hanson, Raymond C. Stevens
Citation: Audet, M. et al., 2018. Crystal structure of misoprostol bound to the labor inducer prostaglandin E2 receptor. Nature Chemical Biology, 15(1), pp.11-17.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Daihyun Kim, Mukul Sonker, Alexandra Ros
Citation: Kim, D., Sonker, M. & Ros, A., 2018. Dielectrophoresis: From molecular to micrometer scale analytes. Analytical Chemistry.
Type: Journal-article
Authors: José A. Carmona-Negrón, Alberto Santana, Arnold L. Rheingold, Enrique Meléndez
Citation: Carmona-Negrón, J.A. et al., 2019. Synthesis, structure, docking and cytotoxic studies of ferrocene-hormone conjugates for hormone-dependent breast cancer application. Dalton Transactions.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Yen-Lin Chen, Tongsik Lee, Ron Elber, Lois Pollack
Citation: Chen, Y.-L. et al., 2018. Conformations of an RNA Helix-Junction-Helix Construct revealed by SAXS Refinement of MD Simulations. Biophysical Journal.
Type: Journal-article
Authors: Michael C Thompson, Benjamin A Barad, Alexander M Wolff, Hyun Sun Cho, Friedrich Schotte, Daniel M.C. Schwarz, Philip Anfinrud, James S Fraser
Citation: Thompson, M.C. et al., 2018. Temperature-Jump Solution X-ray Scattering Reveals Distinct Motions in a Dynamic Enzyme:
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Gydo C. P. van Zundert, Brandi M. Hudson, Saulo H. P. de Oliveira, Daniel A. Keedy, Rasmus Fonseca, Amelie Heliou, Pooja Suresh, Kenneth Borrelli, Tyler Day, James S. Fraser, Henry van den Bedem
Citation: Van Zundert, G. et al., 2018. qFit-ligand reveals widespread conformational heterogeneity of drug-like molecules in X-ray electron density maps. Journal of Medicinal Chemistry.
Type: Journal-article
Authors: Cecilia M. Casadei, Karol Nass, Anton Barty, Mark S. Hunter, Celestino Padeste, Ching-Ju Tsai, Sébastien Boutet, Marc Messerschmidt, Leonardo Sala, Garth J. Williams, Dmitry Ozerov, Matthew Coleman, Xiao-Dan Li, Matthias Frank, Bill Pedrini
Citation: Casadei, C.M. et al., 2019. Structure-factor amplitude reconstruction from serial femtosecond crystallography of two-dimensional membrane-protein crystals. IUCrJ, 6(1).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jie Zhu, Cody L. Hoop, David A. Case, Jean Baum
Citation: Zhu, J. et al., 2018. Cryptic binding sites become accessible through surface reconstruction of the type I collagen fibril. Scientific Reports, 8(1).
Type: Journal-article
Authors: Yen-Lin Chen, Julie L. Sutton, Lois Pollack
Citation: Chen, Y.-L., Sutton, J.L. & Pollack, L., 2018. How the Conformations of an Internal Junction Contribute to Fold an RNA Domain. The Journal of Physical Chemistry B.
Type: Journal-article
Authors: Kanupriya Pande, Jeffrey J. Donatelli, Erik Malmerberg, Lutz Foucar, Billy K. Poon, Markus Sutter, Sabine Botha, Shibom Basu, R. Bruce Doak, Katerina Dörner, Sascha W. Epp, Lars Englert, Raimund Fromme, Elisabeth Hartmann, Robert Hartmann, Guenter Hauser, Johan Hattne, Ahmad Hosseinizadeh, Stephan Kassemeyer, Lukas Lomb, Sebastian F. Carron Montero, Andreas Menzel, Daniel Rolles, Artem Rudenko, Marvin M. Seibert, Raymond George Sierra, Peter Schwander, Abbas Ourmazd, Petra Fromme, Nicholas K. Sauter, Michael Bogan, John Bozek, Christoph Bostedt, Ilme Schlichting, Cheryl A. Kerfeld, Petrus H. Zwart
Citation: Pande, K. et al., 2018. Free-electron laser data for multiple-particle fluctuation scattering analysis. Scientific Data, 5, p.180201.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Robb Welty, Suzette A. Pabit, Andrea M. Katz, George D. Calvey, Lois Pollack, Kathleen B. Hall
Citation: Welty, R. et al., 2018. Divalent ions tune the kinetics of a bacterial GTPase center rRNA folding transition from secondary to tertiary structure. RNA, 24(12), pp.1828-1838.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Max Rose, Sergey Bobkov, Kartik Ayyer, Ruslan P. Kurta, Dmitry Dzhigaev, Young Yong Kim, Andrew J. Morgan, Chun Hong Yoon, Daniel Westphal, Johan Bielecki, Jonas A. Sellberg, Garth Williams, Filipe R.N.C. Maia, Olexander M. Yefanov, Vyacheslav Ilyin, Adrian P. Mancuso, Henry N. Chapman, Brenda G. Hogue, Andrew Aquila, Anton Barty, Ivan A. Vartanyants
Citation: Rose, M. et al., 2018. Single-particle imaging without symmetry constraints at an X-ray free-electron laser.
Type: Component
Authors: Eaton E. Lattman, Thomas D. Grant, Edward H. Snell
Citation: Lattman, E.E., Grant, T.D. & Snell, E.H., 2018. Biological Small Angle Scattering. Oxford Scholarship Online.
Type: Book
Authors: Eaton E. Lattman, Thomas D. Grant, Edward H. Snell
Citation: Lattman, E.E., Grant, T.D. & Snell, E.H., 2018. Examples of Biological Small Angle Scattering. Oxford Scholarship Online.
Type: Book
Authors: Max Rose, Sergey Bobkov, Kartik Ayyer, Ruslan P. Kurta, Dmitry Dzhigaev, Young Yong Kim, Andrew J. Morgan, Chun Hong Yoon, Daniel Westphal, Johan Bielecki, Jonas A. Sellberg, Garth Williams, Filipe R.N.C. Maia, Olexander M. Yefanov, Vyacheslav Ilyin, Adrian P. Mancuso, Henry N. Chapman, Brenda G. Hogue, Andrew Aquila, Anton Barty, Ivan A. Vartanyants
Citation: Rose, M. et al., 2018. Single-particle imaging without symmetry constraints at an X-ray free-electron laser. IUCrJ, 5(6).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Max F. Hantke, Johan Bielecki, Olena Kulyk, Daniel Westphal, Daniel S. D. Larsson, Martin Svenda, Hemanth K. N. Reddy, Richard A. Kirian, Jakob Andreasson, Janos Hajdu, Filipe R. N. C. Maia
Citation: Hantke, M.F. et al., 2018. Rayleigh-scattering microscopy for tracking and sizing nanoparticles in focused aerosol beams. IUCrJ, 5(6).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Joanna Slawinska, Abbas Ourmazd, Dimitrios Giannakis
Citation: Slawinska, J., Ourmazd, A. & Giannakis, D., 2018. A New Approach to Signal Processing of Spatiotemporal Data. 2018 IEEE Statistical Signal Processing Workshop (SSP).
Type: Proceedings-article
Authors: Romain D. Arnal, Yun Zhao, Alok K. Mitra, John C. H. Spence, Rick P. Millane
Citation: Arnal, R.D. et al., 2018. The phase problem for two-dimensional crystals. II. Simulations. Acta Crystallographica Section A Foundations and Advances, 74(5), pp.537-544.
Type: Journal-article
Authors: Thibault Annaval, Lu Han, Jeffrey D. Rudolf, Guangbo Xie, Dong Yang, Chin-Yuan Chang, Ming Ma, Ivana Crnovcic, Mitchell D. Miller, Jayashree Soman, Weijun Xu, George N. Phillips, Ben Shen
Citation: Annaval, T. et al., 2018. Biochemical and Structural Characterization of TtnD, a Prenylated FMN-Dependent Decarboxylase from the Tautomycetin Biosynthetic Pathway. ACS Chemical Biology, 13(9), pp.2728-2738.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Nicole C. Woitowich, Andrei S. Halavaty, Patricia Waltz, Christopher Kupitz, Joseph Valera, Gregory Tracy, Kevin D. Gallagher, Elin Claesson, Takanori Nakane, Suraj Pandey, Garrett Nelson, Rie Tanaka, Eriko Nango, Eiichi Mizohata, Shigeki Owada, Kensure Tono, Yasumasa Joti, Angela C. Nugent, Hardik Patel, Ayesha Mapara, James Hopkins, Phu Duong, Dorina Bizhga, Svetlana E. Kovaleva, Rachael St. Peter, Cynthia N. Hernandez, Wesley B. Ozarowski, Shatabdi Roy-Chowdhuri, Jay-How Yang, Petra Edlund, Heikki Takala, Janne Ihalainen, Jennifer Brayshaw, Tyler Norwood, Ishwor Poudyal, Petra Fromme, John C. H. Spence, Keith Moffat, Sebastian Westenhoff, Marius Schmidt, Emina A. Stojković
Citation: Woitowich, N.C. et al., 2018. Structural basis for light control of cell development revealed by crystal structures of a myxobacterial phytochrome. IUCrJ, 5(5), pp.619-634.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: E. Han Dao, Frédéric Poitevin, Raymond G. Sierra, Cornelius Gati, Yashas Rao, Halil Ibrahim Ciftci, Fulya Akşit, Alex McGurk, Trevor Obrinski, Paul Mgbam, Brandon Hayes, Casper De Lichtenberg, Fatima Pardo-Avila, Nicholas Corsepius, Lindsey Zhang, Matthew H. Seaberg, Mark S. Hunter, Mengling Liang, Jason E. Koglin, Soichi Wakatsuki, Hasan Demirci
Citation: Dao, E.H. et al., 2018. Structure of the 30S ribosomal decoding complex at ambient temperature. RNA, 24(12), pp.1667-1676.
Type: Journal-article
Authors: Marie Luise Grünbein, Johan Bielecki, Alexander Gorel, Miriam Stricker, Richard Bean, Marco Cammarata, Katerina Dörner, Lars Fröhlich, Elisabeth Hartmann, Steffen Hauf, Mario Hilpert, Yoonhee Kim, Marco Kloos, Romain Letrun, Marc Messerschmidt, Grant Mills, Gabriela Nass Kovacs, Marco Ramilli, Christopher M. Roome, Tokushi Sato, Matthias Scholz, Michel Sliwa, Jolanta Sztuk-Dambietz, Martin Weik, Britta Weinhausen, Nasser Al-Qudami, Djelloul Boukhelef, Sandor Brockhauser, Wajid Ehsan, Moritz Emons, Sergey Esenov, Hans Fangohr, Alexander Kaukher, Thomas Kluyver, Max Lederer, Luis Maia, Maurizio Manetti, Thomas Michelat, Astrid Münnich, Florent Pallas, Guido Palmer, Gianpietro Previtali, Natascha Raab, Alessandro Silenzi, Janusz Szuba, Sandhya Venkatesan, Krzysztof Wrona, Jun Zhu, R. Bruce Doak, Robert L. Shoeman, Lutz Foucar, Jacques-Philippe Colletier, Adrian P. Mancuso, Thomas R. M. Barends, Claudiu A. Stan, Ilme Schlichting
Citation: Grünbein, M.L. et al., 2018. Megahertz data collection from protein microcrystals at an X-ray free-electron laser. Nature Communications, 9(1).
Type: Journal-article
Authors: Pablo Villanueva-Perez, Sasa Bajt, Henry N. Chapman
Citation: Villanueva-Perez, P., Bajt, S. & Chapman, H.N., 2018. Scanning Compton X-ray Microscopy. Microscopy and Microanalysis, 24(S2), pp.182-183.
Type: Journal-article
Authors: Kevin T. Murray, Andrew J. Morgan, Mauro Prasciolu, Istvan Mohacsi, Henry N. Chapman, Saša Bajt
Citation: Murray, K.T. et al., 2018. Characterization of High Numerical Aperture Multilayer Laue Lenses. Microscopy and Microanalysis, 24(S2), pp.282-283.
Type: Journal-article
Authors: Adrian P. Mancuso, Andrew Aquila, Richard Bean, Johan Bielecki, Carsten Fortmann-Grote, Klaus Giewekemeyer, Yoonhee Kim, Ruslan Kurta, Romain Letrun, Masoud Mehrjoo, Marc Messerschmidt, Grant Mills, Adam Round, Tokushi Sato, Joachim Schulz, Marcin Sikorski, Stephan Stern, Patrik Vagovic, Thomas Tschentscher
Citation: Mancuso, A.P. et al., 2018. Developments Towards Imaging Nanoscale Biology with XFELs: Some Recent Examples and a Glance to the Future. Microscopy and Microanalysis, 24(S2), pp.76-77.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: S. Botha, D. Baitan, K. E. J. Jungnickel, D. Oberthür, C. Schmidt, S. Stern, M. O. Wiedorn, M. Perbandt, H. N. Chapman, C. Betzel
Type: Journal-article
Authors: Benjamin Erk, Jan P. Müller, Cédric Bomme, Rebecca Boll, Günter Brenner, Henry N. Chapman, Jonathan Correa, Stefan Düsterer, Siarhei Dziarzhytski, Stefan Eisebitt, Heinz Graafsma, Sören Grunewald, Lars Gumprecht, Robert Hartmann, Günter Hauser, Barbara Keitel, Clemens von Korff Schmising, Marion Kuhlmann, Bastian Manschwetus, Laurent Mercadier, Erland Müller, Christopher Passow, Elke Plönjes, Daniel Ramm, Dimitrios Rompotis, Artem Rudenko, Daniela Rupp, Mario Sauppe, Frank Siewert, Dieter Schlosser, Lothar Strüder, Angad Swiderski, Simone Techert, Kai Tiedtke, Thomas Tilp, Rolf Treusch, Ilme Schlichting, Joachim Ullrich, Robert Moshammer, Thomas Möller, Daniel Rolles
Citation: Erk, B. et al., 2018. CAMP@FLASH: an end-station for imaging, electron- and ion-spectroscopy, and pump-probe experiments at the FLASH free-electron laser. Journal of Synchrotron Radiation, 25(5).
Type: Journal-article
Authors: Alexander W. Mauney, Joshua M. Tokuda, Lisa M. Gloss, Oscar Gonzalez, Lois Pollack
Citation: Mauney, A.W. et al., 2018. Local DNA Sequence Controls Asymmetry of DNA Unwrapping from Nucleosome Core Particles. Biophysical Journal.
Type: Journal-article
Authors: Max O. Wiedorn, Salah Awel, Andrew J. Morgan, Kartik Ayyer, Yaroslav Gevorkov, Holger Fleckenstein, Nils Roth, Luigi Adriano, Richard Bean, Kenneth R. Beyerlein, Joe Chen, Jesse Coe, Francisco Cruz-Mazo, Tomas Ekeberg, Rita Graceffa, Michael Heymann, Daniel A. Horke, Juraj Knoška, Valerio Mariani, Reza Nazari, Dominik Oberthür, Amit K. Samanta, Raymond G. Sierra, Claudiu A. Stan, Oleksandr Yefanov, Dimitrios Rompotis, Jonathan Correa, Benjamin Erk, Rolf Treusch, Joachim Schulz, Brenda G. Hogue, Alfonso M. Gañán-Calvo, Petra Fromme, Jochen Küpper, Andrei V. Rode, Saša Bajt, Richard A. Kirian, Henry N. Chapman
Citation: Wiedorn, M.O. et al., 2018. Rapid sample delivery for megahertz serial crystallography at X-ray FELs. IUCrJ, 5(5).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Ti-Yen Lan, Jennifer L. Wierman, Mark W. Tate, Hugh T. Philipp, Jose M. Martin-Garcia, Lan Zhu, David Kissick, Petra Fromme, Robert F. Fischetti, Wei Liu, Veit Elser, Sol M. Gruner
Citation: Lan, T.-Y. et al., 2018. Solving protein structure from sparse serial microcrystal diffraction data at a storage-ring synchrotron source. IUCrJ, 5(5).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Mary E O’Sullivan, Frédéric Poitevin, Raymond G Sierra, Cornelius Gati, E Han Dao, Yashas Rao, Fulya Aksit, Halilibrahim Ciftci, Nicholas Corsepius, Robert Greenhouse, Brandon Hayes, Mark S Hunter, Mengling Liang, Alex McGurk, Paul Mbgam, Trevor Obrinsky, Fátima Pardo-Avila, Matthew H Seaberg, Alan G Cheng, Anthony J Ricci, Hasan DeMirci
Citation: O'Sullivan, M.E. et al., 2018. Aminoglycoside ribosome interactions reveal novel conformational states at ambient temperature. Nucleic Acids Research, 46(18), pp.9793-9804.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Mary E. O'Sullivan, Frederic Poitevin, Raymond G. Sierra, Cornelius Gati, E. Han Dao, Yashas Rao, Fulya Aksit, Halilibrahim Ciftci, Nicholas Corsepius, Robert Greenhouse, Brandon Hayes, Mark S. Hunter, Mengling Liang, Alex McGurk, Paul Mbgam, Trevor Obrinsky, Fatima Pardo-Avila, Matt Seaberg, Alan G. Cheng, Anthony J. Ricci, Hasan DeMirci
Citation: O'Sullivan, M.E. et al., 2018. Aminoglycoside ribosome interactions reveal novel conformational states at ambient temperature.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: David H. Wojtas, Kartik Ayyer, Mengning Liang, Estelle Mossou, Carolin Seuring, V. Trevor Forsyth, Henry N. Chapman, Rick P. Millane
Citation: Wojtas, D.H. et al., 2017. Orientation and analysis of XFEL serial diffraction patterns from fibrous molecular assemblies. 2017 International Conference on Image and Vision Computing New Zealand (IVCNZ).
Type: Proceedings-article
Authors: Joe P. J. Chen, Richard A. Kirian
Citation: Chen, J.P.J. & Kirian, R.A., 2017. Simultaneous retrieval of coherently illuminated defocused objects. 2017 International Conference on Image and Vision Computing New Zealand (IVCNZ).
Type: Proceedings-article
Authors: Petr Popov, Yao Peng, Ling Shen, Raymond C Stevens, Vadim Cherezov, Zhi-Jie Liu, Vsevolod Katritch
Citation: Popov, P. et al., 2018. Computational design of thermostabilizing point mutations for G protein-coupled receptors. eLife, 7.
Type: Journal-article
Authors: E. E. Abola, U. Weierstall, W. Liu, V. Cherezov
Citation: Abola, E.E. et al., Chapter 2. Delivery of GPCR Crystals for Serial Femtosecond Crystallography. Chemical Biology, pp.28-53.
Type: Book-chapter
Authors: N. A. Zatsepin
Citation: Zatsepin, N.A., Chapter 8. Crystallography with X-ray Free Electron Lasers. Chemical Biology, pp.181-224.
Type: Book-chapter
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Przemyslaw Nogly, Tobias Weinert, Daniel James, Sergio Carbajo, Dmitry Ozerov, Antonia Furrer, Dardan Gashi, Veniamin Borin, Petr Skopintsev, Kathrin Jaeger, Karol Nass, Petra Båth, Robert Bosman, Jason Koglin, Matthew Seaberg, Thomas Lane, Demet Kekilli, Steffen Brünle, Tomoyuki Tanaka, Wenting Wu, Christopher Milne, Thomas White, Anton Barty, Uwe Weierstall, Valerie Panneels, Eriko Nango, So Iwata, Mark Hunter, Igor Schapiro, Gebhard Schertler, Richard Neutze, Jörg Standfuss
Citation: Nogly, P. et al., 2018. Retinal isomerization in bacteriorhodopsin captured by a femtosecond x-ray laser. Science, p.eaat0094.
Type: Journal-article
Authors: Daniel A Keedy, Zachary B Hill, Justin T Biel, Emily Kang, T Justin Rettenmaier, José Brandão-Neto, Nicholas M Pearce, Frank von Delft, James A Wells, James S Fraser
Citation: Keedy, D.A. et al., 2018. An expanded allosteric network in PTP1B by multitemperature crystallography, fragment screening, and covalent tethering. eLife, 7.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jose L. Olmos, Suraj Pandey, Jose M. Martin-Garcia, George Calvey, Andrea Katz, Juraj Knoska, Christopher Kupitz, Mark S. Hunter, Mengning Liang, Dominik Oberthuer, Oleksandr Yefanov, Max Wiedorn, Michael Heyman, Mark Holl, Kanupriya Pande, Anton Barty, Mitchell D. Miller, Stephan Stern, Shatabdi Roy-Chowdhury, Jesse Coe, Nirupa Nagaratnam, James Zook, Jacob Verburgt, Tyler Norwood, Ishwor Poudyal, David Xu, Jason Koglin, Matthew H. Seaberg, Yun Zhao, Saša Bajt, Thomas Grant, Valerio Mariani, Garrett Nelson, Ganesh Subramanian, Euiyoung Bae, Raimund Fromme, Russell Fung, Peter Schwander, Matthias Frank, Thomas A. White, Uwe Weierstall, Nadia Zatsepin, John Spence, Petra Fromme, Henry N. Chapman, Lois Pollack, Lee Tremblay, Abbas Ourmazd, George N. Phillips, Marius Schmidt
Citation: Olmos, J.L. et al., 2018. Enzyme intermediates captured "on the fly" by mix-and-inject serial crystallography. BMC Biology, 16(1).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Prakash Nepal, D. K. Saldin
Citation: Nepal, P. & Saldin, D.K., 2018. Difference structures from time-resolved small-angle and wide-angle x-ray scattering. Physical Review B, 97(19).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Kenneth R. Beyerlein, H. Olof Jönsson, Roberto Alonso-Mori, Andrew Aquila, Saša Bajt, Anton Barty, Richard Bean, Jason E. Koglin, Marc Messerschmidt, Davide Ragazzon, Dimosthenis Sokaras, Garth J. Williams, Stefan Hau-Riege, Sébastien Boutet, Henry N. Chapman, Nicuşor Tîmneanu, Carl Caleman
Citation: Beyerlein, K.R. et al., 2018. Ultrafast nonthermal heating of water initiated by an X-ray Free-Electron Laser. Proceedings of the National Academy of Sciences, p.201711220.
Type: Journal-article
Authors: Carolin Seuring, Kartik Ayyer, Eleftheria Filippaki, Miriam Barthelmess, Jean-Nicolas Longchamp, Philippe Ringler, Tommaso Pardini, David H. Wojtas, Matthew A. Coleman, Katerina Dörner, Silje Fuglerud, Greger Hammarin, Birgit Habenstein, Annette E. Langkilde, Antoine Loquet, Alke Meents, Roland Riek, Henning Stahlberg, Sébastien Boutet, Mark S. Hunter, Jason Koglin, Mengning Liang, Helen M. Ginn, Rick P. Millane, Matthias Frank, Anton Barty, Henry N. Chapman
Citation: Seuring, C. et al., 2018. Femtosecond X-ray coherent diffraction of aligned amyloid fibrils on low background graphene. Nature Communications, 9(1).
Type: Journal-article
Authors: Yannig Gicquel, Robin Schubert, Svetlana Kapis, Gleb Bourenkov, Thomas Schneider, Markus Perbandt, Christian Betzel, Henry N. Chapman, Michael Heymann
Citation: Gicquel, Y. et al., 2018. Microfluidic Chips for In Situ Crystal X-ray Diffraction and In Situ Dynamic Light Scattering for Serial Crystallography. Journal of Visualized Experiments, (134).
Type: Journal-article
Authors: Alex Plumridge, Andrea M Katz, George D Calvey, Ron Elber, Serdal Kirmizialtin, Lois Pollack
Citation: Plumridge, A. et al., 2018. Revealing the distinct folding phases of an RNA three-helix junction. Nucleic Acids Research.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Adalberto Díaz Casas, Gabriela Casanova Sepúlveda, Odalys Sánchez Negrón, Andrea P. Caro Muñiz, Stewart R. Malavé Ramos, Ana R. Cebollero López, Belinda Pastrana-Ríos
Citation: Díaz Casas, A. et al., 2018. Molecular biophysical characterization of the third FF domain of Homo sapiens Prp40 homolog A. Journal of Molecular Structure, 1167, pp.174-179.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Ali Dashti, Peter Schwander, Robert Langlois, Russell Fung, Wen Li, Ahmad Hosseinizadeh, Hstau Y. Liao, Jesper Pallesen, Gyanesh Sharma, Vera A. Stupina, Anne E. Simon, Jonathan D. Dinman, Joachim Frank, Abbas Ourmazd
Citation: Dashti, A. et al., 2018. Trajectories of the ribosome as a Brownian nanomachine. Single-Particle Cryo-Electron Microscopy, pp.463-475.
Type: Book-chapter
Authors: P. Villanueva-Perez, S. Bajt, H. N. Chapman
Citation: Villanueva-Perez, P., Bajt, S. & Chapman, H.N., 2018. Dose efficient Compton X-ray microscopy. Optica, 5(4), p.450.
Type: Journal-article
Authors: Nicolas Foos, Carolin Seuring, Robin Schubert, Anja Burkhardt, Olof Svensson, Alke Meents, Henry N. Chapman, Max H. Nanao
Citation: Foos, N. et al., 2018. X-ray and UV radiation-damage-induced phasing using synchrotron serial crystallography. Acta Crystallographica Section D Structural Biology, 74(4), pp.366-378.
Type: Journal-article
Authors: Renee Otten, Lin Liu, Lillian R. Kenner, Michael W. Clarkson, David Mavor, Dan S. Tawfik, Dorothee Kern, James S. Fraser
Citation: Otten, R. et al., 2018. Rescue of conformational dynamics in enzyme catalysis by directed evolution. Nature Communications, 9(1).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Ali Dashti, Mrinal Shekhar, Danya Ben Hail, Ghoncheh Mashayekhi, Peter Schwander, Amedee des Georges, Joachim Frank, Abhishek Singharoy, Abbas Ourmazd
Citation: Dashti, A. et al., 2018. Functional Pathways of Biomolecules Retrieved from Single-particle Snapshots.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Saša Bajt, Mauro Prasciolu, Holger Fleckenstein, Martin Domaracký, Henry N Chapman, Andrew J Morgan, Oleksandr Yefanov, Marc Messerschmidt, Yang Du, Kevin T Murray, Valerio Mariani, Manuela Kuhn, Steven Aplin, Kanupriya Pande, Pablo Villanueva-Perez, Karolina Stachnik, Joe PJ Chen, Andrzej Andrejczuk, Alke Meents, Anja Burkhardt, David Pennicard, Xiaojing Huang, Hanfei Yan, Evgeny Nazaretski, Yong S Chu, Christian E Hamm
Citation: Bajt, S. et al., 2017. X-ray focusing with efficient high-NA multilayer Laue lenses. Light: Science & Applications, 7(3), p.17162.
Type: Journal-article
Authors: Joshua M Tokuda, Ren Ren, Robert F Levendosky, Rebecca J Tay, Ming Yan, Lois Pollack, Gregory D Bowman
Citation: Tokuda, J.M. et al., 2018. The ATPase motor of the Chd1 chromatin remodeler stimulates DNA unwrapping from the nucleosome. Nucleic Acids Research, 46(10), pp.4978-4990.
Type: Journal-article
Authors: Andrii Ishchenko, Cornelius Gati, Vadim Cherezov
Citation: Ishchenko, A., Gati, C. & Cherezov, V., 2018. Structural biology of G protein-coupled receptors: new opportunities from XFELs and cryoEM. Current Opinion in Structural Biology, 51, pp.44-52.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Benjamin Stauch, Vadim Cherezov
Citation: Stauch, B. & Cherezov, V., 2018. Serial Femtosecond Crystallography of G Protein-Coupled Receptors. Annual Review of Biophysics, 47(1).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: M C Hoffmann, I Grguraš, C Behrens, C Bostedt, J Bozek, H Bromberger, R Coffee, J T Costello, L F DiMauro, Y Ding, G Doumy, W Helml, M Ilchen, R Kienberger, S Lee, A R Maier, T Mazza, M Meyer, M Messerschmidt, S Schorb, W Schweinberger, K Zhang, A L Cavalieri
Citation: Hoffmann, M.C. et al., 2018. Femtosecond profiling of shaped x-ray pulses. New Journal of Physics, 20(3), p.033008.
Type: Journal-article
Authors: Ganesh Subramanian, Xiaoyi Zhang, Gerdenis Kodis, Qingyu Kong, Cunming Liu, Andrew Chizmeshya, Uwe Weierstall, John Spence
Citation: Subramanian, G. et al., 2018. Direct Structural and Chemical Characterization of the Photolytic Intermediates of Methylcobalamin Using Time-Resolved X-ray Absorption Spectroscopy. The Journal of Physical Chemistry Letters, pp.1542-1546.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Daihyun Kim, Jinghui Luo, Edgar A. Arriaga, Alexandra Ros
Citation: Kim, D. et al., 2018. Deterministic Ratchet for Sub-micrometer (Bio)particle Separation. Analytical Chemistry.
Type: Journal-article
Authors: H. Olof Jönsson, Christofer Östlin, Howard A. Scott, Henry N. Chapman, Steve J. Aplin, Nicuşor Tîmneanu, Carl Caleman
Citation: Jönsson, H.O. et al., 2018. FreeDam - A Webtool for Free-Electron Laser-Induced Damage in Femtosecond X-ray Crystallography. High Energy Density Physics.
Type: Journal-article
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Type: Journal-article
Authors: Michael E Wall, Alexander M Wolff, James S Fraser
Citation: Wall, M.E., Wolff, A.M. & Fraser, J.S., 2018. Bringing diffuse X-ray scattering into focus. Current Opinion in Structural Biology, 50, pp.109-116.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: E. Han Dao, Frederic Poitevin, Raymond G. Sierra, Cornelius Gati, Yashas Rao, Halil Ibrahim Ciftci, Fulya Akşit, Alex McGurk, Trevor Obrinski, Paul Mgbam, Brandon Hayes, Casper de Lichtenberg, Fatima Pardo-Avila, Nicholas Corsepius, Lindsey Zhang, Matt Seaberg, Mark S. Hunter, Mengling Liang, Jason E. Koglin, Soichi Wakatsuki, Hasan DeMirci
Citation: Dao, E.H. et al., 2018. Structure of the 30S ribosomal decoding complex at ambient temperature.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Junhong Choi, Gabriele Indrisiunaite, Hasan DeMirci, Ka-Weng Ieong, Jinfan Wang, Alexey Petrov, Arjun Prabhakar, Gideon Rechavi, Dan Dominissini, Chuan He, Måns Ehrenberg, Joseph D. Puglisi
Citation: Choi, J. et al., 2018. How 2'- O -Methylation in mRNA Disrupts tRNA Decoding during Translation Elongation. Biophysical Journal, 114(3), p.592a.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Shuo Sui, Yuxi Wang, Christos Dimitrakopoulos, Sarah Perry
Citation: Sui, S. et al., 2018. A Graphene-Based Microfluidic Platform for Electrocrystallization and In Situ X-ray Diffraction. Crystals, 8(2), p.76.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Dan Bi Lee, Jong-Min Kim, Jong Hyeon Seok, Ji-Hye Lee, Jae Deok Jo, Ji Young Mun, Chelsie Conrad, Jesse Coe, Garrett Nelson, Brenda Hogue, Thomas A. White, Nadia Zatsepin, Uwe Weierstall, Anton Barty, Henry Chapman, Petra Fromme, John Spence, Mi Sook Chung, Chang-Hyun Oh, Kyung Hyun Kim
Citation: Lee, D.B. et al., 2018. Supersaturation-controlled microcrystallization and visualization analysis for serial femtosecond crystallography. Scientific Reports, 8(1).
Type: Journal-article
Authors: Thomas D Grant
Citation: Grant, T.D., 2018. Ab initio electron density determination directly from solution scattering data. Nature Methods.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Salah Awel, Richard A. Kirian, Max O. Wiedorn, Kenneth R. Beyerlein, Nils Roth, Daniel A. Horke, Dominik Oberthür, Juraj Knoska, Valerio Mariani, Andrew Morgan, Luigi Adriano, Alexandra Tolstikova, P. Lourdu Xavier, Oleksandr Yefanov, Andrew Aquila, Anton Barty, Shatabdi Roy-Chowdhury, Mark S. Hunter, Daniel James, Joseph S. Robinson, Uwe Weierstall, Andrei V. Rode, Saša Bajt, Jochen Küpper, Henry N. Chapman
Citation: Awel, S. et al., 2018. Femtosecond X-ray diffraction from an aerosolized beam of protein nanocrystals. Journal of Applied Crystallography, 51(1), pp.133-139.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Gydo CP van Zundert, Brandi M Hudson, Daniel A Keedy, Rasmus Fonseca, Amelie Heliou, Pooja Suresh, Kenneth Borrelli, Tyler Day, James S Fraser, Henry van den Bedem
Citation: Van Zundert, G.C. et al., 2018. qFit-ligand reveals widespread conformational heterogeneity of drug-like molecules in X-ray electron density maps.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: B. Dicke, A. Hoffmann, J. Stanek, M. S. Rampp, B. Grimm-Lebsanft, F. Biebl, D. Rukser, B. Maerz, D. Göries, M. Naumova, M. Biednov, G. Neuber, A. Wetzel, S. M. Hofmann, P. Roedig, A. Meents, J. Bielecki, J. Andreasson, K. R. Beyerlein, H. N. Chapman, C. Bressler, W. Zinth, M. Rübhausen, S. Herres-Pawlis
Citation: Dicke, B. et al., 2018. Transferring the entatic-state principle to copper photochemistry. Nature Chemistry.
Type: Journal-article
Authors: Tao Che, Susruta Majumdar, Saheem A. Zaidi, Pauline Ondachi, John D. McCorvy, Sheng Wang, Philip D. Mosier, Rajendra Uprety, Eyal Vardy, Brian E. Krumm, Gye Won Han, Ming-Yue Lee, Els Pardon, Jan Steyaert, Xi-Ping Huang, Ryan T. Strachan, Alexandra R. Tribo, Gavril W. Pasternak, F. Ivy Carroll, Raymond C. Stevens, Vadim Cherezov, Vsevolod Katritch, Daniel Wacker, Bryan L. Roth
Citation: Che, T. et al., 2018. Structure of the Nanobody-Stabilized Active State of the Kappa Opioid Receptor. Cell, 172(1-2), pp.55-67.e15.
Type: Journal-article
Authors: Jana Broecker, Takefumi Morizumi, Wei-Lin Ou, Viviane Klingel, Anling Kuo, David J Kissick, Andrii Ishchenko, Ming-Yue Lee, Shenglan Xu, Oleg Makarov, Vadim Cherezov, Craig M Ogata, Oliver P Ernst
Citation: Broecker, J. et al., 2018. High-throughput in situ X-ray screening of and data collection from protein crystals at room temperature and under cryogenic conditions. Nature Protocols, 13(2), pp.260-292.
Type: Journal-article
Authors: Zheng Li, Anton Classen, Tao Peng, Nikita Medvedev, Fenglin Wang, Henry N. Chapman, Yanhua Shih
Citation: Li, Z. et al., 2017. Thermal x-ray diffraction and near-field phase contrast imaging. EPL (Europhysics Letters), 120(1), p.16003.
Type: Journal-article
Authors: Cecilia M. Casadei, Ching-Ju Tsai, Anton Barty, Mark S. Hunter, Nadia A. Zatsepin, Celestino Padeste, Guido Capitani, W. Henry Benner, Sébastien Boutet, Stefan P. Hau-Riege, Christopher Kupitz, Marc Messerschmidt, John I. Ogren, Tom Pardini, Kenneth J. Rothschild, Leonardo Sala, Brent Segelke, Garth J. Williams, James E. Evans, Xiao-Dan Li, Matthew Coleman, Bill Pedrini, Matthias Frank
Citation: Casadei, C.M. et al., 2018. Resolution extension by image summing in serial femtosecond crystallography of two-dimensional membrane-protein crystals. IUCrJ, 5(1), pp.103-117.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Cecilia M. Casadei, Ching-Ju Tsai, Anton Barty, Mark S. Hunter, Nadia A. Zatsepin, Celestino Padeste, Guido Capitani, W. Henry Benner, Sébastien Boutet, Stefan P. Hau-Riege, Christopher Kupitz, Marc Messerschmidt, John I. Ogren, Tom Pardini, Kenneth J. Rothschild, Leonardo Sala, Brent Segelke, Garth J. Williams, James E. Evans, Xiao-Dan Li, Matthew Coleman, Bill Pedrini, Matthias Frank
Citation: Casadei, C.M. et al., 2018. Resolution extension by image summing in serial femtosecond crystallography of two-dimensional membrane-protein crystals.
Type: Component
Authors: Thomas E. Cleveland, Wei He, Angela C. Evans, Nicholas O. Fischer, Edmond Y. Lau, Matthew A. Coleman, Paul Butler
Citation: Cleveland, T.E. et al., 2017. Small-angle X-ray and neutron scattering demonstrates that cell-free expression produces properly formed disc-shaped nanolipoprotein particles. Protein Science.
Type: Journal-article
Authors: Dominik Oberthuer, Juraj Knoška, Max Oliver Wiedorn, Saša Bajt, Henry N. Chapman
Citation: Oberthuer, D. et al., 2017. Time-resolved mixing-jet X-ray free-electron laser crystallography experiments. Acta Crystallographica Section A Foundations and Advances, 73(a2), pp.C835-C835.
Type: Journal-article
Authors: Ganesh Subramanian, Gerdenis Kodis, Andrew Chizmeshya, Qingyu Kong, Xiaoyi Zhang, Uwe Weierstall, John Spence
Citation: Subramanian, G. et al., 2017. Picosecond to microsecond TR-XAS: intermediates in the photolysis of methylcobalamin. Acta Crystallographica Section A Foundations and Advances, 73(a2), pp.C1129-C1129.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Helena Taberman, Charles S. Bury, Kristin A. Sutton, Edward H. Snell, Elspeth F. Garman
Citation: Taberman, H. et al., 2017. Mechanism and X-ray damage: beware of artefacts in xylose isomerase. Acta Crystallographica Section A Foundations and Advances, 73(a2), pp.C232-C232.
Type: Journal-article
Authors: R. F. Fischetti, J. Martin-Garcia, N. Zatsepin, N. Stander, L. Zhu, G. Subramanian, G. Nelson, J. Coe, N. Nagaratnam, S. Roy-Chowdury, D. Kissick, A. Ishchenko, C. Conrad, G. Ketawala, D. James, J. Zook, C. Ogata, N. Venugopalan, S. Xu, A. Meents, V. Srajer, R. Henning, H. Chapman, J. Spence, U. Weierstall, V. Cherezov, P. Fromme, W. Liu
Citation: Fischetti, R.F. et al., 2017. Monochromatic and polychromatic serial crystallography at the Advanced Photon Source. Acta Crystallographica Section A Foundations and Advances, 73(a1), pp.a368-a369.
Type: Journal-article
Authors: J. R. Stagno, Y. Liu, Y. R. Bhandari, C. E. Conrad, S. Panja, M. Swain, L. Fan, G. Nelson, C. Li, D. R. Wendel, T. A. White, J. D. Coe, M. O. Wiedorn, J. Knoska, D. Oberthuer, R. A. Tuckey, P. Yu, M. Dyba, S. G. Tarasov, U. Weierstall, T. D. Grant, C. D. Schwieters, J. Zhang, A. R. Ferré-D'Amaré, P. Fromme, D. E. Draper, M. Liang, M. S. Hunter, S. Boutet, K. Tan, X. Zuo, X. Ji, A. Barty, N. A. Zatsepin, H. N. Chapman, J. C. H. Spence, S. A. Woodson, Y.-X. Wang
Citation: Stagno, J.R. et al., 2017. Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography. Acta Crystallographica Section A Foundations and Advances, 73(a1), pp.a92-a92.
Type: Journal-article
Authors: A. Meents, M. O. Wiedorn, V. Srajer, R. Henning, I. Sarrou, J. Bergtholdt, M. Barthelmess, P. Reinke, D. Dierksmeyer, A. Tolstikova, S. Schaible, M. Messerschmidt, C. M. Ogata, D. J. Kissick, M. Taft, D. Manstein, J. Lieske, D. Oberthuer, R. F. Fischetti, H. N. Chapman
Citation: Meents, A. et al., 2017. Low-background pink-beam serial crystallography. Acta Crystallographica Section A Foundations and Advances, 73(a1), pp.a405-a405.
Type: Journal-article
Authors: Cornelius Gati, Dominik Oberthuer, Oleksandr Yefanov, Richard D. Bunker, Peter Metcalf, Anton Barty, Henry N. Chapman
Citation: Gati, C. et al., 2017. Atomic structure of granulin determined from native nanocrystalline granulovirus using an X-ray free-electron laser. Acta Crystallographica Section A Foundations and Advances, 73(a1), pp.a292-a293.
Type: Journal-article
Authors: Joe P. J. Chen, Richard A. Kirian
Citation: Chen, J.P.J. & Kirian, R.A., 2017. Phase-retrieval algorithms for direct phasing of coherent nanocrystal diffraction. Acta Crystallographica Section A Foundations and Advances, 73(a1), pp.a239-a239.
Type: Journal-article
Authors: Jessica L. Thomaston, Rahel A. Woldeyes, Takanori Nakane, Kotaro Koiwai, Ayumi Yamashita, Tomoyuki Tanaka, Toshi Arima, Jun Kobayashi, Tetsuya Masuda, Mamoru Suzuki, Michihiro Sugahara, Rie Tanaka, Eriko Nango, So Iwata, Fumiaki Yumoto, James S. Fraser, William F. DeGrado
Citation: Thomaston, J.L. et al., 2017. XFEL structures of the influenza M2 proton channel at 1.4......: room-temperature water networks and insights into proton conduction. Acta Crystallographica Section A Foundations and Advances, 73(a1), pp.a40-a40.
Type: Journal-article
Authors: Edward H. Snell, M. Elizabeth Snell, Oliver B. Zeldin, Geoffrey W. Grime, Elspeth F. Garman
Citation: Snell, E.H. et al., 2017. The influence of promiscuous metals on metalloprotein structure: complementary techniques to separate the good, the bad and the ugly. Acta Crystallographica Section A Foundations and Advances, 73(a1), pp.a237-a237.
Type: Journal-article
Authors: Yingyuan Sun, Aaron P. Roznowski, Joshua M. Tokuda, Thomas Klose, Alexander Mauney, Lois Pollack, Bentley A. Fane, Michael G. Rossmann
Citation: Sun, Y. et al., 2017. Structural changes of tailless bacteriophage ΦX174 during penetration of bacterial cell walls. Proceedings of the National Academy of Sciences, p.201716614.
Type: Journal-article
Authors: Marius Schmidt, Dilano K. Saldin
Citation: Schmidt, M. & Saldin, D.K., 2017. Publisher's Note: "Enzyme transient state kinetics in crystal and solution from the perspective of a time-resolved crystallographer" [Struct. Dyn. 1, 024701 (2014)]. Structural Dynamics, 4(6), p.069901.
Type: Journal-article
Authors: Daniel A Keedy, Zachary B Hill, Justin T Biel, Emily Kang, T. Justin Rettenmaier, Jose Brandao-Neto, Nicholas M Pearce, Frank von Delft, James A. Wells, James S Fraser
Citation: Keedy, D.A. et al., 2017. New routes for PTP1B allosteric inhibition by multitemperature crystallography, fragment screening and covalent tethering.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Mohammad Towshif Rabbani, Christoph F. Schmidt, Alexandra Ros
Citation: Rabbani, M.T., Schmidt, C.F. & Ros, A., 2017. Single-Walled Carbon Nanotubes Probed with Insulator-Based Dielectrophoresis. Analytical Chemistry, 89(24), pp.13235-13244.
Type: Journal-article
Authors: Marjan Hadian-Jazi, Marc Messerschmidt, Connie Darmanin, Klaus Giewekemeyer, Adrian P. Mancuso, Brian Abbey
Citation: Hadian-Jazi, M. et al., 2017. A peak-finding algorithm based on robust statistical analysis in serial crystallography. Journal of Applied Crystallography, 50(6), pp.1705-1715.
Type: Journal-article
Authors: Cody Hoop, Jie Zhu, Ana Nunes, David Case, Jean Baum
Citation: Hoop, C. et al., 2017. Revealing Accessibility of Cryptic Protein Binding Sites within the Functional Collagen Fibril. Biomolecules, 7(4), p.76.
Type: Journal-article
Authors: A. Meents, M. O. Wiedorn, V. Srajer, R. Henning, I. Sarrou, J. Bergtholdt, M. Barthelmess, P. Y. A. Reinke, D. Dierksmeyer, A. Tolstikova, S. Schaible, M. Messerschmidt, C. M. Ogata, D. J. Kissick, M. H. Taft, D. J. Manstein, J. Lieske, D. Oberthuer, R. F. Fischetti, H. N. Chapman
Citation: Meents, A. et al., 2017. Pink-beam serial crystallography. Nature Communications, 8(1).
Type: Journal-article
Authors: G. Blaj, C. J. Kenney, S. Boutet, G. Carini, M. Chollet, G. Dakovski, G. Haller, P. Hart, S. Herrmann, J. Koglin, M. Messerschmidt, S. Nelson, J. Pines, S. Song, J. Thayer, A. Tomada, G. Williams
Citation: Blaj, G. et al., 2016. Performance of silicon drift detectors at LCLS. 2016 IEEE Nuclear Science Symposium, Medical Imaging Conference and Room-Temperature Semiconductor Detector Workshop (NSS/MIC/RTSD).
Type: Proceedings-article
Authors: Xuanxuan Li, Chun-Ya Chiu, Hsiang-Ju Wang, Stephan Kassemeyer, Sabine Botha, Robert L Shoeman, Robert M Lawrence, Christopher Kupitz, Richard Kirian, Daniel James, Dingjie Wang, Garrett Nelson, Marc Messerschmidt, Sébastien Boutet, Garth J Williams, Elisabeth Hartmann, Aliakbar Jafarpour, Lutz M Foucar, Anton Barty, Henry Chapman, Mengning Liang, Andreas Menzel, Fenglin Wang, Shibom Basu, Raimund Fromme, R.Bruce Doak, Petra Fromme, Uwe Weierstall, Michael H Huang, John C.H Spence, Ilme Schlichting, Brenda G Hogue, Haiguang Liu
Citation: Li, X. et al., 2017. Corrigendum: Diffraction data of core-shell nanoparticles from an X-ray free electron laser. Scientific Data, 4, p.170154.
Type: Journal-article
Authors: David H. Wojtas, Kartik Ayyer, Mengning Liang, Estelle Mossou, Filippo Romoli, Carolin Seuring, Kenneth R. Beyerlein, Richard J. Bean, Andrew J. Morgan, Dominik Oberthuer, Holger Fleckenstein, Michael Heymann, Cornelius Gati, Oleksandr Yefanov, Miriam Barthelmess, Eirini Ornithopoulou, Lorenzo Galli, P. Lourdu Xavier, Wai Li Ling, Matthias Frank, Chun Hong Yoon, Thomas A. White, Saša Bajt, Anna Mitraki, Sebastien Boutet, Andrew Aquila, Anton Barty, V. Trevor Forsyth, Henry N. Chapman, Rick P. Millane
Citation: Wojtas, D.H. et al., 2017. Analysis of XFEL serial diffraction data from individual crystalline fibrils. IUCrJ, 4(6), pp.795-811.
Type: Journal-article
Authors: Duan-Zhuo Li, Shun-Fang Liu, Lan Zhu, Yu-Xing Wang, Yi-Xiang Chen, Jie Liu, Gang Hu, Xin Yu, Jian Li, Jin Zhang, Zhi-Xiang Wu, Han Lu, Wei Liu, Bin Liu
Citation: Li, D.-Z. et al., 2017. FBXW8-dependent degradation of MRFAP1 in anaphase controls mitotic cell death. Oncotarget, 8(57).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Max O. Wiedorn, Salah Awel, Andrew J. Morgan, Miriam Barthelmess, Richard Bean, Kenneth R. Beyerlein, Leonard M. G. Chavas, Niko Eckerskorn, Holger Fleckenstein, Michael Heymann, Daniel A. Horke, Juraj Knoška, Valerio Mariani, Dominik Oberthür, Nils Roth, Oleksandr Yefanov, Anton Barty, Saša Bajt, Jochen Küpper, Andrei V. Rode, Richard A. Kirian, Henry N. Chapman
Citation: Wiedorn, M.O. et al., 2017. Post-sample aperture for low background diffraction experiments at X-ray free-electron lasers. Journal of Synchrotron Radiation, 24(6), pp.1296-1298.
Type: Journal-article
Authors: Jose Olmos, Suraj Pandey, Jose M. Martin-Garcia, George Calvey, Andrea Katz, Juray Knoska, Christopher Kupitz, Mark S. Hunter, Mengning Liang, Dominik Oberthuer, Oleksandr Yefanov, Max Wiedorn, Michael Heymann, Mark Holl, Kanupriya Pande, Anton Barty, Mitchell D. Miller, Stephan Stern, Shatabdi Roy-Chowdhury, Jesse D. Coe, Nirupa Nagaratnam, James Zook, Jacob Verburgt, Tyler Norwood, Ishwor Poudyal, David Xu, Jason Koglin, Matt Seaberg, Yun Zhao, Sasa Bajt, Thomas Grant, Valerio Mariani, Garrett Nelson, Ganesh Subramanian, Euiyoung Bae, Raimund Fromme, Russel Fung, Peter Schwander, Matthias Frank, Thomas White, Uwe Weierstall, Nadia Zatsepin, John Spence, Petra Fromme, Henry N. Chapman, Lois Pollack, Lee Tremblay, Abbas Ourmazd, George N. Phillips, Marius Schmidt
Citation: Olmos, J. et al., 2017. Enzyme Intermediates Captured "on-the-fly" by Mix-and-Inject Serial Crystallography.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Ruslan P. Kurta, Jeffrey J. Donatelli, Chun Hong Yoon, Peter Berntsen, Johan Bielecki, Benedikt J. Daurer, Hasan DeMirci, Petra Fromme, Max Felix Hantke, Filipe R. N. C. Maia, Anna Munke, Carl Nettelblad, Kanupriya Pande, Hemanth K. N. Reddy, Jonas A. Sellberg, Raymond G. Sierra, Martin Svenda, Gijs van der Schot, Ivan A. Vartanyants, Garth J. Williams, P. Lourdu Xavier, Andrew Aquila, Peter H. Zwart, Adrian P. Mancuso
Citation: Kurta, R.P. et al., 2017. Correlations in Scattered X-Ray Laser Pulses Reveal Nanoscale Structural Features of Viruses. Physical Review Letters, 119(15).
Type: Journal-article
Authors: G. Blaj, C. J. Kenney, A. Dragone, G. Carini, S. Herrmann, P. Hart, A. Tomada, J. Koglin, G. Haller, S. Boutet, M. Messerschmidt, G. Williams, M. Chollet, G. Dakovski, S. Nelson, J. Pines, S. Song, J. Thayer
Citation: Blaj, G. et al., 2017. Optimal Pulse Processing, Pile-Up Decomposition, and Applications of Silicon Drift Detectors at LCLS. IEEE Transactions on Nuclear Science, 64(11), pp.2854-2868.
Type: Journal-article
Authors: Kenneth R. Beyerlein, Dennis Dierksmeyer, Valerio Mariani, Manuela Kuhn, Iosifina Sarrou, Angelica Ottaviano, Salah Awel, Juraj Knoska, Silje Fuglerud, Olof Jönsson, Stephan Stern, Max O. Wiedorn, Oleksandr Yefanov, Luigi Adriano, Richard Bean, Anja Burkhardt, Pontus Fischer, Michael Heymann, Daniel A. Horke, Katharina E. J. Jungnickel, Elena Kovaleva, Olga Lorbeer, Markus Metz, Jan Meyer, Andrew Morgan, Kanupriya Pande, Saravanan Panneerselvam, Carolin Seuring, Aleksandra Tolstikova, Julia Lieske, Steve Aplin, Manfred Roessle, Thomas A. White, Henry N. Chapman, Alke Meents, Dominik Oberthuer
Citation: Beyerlein, K.R. et al., 2017. Mix-and-diffuse serial synchrotron crystallography. IUCrJ, 4(6), pp.769-777.
Type: Journal-article
Authors: Ruben A. Dilanian, Victor Streltsov, Hannah D. Coughlan, Harry M. Quiney, Andrew V. Martin, Nectarios Klonis, Con Dogovski, Sébastien Boutet, Marc Messerschmidt, Garth J. Williams, Sophie Williams, Nicholas W. Phillips, Keith A. Nugent, Leann Tilley, Brian Abbey
Citation: Dilanian, R.A. et al., 2017. Nanocrystallography measurements of early stage synthetic malaria pigment. Journal of Applied Crystallography, 50(5), pp.1533-1540.
Type: Journal-article
Authors: Xuanxuan Li, John C. H. Spence, Brenda G. Hogue, Haiguang Liu
Citation: Li, X. et al., 2017. Merging single-shot XFEL diffraction data from inorganic nanoparticles: a new approach to size and orientation determination. IUCrJ, 4(6), pp.741-750.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Henry N Chapman, Petra Fromme
Citation: Chapman, H.N. & Fromme, P., 2017. Structure determination based on continuous diffraction from macromolecular crystals. Current Opinion in Structural Biology, 45, pp.170-177.
Type: Journal-article
Authors: Joe P. J. Chen, Richard A. Kirian
Citation: Chen, J.P.J. & Kirian, R.A., 2017. Phase retrieval in the presence of multiplicative noise J. J. Dolne & R. P. Millane, eds. Unconventional and Indirect Imaging, Image Reconstruction, and Wavefront Sensing 2017.
Type: Proceedings-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Renee Otten, Lin Liu, Lillian R. Kenner, Michael W. Clarkson, David Mavor, Dan S. Tawfik, Dorothee Kern, James S. Fraser
Citation: Otten, R. et al., 2017. Rescue of Conformational Dynamics in Enzyme Catalysis by Directed Evolution.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jessica L. Thomaston, Rahel A. Woldeyes, Takanori Nakane, Ayumi Yamashita, Tomoyuki Tanaka, Kotaro Koiwai, Aaron S. Brewster, Benjamin A. Barad, Yujie Chen, Thomas Lemmin, Monarin Uervirojnangkoorn, Toshi Arima, Jun Kobayashi, Tetsuya Masuda, Mamoru Suzuki, Michihiro Sugahara, Nicholas K. Sauter, Rie Tanaka, Osamu Nureki, Kensuke Tono, Yasumasa Joti, Eriko Nango, So Iwata, Fumiaki Yumoto, James S. Fraser, William F. DeGrado
Citation: Thomaston, J.L. et al., 2017. XFEL structures of the influenza M2 proton channel: Room temperature water networks and insights into proton conduction. Proceedings of the National Academy of Sciences, 114(51), pp.13357-13362.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Ahmad Hosseinizadeh, Ghoncheh Mashayekhi, Jeremy Copperman, Peter Schwander, Ali Dashti, Reyhaneh Sepehr, Russell Fung, Marius Schmidt, Chun Hong Yoon, Brenda G Hogue, Garth J Williams, Andrew Aquila, Abbas Ourmazd
Citation: Hosseinizadeh, A. et al., 2017. Conformational landscape of a virus by single-particle X-ray scattering. Nature Methods.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Anton Classen, Kartik Ayyer, Henry N. Chapman, Ralf Röhlsberger, Joachim von Zanthier
Citation: Classen, A. et al., 2017. Incoherent Diffractive Imaging via Intensity Correlations of Hard X Rays. Physical Review Letters, 119(5).
Type: Journal-article
Authors: Timothy M. Acker, Jonathan E. Gable, Markus-Frederik Bohn, Priyadarshini Jaishankar, Michael C. Thompson, James S. Fraser, Adam R. Renslo, Charles S. Craik
Citation: Acker, T.M. et al., 2017. Allosteric Inhibitors, Crystallography, and Comparative Analysis Reveal Network of Coordinated Movement across Human Herpesvirus Proteases. Journal of the American Chemical Society.
Type: Journal-article
Authors: X. Edward Zhou, Yuanzheng He, Parker W. de Waal, Xiang Gao, Yanyong Kang, Ned Van Eps, Yanting Yin, Kuntal Pal, Devrishi Goswami, Thomas A. White, Anton Barty, Naomi R. Latorraca, Henry N. Chapman, Wayne L. Hubbell, Ron O. Dror, Raymond C. Stevens, Vadim Cherezov, Vsevolod V. Gurevich, Patrick R. Griffin, Oliver P. Ernst, Karsten Melcher, H. Eric Xu
Citation: Zhou, X.E. et al., 2017. Identification of Phosphorylation Codes for Arrestin Recruitment by G Protein-Coupled Receptors. Cell, 170(3), pp.457-469.e13.
Type: Journal-article
Authors: Wei He, Martina Felderman, Angela C. Evans, Jia Geng, David Homan, Feliza Bourguet, Nicholas O. Fischer, Yuanpei Li, Kit S. Lam, Aleksandr Noy, Li Xing, R. Holland Cheng, Amy Rasley, Craig D. Blanchette, Kurt Kamrud, Nathaniel Wang, Heather Gouvis, Todd C. Peterson, Bolyn Hubby, Matthew A. Coleman
Citation: He, W. et al., 2017. Cell-free production of a functional oligomeric form of aChlamydiamajor outer-membrane protein (MOMP) for vaccine development. Journal of Biological Chemistry, 292(36), pp.15121-15132.
Type: Journal-article
Authors: Volker Piotter, Alexander Klein, Klaus Plewa, Kenneth R. Beyerlein, Henry N. Chapman, Saša Bajt
Citation: Piotter, V. et al., 2017. Development of a ceramic injection molding process for liquid jet nozzles to be applied for X-ray free-electron lasers. Microsystem Technologies.
Type: Journal-article
Authors: Linda C. Johansson, Benjamin Stauch, Andrii Ishchenko, Vadim Cherezov
Citation: Johansson, L.C. et al., 2017. A Bright Future for Serial Femtosecond Crystallography with XFELs. Trends in Biochemical Sciences.
Type: Journal-article
Authors: Masoud Mehrjoo, Klaus Giewekemeyer, Patrik Vagovič, Stephan Stern, Richard Bean, Marc Messerschmidt, Barbara Keitel, Elke Plönjes, Marion Kuhlmann, Tobias Mey, Evgeny A. Schneidmiller, Mikhail V. Yurkov, Torsten Limberg, Adrian P. Mancuso
Citation: Mehrjoo, M. et al., 2017. Single-shot determination of focused FEL wave fields using iterative phase retrieval. Optics Express, 25(15), p.17892.
Type: Journal-article
Authors: Andrii Ishchenko, Daniel Wacker, Mili Kapoor, Ai Zhang, Gye Won Han, Shibom Basu, Nilkanth Patel, Marc Messerschmidt, Uwe Weierstall, Wei Liu, Vsevolod Katritch, Bryan L. Roth, Raymond C. Stevens, Vadim Cherezov
Citation: Ishchenko, A. et al., 2017. Structural insights into the extracellular recognition of the human serotonin 2B receptor by an antibody. Proceedings of the National Academy of Sciences, p.201700891.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Izumi Ishigami, Nadia A. Zatsepin, Masahide Hikita, Chelsie E. Conrad, Garrett Nelson, Jesse D. Coe, Shibom Basu, Thomas D. Grant, Matthew H. Seaberg, Raymond G. Sierra, Mark S. Hunter, Petra Fromme, Raimund Fromme, Syun-Ru Yeh, Denis L. Rousseau
Citation: Ishigami, I. et al., 2017. Crystal structure of CO-bound cytochrome c oxidase determined by serial femtosecond X-ray crystallography at room temperature. Proceedings of the National Academy of Sciences, p.201705628.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Kenneth R. Beyerlein, Thomas A. White, Oleksandr Yefanov, Cornelius Gati, Ivan G. Kazantsev, Nicolai Fog-Gade Nielsen, Peter M. Larsen, Henry N. Chapman, Søren Schmidt
Citation: Beyerlein, K.R. et al., 2017. FELIX: an algorithm for indexing multiple crystallites in X-ray free-electron laser snapshot diffraction images. Journal of Applied Crystallography, 50(4).
Type: Journal-article
Authors: Henry N. Chapman, Oleksandr M. Yefanov, Kartik Ayyer, Thomas A. White, Anton Barty, Andrew Morgan, Valerio Mariani, Dominik Oberthuer, Kanupriya Pande
Citation: Chapman, H.N. et al., 2017. Continuous diffraction of molecules and disordered molecular crystals. Journal of Applied Crystallography, 50(4).
Type: Journal-article
Authors: Vukica Šrajer, Marius Schmidt
Citation: Šrajer, V. & Schmidt, M., 2017. Watching proteins function with time-resolved x-ray crystallography. Journal of Physics D: Applied Physics, 50(37), p.373001.
Type: Journal-article
Authors: Andrew J. Amaya, Harshad Pathak, Viraj P. Modak, Hartawan Laksmono, N. Duane Loh, Jonas A. Sellberg, Raymond G. Sierra, Trevor A. McQueen, Matt J. Hayes, Garth J. Williams, Marc Messerschmidt, Sébastien Boutet, Michael J. Bogan, Anders Nilsson, Claudiu A. Stan, Barbara E. Wyslouzil
Citation: Amaya, A.J. et al., 2017. How Cubic Can Ice Be? The Journal of Physical Chemistry Letters, pp.3216-3222.
Type: Journal-article
Authors: Hemanth K.N. Reddy, Chun Hong Yoon, Andrew Aquila, Salah Awel, Kartik Ayyer, Anton Barty, Peter Berntsen, Johan Bielecki, Sergey Bobkov, Maximilian Bucher, Gabriella A. Carini, Sebastian Carron, Henry Chapman, Benedikt Daurer, Hasan DeMirci, Tomas Ekeberg, Petra Fromme, Janos Hajdu, Max Felix Hanke, Philip Hart, Brenda G. Hogue, Ahmad Hosseinizadeh, Yoonhee Kim, Richard A. Kirian, Ruslan P. Kurta, Daniel S.D. Larsson, N. Duane Loh, Filipe R.N.C. Maia, Adrian P. Mancuso, Kerstin Mühlig, Anna Munke, Daewoong Nam, Carl Nettelblad, Abbas Ourmazd, Max Rose, Peter Schwander, Marvin Seibert, Jonas A. Sellberg, Changyong Song, John C.H. Spence, Martin Svenda, Gijs Van der Schot, Ivan A. Vartanyants, Garth J. Williams, P. Lourdu Xavier
Citation: Reddy, H.K.N. et al., 2017. Coherent soft X-ray diffraction imaging of coliphage PR772 at the Linac coherent light source. Scientific Data, 4, p.170079.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Sung Kim, Sandi Wibowo, Dilano Saldin
Citation: Kim, S., Wibowo, S. & Saldin, D., 2017. Algorithm for Reconstruction of 3D Images of Nanorice Particles from Diffraction Patterns of Two Particles in Independent Random Orientations with an X-ray Laser. Applied Sciences, 7(7), p.646.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Pius S. Padayatti, Josephine H. Leung, Paween Mahinthichaichan, Emad Tajkhorshid, Andrii Ishchenko, Vadim Cherezov, S. Michael Soltis, J. Baz Jackson, C. David Stout, Robert B. Gennis, Qinghai Zhang
Citation: Padayatti, P.S. et al., 2017. Critical Role of Water Molecules in Proton Translocation by the Membrane-Bound Transhydrogenase. Structure, 25(7), pp.1111-1119.e3.
Type: Journal-article
Authors: Vojtech Vozda, Pavel Boháček, Tomáš Burian, Jaromir Chalupský, Vera Hájková, Libor Juha, Ludek Vyšín, Jérôme Gaudin, Philip A. Heimann, Stefan P. Hau-Riege, Marek Jurek, Dorota Klinger, Jacek Krzywinski, Marc Messerschmidt, Stefan P. Moeller, Robert Nagler, Jerzy B. Pelka, Michael Rowen, William F. Schlotter, Michele L. Swiggers, Harald Sinn, Ryszard Sobierajski, Kai Tiedtke, Sven Toleikis, Thomas Tschentscher, Joshua J. Turner, Hubertus Wabnitz, Art J. Nelson, Maria V. Kozlova, Sam M. Vinko, Thomas Whitcher, Thomas Dzelzainis, Oldrich Renner, Karel Saksl, Roland R. Fäustlin, Ali R. Khorsand, Marta Fajardo, Bianca S. Iwan, Jakob Andreasson, Janos Hajdu, Nicusor Timneanu, Justin S. Wark, David Riley, Richard W. Lee, Mitsuru Nagasono, Makina Yabashi
Citation: Vozda, V. et al., 2017. Non-thermal damage to lead tungstate induced by intense short-wavelength laser radiation (Conference Presentation) L. Juha, S. Bajt, & R. Soufli, eds. Damage to VUV, EUV, and X-ray Optics VI.
Type: Proceedings-article
Authors: Dominik Oberthuer, Juraj Knoška, Max O. Wiedorn, Kenneth R. Beyerlein, David A. Bushnell, Elena G. Kovaleva, Michael Heymann, Lars Gumprecht, Richard A. Kirian, Anton Barty, Valerio Mariani, Aleksandra Tolstikova, Luigi Adriano, Salah Awel, Miriam Barthelmess, Katerina Dörner, P. Lourdu Xavier, Oleksandr Yefanov, Daniel R. James, Garrett Nelson, Dingjie Wang, George Calvey, Yujie Chen, Andrea Schmidt, Michael Szczepek, Stefan Frielingsdorf, Oliver Lenz, Edward Snell, Philip J. Robinson, Božidar Šarler, Grega Belšak, Marjan Maček, Fabian Wilde, Andrew Aquila, Sébastien Boutet, Mengning Liang, Mark S. Hunter, Patrick Scheerer, John D. Lipscomb, Uwe Weierstall, Roger D. Kornberg, John C. H. Spence, Lois Pollack, Henry N. Chapman, Saša Bajt
Citation: Oberthuer, D. et al., 2017. Corrigendum: Double-flow focused liquid injector for efficient serial femtosecond crystallography. Scientific Reports, 7, p.46846.
Type: Journal-article
Authors: Yi Zheng, Gye Won Han, Ruben Abagyan, Beili Wu, Raymond C. Stevens, Vadim Cherezov, Irina Kufareva, Tracy M. Handel
Citation: Zheng, Y. et al., 2017. Structure of CC Chemokine Receptor 5 with a Potent Chemokine Antagonist Reveals Mechanisms of Chemokine Recognition and Molecular Mimicry by HIV. Immunity, 46(6), pp.1005-1017.e5.
Type: Journal-article
Authors: Tiffany M. Scharadin, Wei He, Yianni Yiannakou, Alexey A. Tomilov, Matthew Saldana, Gino A. Cortopassi, Kermit L. Carraway, Matthew A. Coleman, Paul T. Henderson
Citation: Scharadin, T.M. et al., 2017. Synthesis and biochemical characterization of EGF receptor in a water-soluble membrane model system L. Buday, ed. PLOS ONE, 12(6), p.e0177761.
Type: Journal-article
Authors: David Popp, N. Duane Loh, Habiba Zorgati, Umesh Ghoshdastider, Lu Ting Liow, Magdalena I. Ivanova, Mårten Larsson, Daniel P. DePonte, Richard Bean, Kenneth R. Beyerlein, Cornelius Gati, Dominik Oberthuer, David Arnlund, Gisela Brändén, Peter Berntsen, Duilio Cascio, Leonard M. G. Chavas, Joe P. J. Chen, Ke Ding, Holger Fleckenstein, Lars Gumprecht, Rajiv Harimoorthy, Estelle Mossou, Michael R. Sawaya, Aaron S. Brewster, Johan Hattne, Nicholas K. Sauter, Marvin Seibert, Carolin Seuring, Francesco Stellato, Thomas Tilp, David S. Eisenberg, Marc Messerschmidt, Garth J. Williams, Jason E. Koglin, Lee Makowski, Rick P. Millane, Trevor Forsyth, Sébastien Boutet, Thomas A. White, Anton Barty, Henry Chapman, Swaine L. Chen, Mengning Liang, Richard Neutze, Robert C. Robinson
Citation: Popp, D. et al., 2017. Flow-aligned, single-shot fiber diffraction using a femtosecond X-ray free-electron laser. Cytoskeleton.
Type: Journal-article
Authors: John C. H. Spence
Citation: Spence, J.C.H., 2017. Outrunning damage: Electrons vs X-rays--timescales and mechanisms. Structural Dynamics, 4(4), p.044027.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Andrii Ishchenko, Enrique E. Abola, Vadim Cherezov
Citation: Ishchenko, A., Abola, E.E. & Cherezov, V., 2017. Crystallization of Membrane Proteins: An Overview. Protein Crystallography, pp.117-141.
Type: Book-chapter
Authors: Marius Schmidt
Citation: Schmidt, M., 2017. Time-Resolved Macromolecular Crystallography at Modern X-Ray Sources. Protein Crystallography, pp.273-294.
Type: Book-chapter
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jose M. Martin-Garcia, Chelsie E. Conrad, Garrett Nelson, Natasha Stander, Nadia A. Zatsepin, James Zook, Lan Zhu, James Geiger, Eugene Chun, David Kissick, Mark C. Hilgart, Craig Ogata, Andrii Ishchenko, Nirupa Nagaratnam, Shatabdi Roy-Chowdhury, Jesse Coe, Ganesh Subramanian, Alexander Schaffer, Daniel James, Gihan Ketwala, Nagarajan Venugopalan, Shenglan Xu, Stephen Corcoran, Dale Ferguson, Uwe Weierstall, John C. H. Spence, Vadim Cherezov, Petra Fromme, Robert F. Fischetti, Wei Liu
Citation: Martin-Garcia, J.M. et al., 2017. Serial millisecond crystallography of membrane and soluble protein microcrystals using synchrotron radiation. IUCrJ, 4(4).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Haonan Zhang, Anna Qiao, Dehua Yang, Linlin Yang, Antao Dai, Chris de Graaf, Steffen Reedtz-Runge, Venkatasubramanian Dharmarajan, Hui Zhang, Gye Won Han, Thomas D. Grant, Raymond G. Sierra, Uwe Weierstall, Garrett Nelson, Wei Liu, Yanhong Wu, Limin Ma, Xiaoqing Cai, Guangyao Lin, Xiaoai Wu, Zhi Geng, Yuhui Dong, Gaojie Song, Patrick R. Griffin, Jesper Lau, Vadim Cherezov, Huaiyu Yang, Michael A. Hanson, Raymond C. Stevens, Qiang Zhao, Hualiang Jiang, Ming-Wei Wang, Beili Wu
Citation: Zhang, Haonan et al., 2017. Structure of the full-length glucagon class B G-protein-coupled receptor. Nature.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Xianjun Zhang, Fei Zhao, Yiran Wu, Jun Yang, Gye Won Han, Suwen Zhao, Andrii Ishchenko, Lintao Ye, Xi Lin, Kang Ding, Venkatasubramanian Dharmarajan, Patrick R. Griffin, Cornelius Gati, Garrett Nelson, Mark S. Hunter, Michael A. Hanson, Vadim Cherezov, Raymond C. Stevens, Wenfu Tan, Houchao Tao, Fei Xu
Citation: Zhang, X. et al., 2017. Crystal structure of a multi-domain human smoothened receptor in complex with a super stabilizing ligand. Nature Communications, 8, p.15383.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Kevin Campbell, Erin E. Karski, Aleksandra Olow, David A. Edmondson, Ayano C. Kohlgruber, Matthew Coleman, Daphne A. Haas-Kogan, Katherine K. Matthay, Steven G. DuBois
Citation: Campbell, K. et al., 2017. Peripheral Blood Biomarkers Associated With Toxicity and Treatment Characteristics After 131 I- Metaiodobenzylguanidine Therapy in Patients With Neuroblastoma. International Journal of Radiation Oncology*Biology*Physics, 99(2), pp.468-475.
Type: Journal-article
Authors: Andrii Ishchenko, Lingling Peng, Egor Zinovev, Alexey Vlasov, Sung Chang Lee, Alexander Kuklin, Alexey Mishin, Valentin Borshchevskiy, Qinghai Zhang, Vadim Cherezov
Citation: Ishchenko, A. et al., 2017. Chemically Stable Lipids for Membrane Protein Crystallization. Crystal Growth & Design.
Type: Journal-article
Authors: J. C. H. Spence
Citation: Spence, J.C.H., 2017. XFELs for structure and dynamics in biology. IUCrJ, 4(4), pp.322-339.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Mimi C. Yung, Feliza A. Bourguet, Timothy S. Carpenter, Matthew A. Coleman
Citation: Yung, M.C. et al., 2017. Re-directing bacterial microcompartment systems to enhance recombinant expression of lysis protein E from bacteriophage ϕX174 in Escherichia coli. Microbial Cell Factories, 16(1).
Type: Journal-article
Authors: Athiya Mahmud Hanna, Oriol Vendrell, Abbas Ourmazd, Robin Santra
Citation: Hanna, A.M. et al., 2017. Laser control over the ultrafast Coulomb explosion of N22+ after Auger decay: A quantum-dynamics investigation. Physical Review A, 95(4).
Type: Journal-article
Authors: John C.H. Spence
Citation: Spence, J.C.H., 2017. X-Ray Lasers in Biology. Advances in Imaging and Electron Physics, pp.103-152.
Type: Book-chapter
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Petra Fromme, John C. H. Spence
Citation: Fromme, P. & Spence, J.C.H., 2017. Split-Second Reactions. Scientific American, 316(5), pp.62-67.
Type: Journal-article
Authors: Mark A Herzik, James Fraser, Gabriel C Lander
Citation: Herzik, M.A., Fraser, J. & Lander, G.C., 2017. A multi-model approach to assessing local and global cryo-EM map quality.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Justin T. Biel, Michael C. Thompson, Christian N. Cunningham, Jacob E. Corn, James S. Fraser
Citation: Biel, J.T. et al., 2017. Flexibility and Design: Conformational Heterogeneity along the Evolutionary Trajectory of a Redesigned Ubiquitin. Structure, 25(5), pp.739-749.e3.
Type: Journal-article
Authors: Xuanxuan Li, Chun-Ya Chiu, Hsiang-Ju Wang, Stephan Kassemeyer, Sabine Botha, Robert L. Shoeman, Robert M. Lawrence, Christopher Kupitz, Richard Kirian, Daniel James, Dingjie Wang, Garrett Nelson, Marc Messerschmidt, Sébastien Boutet, Garth J. Williams, Elisabeth Hartmann, Aliakbar Jafarpour, Lutz M. Foucar, Anton Barty, Henry Chapman, Mengning Liang, Andreas Menzel, Fenglin Wang, Shibom Basu, Raimund Fromme, R. Bruce Doak, Petra Fromme, Uwe Weierstall, Michael H. Huang, John C. H. Spence, Ilme Schlichting, Brenda G. Hogue, Haiguang Liu
Citation: Li, X. et al., 2017. Diffraction data of core-shell nanoparticles from an X-ray free electron laser. Scientific Data, 4, p.170048.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Benedikt J. Daurer, Kenta Okamoto, Johan Bielecki, Filipe R. N. C. Maia, Kerstin Mühlig, M. Marvin Seibert, Max F. Hantke, Carl Nettelblad, W. Henry Benner, Martin Svenda, Nicuşor Tîmneanu, Tomas Ekeberg, N. Duane Loh, Alberto Pietrini, Alessandro Zani, Asawari D. Rath, Daniel Westphal, Richard A. Kirian, Salah Awel, Max O. Wiedorn, Gijs van der Schot, Gunilla H. Carlsson, Dirk Hasse, Jonas A. Sellberg, Anton Barty, Jakob Andreasson, Sébastien Boutet, Garth Williams, Jason Koglin, Inger Andersson, Janos Hajdu, Daniel S. D. Larsson
Citation: Daurer, B.J. et al., 2017. Experimental strategies for imaging bioparticles with femtosecond hard X-ray pulses. IUCrJ, 4(3).
Type: Journal-article
Authors: Haitao Zhang, Gye Won Han, Alexander Batyuk, Andrii Ishchenko, Kate L. White, Nilkanth Patel, Anastasiia Sadybekov, Beata Zamlynny, Michael T. Rudd, Kaspar Hollenstein, Alexandra Tolstikova, Thomas A. White, Mark S. Hunter, Uwe Weierstall, Wei Liu, Kerim Babaoglu, Eric L. Moore, Ryan D. Katz, Jennifer M. Shipman, Margarita Garcia-Calvo, Sujata Sharma, Payal Sheth, Stephen M. Soisson, Raymond C. Stevens, Vsevolod Katritch, Vadim Cherezov
Citation: Zhang, H. et al., 2017. Structural basis for selectivity and diversity in angiotensin II receptors. Nature, 544(7650), pp.327-332.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Yahli Lorch, Roger D. Kornberg
Citation: Lorch, Y. & Kornberg, R.D., 2017. Chromatin-remodeling for transcription. Quarterly Reviews of Biophysics, 50.
Type: Journal-article
Authors: Dominik Oberthuer, Juraj Knoška, Max O. Wiedorn, Kenneth R. Beyerlein, David A. Bushnell, Elena G. Kovaleva, Michael Heymann, Lars Gumprecht, Richard A. Kirian, Anton Barty, Valerio Mariani, Aleksandra Tolstikova, Luigi Adriano, Salah Awel, Miriam Barthelmess, Katerina Dörner, P. Lourdu Xavier, Oleksandr Yefanov, Daniel R. James, Garrett Nelson, Dingjie Wang, George Calvey, Yujie Chen, Andrea Schmidt, Michael Szczepek, Stefan Frielingsdorf, Oliver Lenz, Edward Snell, Philip J. Robinson, Božidar Šarler, Grega Belšak, Marjan Maček, Fabian Wilde, Andrew Aquila, Sébastien Boutet, Mengning Liang, Mark S. Hunter, Patrick Scheerer, John D. Lipscomb, Uwe Weierstall, Roger D. Kornberg, John C. H. Spence, Lois Pollack, Henry N. Chapman, Saša Bajt
Citation: Oberthuer, D. et al., 2017. Double-flow focused liquid injector for efficient serial femtosecond crystallography. Scientific Reports, 7, p.44628.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Katherine A. Niessen, Mengyang Xu, Alessandro Paciaroni, Andrea Orecchini, Edward H. Snell, Andrea G. Markelz
Citation: Niessen, K.A. et al., 2017. Moving in the Right Direction: Protein Vibrational Steering Function. Biophysical Journal, 112(5), pp.933-942.
Type: Journal-article
Authors: Denise J. Trans, Ruoli Bai, J. Bennet Addison, Ruiwu Liu, Ernest Hamel, Matthew A. Coleman, Paul T. Henderson
Citation: Trans, D.J. et al., 2017. Synthesis of two fluorescent GTPγS molecules and their biological relevance. Nucleosides, Nucleotides and Nucleic Acids, 36(6), pp.379-391.
Type: Journal-article
Authors: Franklin D Fuller, Sheraz Gul, Ruchira Chatterjee, E Sethe Burgie, Iris D Young, Hugo Lebrette, Vivek Srinivas, Aaron S Brewster, Tara Michels-Clark, Jonathan A Clinger, Babak Andi, Mohamed Ibrahim, Ernest Pastor, Casper de Lichtenberg, Rana Hussein, Christopher J Pollock, Miao Zhang, Claudiu A Stan, Thomas Kroll, Thomas Fransson, Clemens Weninger, Markus Kubin, Pierre Aller, Louise Lassalle, Philipp Bräuer, Mitchell D Miller, Muhamed Amin, Sergey Koroidov, Christian G Roessler, Marc Allaire, Raymond G Sierra, Peter T Docker, James M Glownia, Silke Nelson, Jason E Koglin, Diling Zhu, Matthieu Chollet, Sanghoon Song, Henrik Lemke, Mengning Liang, Dimosthenis Sokaras, Roberto Alonso-Mori, Athina Zouni, Johannes Messinger, Uwe Bergmann, Amie K Boal, J Martin Bollinger, Carsten Krebs, Martin Högbom, George N Phillips, Richard D Vierstra, Nicholas K Sauter, Allen M Orville, Jan Kern, Vittal K Yachandra, Junko Yano
Citation: Fuller, F.D. et al., 2017. Drop-on-demand sample delivery for studying biocatalysts in action at X-ray free-electron lasers. Nature Methods, 14(4), pp.443-449.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: John C.H. Spence
Citation: Spence, J.C.H., 2017. Ondrej Krivanek's early scientific research. Ultramicroscopy, 180, pp.8-13.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jörg Standfuss, John Spence
Citation: Standfuss, J. & Spence, J., 2017. Serial crystallography at synchrotrons and X-ray lasers. IUCrJ, 4(2), pp.100-101.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Sun Kyung Kim, Lindsey Barron, Cynthia S. Hinck, Elyse M. Petrunak, Kristin E. Cano, Avinash Thangirala, Brian Iskra, Molly Brothers, Machell Vonberg, Belinda Leal, Blair Richter, Ravindra Kodali, Alexander B. Taylor, Shoucheng Du, Christopher O. Barnes, Traian Sulea, Guillermo Calero, P. John Hart, Matthew J. Hart, Borries Demeler, Andrew P. Hinck
Citation: Kim, S.K. et al., 2017. An Engineered TGF-β Monomer that Functions as a Dominant Negative to Block TGF-β Signaling. Journal of Biological Chemistry, p.jbc.M116.768754.
Type: Journal-article
Authors: Arpan Deb, William A. Johnson, Alexander P. Kline, Boston J. Scott, Lydia R. Meador, Dustin Srinivas, Jose M. Martin-Garcia, Katerina Dörner, Chad R. Borges, Rajeev Misra, Brenda G. Hogue, Petra Fromme, Tsafrir S. Mor
Citation: Deb, A. et al., 2017. Bacterial expression, correct membrane targeting and functional folding of the HIV-1 membrane protein Vpu using a periplasmic signal peptide M. Schindler, ed. PLOS ONE, 12(2), p.e0172529.
Type: Journal-article
Authors: Premila P. Samuel, William C. Ou, George N. Phillips, John S. Olson
Citation: Samuel, P.P. et al., 2017. Mechanism of Human Apohemoglobin Unfolding. Biochemistry, 56(10), pp.1444-1459.
Type: Journal-article
Authors: Hou-Fu Guo, Eun Jeong Cho, Ashwini K. Devkota, Yulong Chen, William Russell, George N. Phillips, Mitsuo Yamauchi, Kevin N. Dalby, Jonathan M. Kurie
Citation: Guo, H.-F. et al., 2017. A scalable lysyl hydroxylase 2 expression system and luciferase-based enzymatic activity assay. Archives of Biochemistry and Biophysics, 618, pp.45-51.
Type: Journal-article
Authors: Alex Plumridge, Steve P. Meisburger, Kurt Andresen, Lois Pollack
Citation: Plumridge, A. et al., 2017. The impact of base stacking on the conformations and electrostatics of single-stranded DNA. Nucleic Acids Research.
Type: Journal-article
Authors: Cornelius Gati, Dominik Oberthuer, Oleksandr Yefanov, Richard D. Bunker, Francesco Stellato, Elaine Chiu, Shin-Mei Yeh, Andrew Aquila, Shibom Basu, Richard Bean, Kenneth R. Beyerlein, Sabine Botha, Sébastien Boutet, Daniel P. DePonte, R. Bruce Doak, Raimund Fromme, Lorenzo Galli, Ingo Grotjohann, Daniel R. James, Christopher Kupitz, Lukas Lomb, Marc Messerschmidt, Karol Nass, Kimberly Rendek, Robert L. Shoeman, Dingjie Wang, Uwe Weierstall, Thomas A. White, Garth J. Williams, Nadia A. Zatsepin, Petra Fromme, John C. H. Spence, Kenneth N. Goldie, Johannes A. Jehle, Peter Metcalf, Anton Barty, Henry N. Chapman
Citation: Gati, C. et al., 2017. Atomic structure of granulin determined from native nanocrystalline granulovirus using an X-ray free-electron laser. Proceedings of the National Academy of Sciences, 114(9), pp.2247-2252.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: M Jason de la Cruz, Johan Hattne, Dan Shi, Paul Seidler, Jose Rodriguez, Francis E Reyes, Michael R Sawaya, Duilio Cascio, Simon C Weiss, Sun Kyung Kim, Cynthia S Hinck, Andrew P Hinck, Guillermo Calero, David Eisenberg, Tamir Gonen
Citation: De la Cruz, M.J. et al., 2017. Atomic-resolution structures from fragmented protein crystals with the cryoEM method MicroED. Nature Methods, 14(4), pp.399-402.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Sherif I Elshahawi, Hongnan Cao, Khaled A Shaaban, Larissa V Ponomareva, Thangaiah Subramanian, Mark L Farman, H Peter Spielmann, George N Phillips, Jon S Thorson, Shanteri Singh
Citation: Elshahawi, S.I. et al., 2017. Structure and specificity of a permissive bacterial C-prenyltransferase. Nature Chemical Biology, 13(4), pp.366-368.
Type: Journal-article
Authors: Ebrahim Aboualizadeh, Mahsa Ranji, Christine M. Sorenson, Reyhaneh Sepehr, Nader Sheibani, Carol J. Hirschmugl
Citation: Aboualizadeh, E. et al., 2017. Retinal oxidative stress at the onset of diabetes determined by synchrotron FTIR widefield imaging: towards diabetes pathogenesis. The Analyst, 142(7), pp.1061-1072.
Type: Journal-article
Authors: Nathan S. Babcock, David A. Sivak, Daniel Keedy, James S. Fraser
Citation: Babcock, N.S. et al., 2017. Model Comparison to Identify Structural Heterogeneity in Protein X-Ray Crystallography. Biophysical Journal, 112(3), p.486a.
Type: Journal-article
Authors: Marius Schmidt
Citation: Schmidt, M., 2017. A short history of structure based research on the photocycle of photoactive yellow protein. Structural Dynamics, 4(3), p.032201.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Shigeki Nagai, Ralph E. Davis, Pierre Jean Mattei, Kyle Patrick Eagen, Roger D. Kornberg
Citation: Nagai, S. et al., 2017. Chromatin potentiates transcription. Proceedings of the National Academy of Sciences, 114(7), pp.1536-1541.
Type: Journal-article
Authors: Madison B. Adolph, Anjuman Ara, Yuqing Feng, Cristina J. Wittkopp, Michael Emerman, James S. Fraser, Linda Chelico
Citation: Adolph, M.B. et al., 2017. Cytidine deaminase efficiency of the lentiviral viral restriction factor APOBEC3C correlates with dimerization. Nucleic Acids Research, 45(6), pp.3378-3394.
Type: Journal-article
Authors: Andrea M. Katz, Igor S. Tolokh, Suzette A. Pabit, Nathan Baker, Alexey V. Onufriev, Lois Pollack
Citation: Katz, A.M. et al., 2017. Spermine Condenses DNA, but Not RNA Duplexes. Biophysical Journal, 112(1), pp.22-30.
Type: Journal-article
Authors: Ryan R. Hughes, Khaled A. Shaaban, Jianjun Zhang, Hongnan Cao, George N. Phillips, Jon S. Thorson
Citation: Hughes, R.R. et al., 2017. OleD Loki as a Catalyst for Tertiary Amine and Hydroxamate Glycosylation. ChemBioChem, 18(4), pp.363-367.
Type: Journal-article
Authors: Yujie Chen, Joshua M. Tokuda, Traci Topping, Steve P. Meisburger, Suzette A. Pabit, Lisa M. Gloss, Lois Pollack
Citation: Chen, Y. et al., 2016. Asymmetric unwrapping of nucleosomal DNA propagates asymmetric opening and dissociation of the histone core. Proceedings of the National Academy of Sciences, 114(2), pp.334-339.
Type: Journal-article
Authors: Marina Popovska-Gorevski, Margarita L. Dubocovich, Rajendram V. Rajnarayanan
Citation: Popovska-Gorevski, M., Dubocovich, M.L. & Rajnarayanan, R.V., 2017. Carbamate Insecticides Target Human Melatonin Receptors. Chemical Research in Toxicology, 30(2), pp.574-582.
Type: Journal-article
Authors: Silvia Russi, Ana González, Lillian R. Kenner, Daniel A. Keedy, James S. Fraser, Henry van den Bedem
Citation: Russi, S. et al., 2017. Conformational variation of proteins at room temperature is not dominated by radiation damage. Journal of Synchrotron Radiation, 24(1), pp.73-82.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Christopher Kupitz, Jose L. Olmos, Mark Holl, Lee Tremblay, Kanupriya Pande, Suraj Pandey, Dominik Oberthür, Mark Hunter, Mengning Liang, Andrew Aquila, Jason Tenboer, George Calvey, Andrea Katz, Yujie Chen, Max O. Wiedorn, Juraj Knoska, Alke Meents, Valerio Majriani, Tyler Norwood, Ishwor Poudyal, Thomas Grant, Mitchell D. Miller, Weijun Xu, Aleksandra Tolstikova, Andrew Morgan, Markus Metz, Jose M. Martin-Garcia, James D. Zook, Shatabdi Roy-Chowdhury, Jesse Coe, Nirupa Nagaratnam, Domingo Meza, Raimund Fromme, Shibom Basu, Matthias Frank, Thomas White, Anton Barty, Sasa Bajt, Oleksandr Yefanov, Henry N. Chapman, Nadia Zatsepin, Garrett Nelson, Uwe Weierstall, John Spence, Peter Schwander, Lois Pollack, Petra Fromme, Abbas Ourmazd, George N. Phillips, Marius Schmidt
Citation: Kupitz, C. et al., 2017. Structural enzymology using X-ray free electron lasers. Structural Dynamics, 4(4), p.044003.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Alex Plumridge, Steve P. Meisburger, Lois Pollack
Citation: Plumridge, A., Meisburger, S.P. & Pollack, L., 2016. Visualizing single-stranded nucleic acids in solution. Nucleic Acids Research, p.gkw1297.
Type: Journal-article
Authors: Paul V. Jones, Gabriel L. Salmon, Alexandra Ros
Citation: Jones, P.V., Salmon, G.L. & Ros, A., 2017. Continuous Separation of DNA Molecules by Size Using Insulator-Based Dielectrophoresis. Analytical Chemistry, 89(3), pp.1531-1539.
Type: Journal-article
Authors: Yi Zheng, Ling Qin, Natalia V. Ortiz Zacarías, Henk de Vries, Gye Won Han, Martin Gustavsson, Marta Dabros, Chunxia Zhao, Robert J. Cherney, Percy Carter, Dean Stamos, Ruben Abagyan, Vadim Cherezov, Raymond C. Stevens, Adriaan P. IJzerman, Laura H. Heitman, Andrew Tebben, Irina Kufareva, Tracy M. Handel
Citation: Zheng, Y. et al., 2016. Structure of CC chemokine receptor 2 with orthosteric and allosteric antagonists. Nature, 540(7633), pp.458-461.
Type: Journal-article
Authors: Petra Fromme, Andrej Sali
Citation: Fromme, P. & Sali, A., 2016. Editorial overview: Biophysical and molecular biological methods. Current Opinion in Structural Biology, 40, pp.ix-xi.
Type: Journal-article
Authors: Iris D. Young, Mohamed Ibrahim, Ruchira Chatterjee, Sheraz Gul, Franklin D. Fuller, Sergey Koroidov, Aaron S. Brewster, Rosalie Tran, Roberto Alonso-Mori, Thomas Kroll, Tara Michels-Clark, Hartawan Laksmono, Raymond G. Sierra, Claudiu A. Stan, Rana Hussein, Miao Zhang, Lacey Douthit, Markus Kubin, Casper de Lichtenberg, Long Vo Pham, Håkan Nilsson, Mun Hon Cheah, Dmitriy Shevela, Claudio Saracini, Mackenzie A. Bean, Ina Seuffert, Dimosthenis Sokaras, Tsu-Chien Weng, Ernest Pastor, Clemens Weninger, Thomas Fransson, Louise Lassalle, Philipp Bräuer, Pierre Aller, Peter T. Docker, Babak Andi, Allen M. Orville, James M. Glownia, Silke Nelson, Marcin Sikorski, Diling Zhu, Mark S. Hunter, Thomas J. Lane, Andy Aquila, Jason E. Koglin, Joseph Robinson, Mengning Liang, Sébastien Boutet, Artem Y. Lyubimov, Monarin Uervirojnangkoorn, Nigel W. Moriarty, Dorothee Liebschner, Pavel V. Afonine, David G. Waterman, Gwyndaf Evans, Philippe Wernet, Holger Dobbek, William I. Weis, Axel T. Brunger, Petrus H. Zwart, Paul D. Adams, Athina Zouni, Johannes Messinger, Uwe Bergmann, Nicholas K. Sauter, Jan Kern, Vittal K. Yachandra, Junko Yano
Citation: Young, I.D. et al., 2016. Structure of photosystem II and substrate binding at room temperature. Nature, 540(7633), pp.453-457.
Type: Journal-article
Authors: Victoria Kabanova, Marius Schmidt, Friedrich Schotte, Marco Cammarata, Michael Wulff
Citation: Kabanova, V. et al., 2016. Simulations of single-pulse Laue diffraction from proteins with radiation from synchrotron and XFEL sources. Acta Crystallographica Section A Foundations and Advances, 72(a1), pp.s142-s142.
Type: Journal-article
Authors: Przemyslaw Nogly, Valerie Panneels, Garrett Nelson, Cornelius Gati, Tetsunari Kimura, Christopher Milne, Despina Milathianaki, Minoru Kubo, Wenting Wu, Chelsie Conrad, Jesse Coe, Richard Bean, Yun Zhao, Petra Bath, Robert Dods, Rajiv Harimoorthy, Kenneth Beyerlein, Jan Rheinberger, Daniel James, Daniel DePonte, Chufeng Li, Leonardo Sala, Garth Williams, Mark Hunter, Jason E. Koglin, Peter Berntsen, Eriko Nango, So Iwata, Henry Chapman, Petra Fromme, Matthias Frank, Rafael Abela, Sébastien Boutet, Anton Barty, Thomas A. White, Uwe Weierstall, John Spence, Richard Neutze, Gebhard Schertler, Jörg Standfuss
Citation: Nogly, P. et al., 2016. Lipidic cubic phase injector is a viable crystal delivery system for time-resolved serial crystallography. Acta Crystallographica Section A Foundations and Advances, 72(a1), pp.s41-s42.
Type: Journal-article
Authors: Andrew E. Bruno, Alexei S. Soares, Robin L. Owen, Edward H. Snell
Citation: Bruno, A.E. et al., 2016. The use of haptic interfaces and web services in crystallography: an application for a `screen to beam' interface. Journal of Applied Crystallography, 49(6), pp.2082-2090.
Type: Journal-article
Authors: J. R. Stagno, Y. Liu, Y. R. Bhandari, C. E. Conrad, S. Panja, M. Swain, L. Fan, G. Nelson, C. Li, D. R. Wendel, T. A. White, J. D. Coe, M. O. Wiedorn, J. Knoska, D. Oberthuer, R. A. Tuckey, P. Yu, M. Dyba, S. G. Tarasov, U. Weierstall, T. D. Grant, C. D. Schwieters, J. Zhang, A. R. Ferré-D’Amaré, P. Fromme, D. E. Draper, M. Liang, M. S. Hunter, S. Boutet, K. Tan, X. Zuo, X. Ji, A. Barty, N. A. Zatsepin, H. N. Chapman, J. C. H. Spence, S. A. Woodson, Y.-X. Wang
Citation: Stagno, J.R. et al., 2016. Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography. Nature, 541(7636), pp.242-246.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Richard A. Kirian, Salah Awel, Max Wiedorn, Daniel Horke, Nils Roth, Niko O. Eckerskorn, Jochen Küpper, Henry N. Chapman, Andrei V. Rode
Citation: Kirian, R.A. et al., 2016. Development of a photophoretic optical guide for femtosecond x-ray diffractive imaging of aerosolized nanoparticles (Conference Presentation) K. Dholakia & G. C. Spalding, eds. Optical Trapping and Optical Micromanipulation XIII.
Type: Proceedings-article
Authors: Mark S. Hunter, Chun Hong Yoon, Hasan DeMirci, Raymond G. Sierra, E. Han Dao, Radman Ahmadi, Fulya Aksit, Andrew L. Aquila, Halilibrahim Ciftci, Serge Guillet, Matt J. Hayes, Thomas J. Lane, Meng Liang, Ulf Lundström, Jason E. Koglin, Paul Mgbam, Yashas Rao, Lindsey Zhang, Soichi Wakatsuki, James M. Holton, Sébastien Boutet
Citation: Hunter, M.S. et al., 2016. Selenium single-wavelength anomalous diffraction de novo phasing using an X-ray-free electron laser. Nature Communications, 7, p.13388.
Type: Journal-article
Authors: Jian Min Zuo, John C.H. Spence
Citation: Zuo, J.M. & Spence, J.C.H., 2017. Advanced Transmission Electron Microscopy.
Type: Book
Authors: Petra Edlund, Heikki Takala, Elin Claesson, Léocadie Henry, Robert Dods, Heli Lehtivuori, Matthijs Panman, Kanupriya Pande, Thomas White, Takanori Nakane, Oskar Berntsson, Emil Gustavsson, Petra Båth, Vaibhav Modi, Shatabdi Roy-Chowdhury, James Zook, Peter Berntsen, Suraj Pandey, Ishwor Poudyal, Jason Tenboer, Christopher Kupitz, Anton Barty, Petra Fromme, Jake D. Koralek, Tomoyuki Tanaka, John Spence, Mengning Liang, Mark S. Hunter, Sebastien Boutet, Eriko Nango, Keith Moffat, Gerrit Groenhof, Janne Ihalainen, Emina A. Stojković, Marius Schmidt, Sebastian Westenhoff
Citation: Edlund, P. et al., 2016. The room temperature crystal structure of a bacterial phytochrome determined by serial femtosecond crystallography. Scientific Reports, 6(1).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Justin T Biel, Michael C Thompson, Christian N Cunningham, Jacob E Corn, James S Fraser
Citation: Biel, J.T. et al., 2016. Flexibility and design: conformational heterogeneity along the evolutionary trajectory of a redesigned ubiquitin.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Oliver Rawashdeh, Shannon J. Clough, Randall L. Hudson, Margarita L. Dubocovich
Citation: Rawashdeh, O. et al., 2017. Learned motivation drives circadian physiology in the absence of the master circadian clock. The FASEB Journal, 31(1), pp.388-399.
Type: Journal-article
Authors: Artem Y Lyubimov, Monarin Uervirojnangkoorn, Oliver B Zeldin, Qiangjun Zhou, Minglei Zhao, Aaron S Brewster, Tara Michels-Clark, James M Holton, Nicholas K Sauter, William I Weis, Axel T Brunger
Citation: Lyubimov, A.Y. et al., 2016. Advances in X-ray free electron laser (XFEL) diffraction data processing applied to the crystal structure of the synaptotagmin-1 / SNARE complex. eLife, 5.
Type: Journal-article
Authors: Jin Xiang, Eugene Chun, Chang Liu, Liang Jing, Zina Al-Sahouri, Lan Zhu, Wei Liu
Citation: Xiang, J. et al., 2016. Successful Strategies to Determine High-Resolution Structures of GPCRs. Trends in Pharmacological Sciences, 37(12), pp.1055-1069.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: J P J Chen, R D Arnal, A J Morgan, R J Bean, K R Beyerlein, H N Chapman, P J Bones, R P Millane, R A Kirian
Citation: Chen, J.P.J. et al., 2016. Reconstruction of an object from diffraction intensities averaged over multiple object clusters. Journal of Optics, 18(11), p.114003.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jacques-Philippe Colletier, Michael R. Sawaya, Mari Gingery, Jose A. Rodriguez, Duilio Cascio, Aaron S. Brewster, Tara Michels-Clark, Robert H. Hice, Nicolas Coquelle, Sébastien Boutet, Garth J. Williams, Marc Messerschmidt, Daniel P. DePonte, Raymond G. Sierra, Hartawan Laksmono, Jason E. Koglin, Mark S. Hunter, Hyun-Woo Park, Monarin Uervirojnangkoorn, Dennis K. Bideshi, Axel T. Brunger, Brian A. Federici, Nicholas K. Sauter, David S. Eisenberg
Citation: Colletier, J.-P. et al., 2016. De novo phasing with X-ray laser reveals mosquito larvicide BinAB structure. Nature, 539(7627), pp.43-47.
Type: Journal-article
Authors: Derek Mendez, Herschel Watkins, Shenglan Qiao, Kevin S. Raines, Thomas J. Lane, Gundolf Schenk, Garrett Nelson, Ganesh Subramanian, Kensuke Tono, Yasumasa Joti, Makina Yabashi, Daniel Ratner, Sebastian Doniach
Citation: Mendez, D. et al., 2016. Angular correlations of photons from solution diffraction at a free-electron laser encode molecular structure. IUCrJ, 3(6), pp.420-429.
Type: Journal-article
Authors: Alexander Batyuk, Lorenzo Galli, Andrii Ishchenko, Gye Won Han, Cornelius Gati, Petr A. Popov, Ming-Yue Lee, Benjamin Stauch, Thomas A. White, Anton Barty, Andrew Aquila, Mark S. Hunter, Mengning Liang, Sébastien Boutet, Mengchen Pu, Zhi-jie Liu, Garrett Nelson, Daniel James, Chufeng Li, Yun Zhao, John C. H. Spence, Wei Liu, Petra Fromme, Vsevolod Katritch, Uwe Weierstall, Raymond C. Stevens, Vadim Cherezov
Citation: Batyuk, A. et al., 2016. Native phasing of x-ray free-electron laser data for a G protein-coupled receptor. Science Advances, 2(9), pp.e1600292-e1600292.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Nicoleta Herascu, Mark S. Hunter, Golia Shafiei, Mehdi Najafi, T. Wade Johnson, Petra Fromme, Valter Zazubovich
Citation: Herascu, N. et al., 2016. Spectral Hole Burning in Cyanobacterial Photosystem I with P700 in Oxidized and Neutral States. The Journal of Physical Chemistry B, 120(40), pp.10483-10495.
Type: Journal-article
Authors: Andrii Ishchenko, Vadim Cherezov, Wei Liu
Citation: Ishchenko, A., Cherezov, V. & Liu, W., 2016. Preparation and Delivery of Protein Microcrystals in Lipidic Cubic Phase for Serial Femtosecond Crystallography. Journal of Visualized Experiments, (115).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jakub Szlachetko, Joanna Hoszowska, Jean-Claude Dousse, Maarten Nachtegaal, Wojciech Błachucki, Yves Kayser, Jacinto Sà, Marc Messerschmidt, Sebastien Boutet, Garth J. Williams, Christian David, Grigory Smolentsev, Jeroen A. van Bokhoven, Bruce D. Patterson, Thomas J. Penfold, Gregor Knopp, Marek Pajek, Rafael Abela, Christopher J. Milne
Citation: Szlachetko, J. et al., 2016. Establishing nonlinearity thresholds with ultraintense X-ray pulses. Scientific Reports, 6(1).
Type: Journal-article
Authors: Brian Abbey, Ruben A. Dilanian, Connie Darmanin, Rebecca A. Ryan, Corey T. Putkunz, Andrew V. Martin, David Wood, Victor Streltsov, Michael W. M. Jones, Naylyn Gaffney, Felix Hofmann, Garth J. Williams, Sébastien Boutet, Marc Messerschmidt, M. Marvin Seibert, Sophie Williams, Evan Curwood, Eugeniu Balaur, Andrew G. Peele, Keith A. Nugent, Harry M. Quiney
Citation: Abbey, B. et al., 2016. X-ray laser-induced electron dynamics observed by femtosecond diffraction from nanocrystals of Buckminsterfullerene. Science Advances, 2(9), pp.e1601186-e1601186.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Philip J. Robinson, Michael J. Trnka, David A. Bushnell, Ralph E. Davis, Pierre-Jean Mattei, Alma L. Burlingame, Roger D. Kornberg
Citation: Robinson, P.J. et al., 2016. Structure of a Complete Mediator-RNA Polymerase II Pre-Initiation Complex. Cell, 166(6), pp.1411-1422.e16.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Dilano Saldin
Citation: Saldin, D., 2016. Ghost imaging with x rays. Physics, 9.
Type: Journal-article
Authors: Roger Falcone, Michael Dunne, Henry Chapman, Makina Yabashi, Kiyoshi Ueda
Citation: Falcone, R. et al., 2016. Frontiers of free-electron laser science II. Journal of Physics B: Atomic, Molecular and Optical Physics, 49(18), p.180201.
Type: Journal-article
Authors: George D. Calvey, Andrea M. Katz, Chris B. Schaffer, Lois Pollack
Citation: Calvey, G.D. et al., 2016. Mixing injector enables time-resolved crystallography with high hit rate at X-ray free electron lasers. Structural Dynamics, 3(5), p.054301.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Ying Wu, Xiaohong Zhou, Christopher O Barnes, Maria DeLucia, Aina E Cohen, Angela M Gronenborn, Jinwoo Ahn, Guillermo Calero
Citation: Wu, Y. et al., 2016. The DDB1-DCAF1-Vpr-UNG2 crystal structure reveals how HIV-1 Vpr steers human UNG2 toward destruction. Nature Structural & Molecular Biology, 23(10), pp.933-940.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Chin-Yuan Chang, Jeremy R. Lohman, Hongnan Cao, Kemin Tan, Jeffrey D. Rudolf, Ming Ma, Weijun Xu, Craig A. Bingman, Ragothaman M. Yennamalli, Lance Bigelow, Gyorgy Babnigg, Xiaohui Yan, Andrzej Joachimiak, George N. Phillips, Ben Shen
Citation: Chang, C.-Y. et al., 2016. Crystal Structures of SgcE6 and SgcC, the Two-Component Monooxygenase That Catalyzes Hydroxylation of a Carrier Protein-Tethered Substrate during the Biosynthesis of the Enediyne Antitumor Antibiotic C-1027 inStreptomyces globisporus. Biochemistry, 55(36), pp.5142-5154.
Type: Journal-article
Authors: John Spence
Citation: Spence, J., 2016. Electron Crystallography, Charge-Density Mapping and Nanodiffraction. Transmission Electron Microscopy, pp.145-166.
Type: Book-chapter
Authors: Lan Zhu, Uwe Weierstall, Vadim Cherezov, Wei Liu
Citation: Zhu, L. et al., 2016. Serial Femtosecond Crystallography of Membrane Proteins. The Next Generation in Membrane Protein Structure Determination, pp.151-160.
Type: Book-chapter
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Przemyslaw Nogly, Valerie Panneels, Garrett Nelson, Cornelius Gati, Tetsunari Kimura, Christopher Milne, Despina Milathianaki, Minoru Kubo, Wenting Wu, Chelsie Conrad, Jesse Coe, Richard Bean, Yun Zhao, Petra Båth, Robert Dods, Rajiv Harimoorthy, Kenneth R. Beyerlein, Jan Rheinberger, Daniel James, Daniel DePonte, Chufeng Li, Leonardo Sala, Garth J. Williams, Mark S. Hunter, Jason E. Koglin, Peter Berntsen, Eriko Nango, So Iwata, Henry N. Chapman, Petra Fromme, Matthias Frank, Rafael Abela, Sébastien Boutet, Anton Barty, Thomas A. White, Uwe Weierstall, John Spence, Richard Neutze, Gebhard Schertler, Jörg Standfuss
Citation: Nogly, P. et al., 2016. Lipidic cubic phase injector is a viable crystal delivery system for time-resolved serial crystallography. Nature Communications, 7, p.12314.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jeffrey D. Rudolf, Liao-Bin Dong, Hongnan Cao, Catherine Hatzos-Skintges, Jerzy Osipiuk, Michael Endres, Chin-Yuan Chang, Ming Ma, Gyorgy Babnigg, Andrzej Joachimiak, George N. Phillips, Ben Shen
Citation: Rudolf, J.D. et al., 2016. Structure of the ent -Copalyl Diphosphate Synthase PtmT2 from Streptomyces platensis CB00739, a Bacterial Type II Diterpene Synthase . Journal of the American Chemical Society, 138(34), pp.10905-10915.
Type: Journal-article
Authors: Mausumi Mahapatra, Luke Burkholder, Michael Garvey, Yun Bai, Dilano K. Saldin, Wilfred T. Tysoe
Citation: Mahapatra, M. et al., 2016. Enhanced hydrogenation activity and diastereomeric interactions of methyl pyruvate co-adsorbed with R-1-(1-naphthyl)ethylamine on Pd(111). Nature Communications, 7, p.12380.
Type: Journal-article
Authors: Ming Yan, Srinivas Chakravarthy, Joshua M. Tokuda, Lois Pollack, Gregory D. Bowman, Young-Sam Lee
Citation: Yan, M. et al., 2016. Succinyl-5-aminoimidazole-4-carboxamide-1-ribose 5′-Phosphate (SAICAR) Activates Pyruvate Kinase Isoform M2 (PKM2) in Its Dimeric Form. Biochemistry, 55(33), pp.4731-4736.
Type: Journal-article
Authors: Anna Munke, Jakob Andreasson, Andrew Aquila, Salah Awel, Kartik Ayyer, Anton Barty, Richard J. Bean, Peter Berntsen, Johan Bielecki, Sébastien Boutet, Maximilian Bucher, Henry N. Chapman, Benedikt J. Daurer, Hasan DeMirci, Veit Elser, Petra Fromme, Janos Hajdu, Max F. Hantke, Akifumi Higashiura, Brenda G. Hogue, Ahmad Hosseinizadeh, Yoonhee Kim, Richard A. Kirian, Hemanth K.N. Reddy, Ti-Yen Lan, Daniel S.D. Larsson, Haiguang Liu, N. Duane Loh, Filipe R.N.C. Maia, Adrian P. Mancuso, Kerstin Mühlig, Atsushi Nakagawa, Daewoong Nam, Garrett Nelson, Carl Nettelblad, Kenta Okamoto, Abbas Ourmazd, Max Rose, Gijs van der Schot, Peter Schwander, M. Marvin Seibert, Jonas A. Sellberg, Raymond G. Sierra, Changyong Song, Martin Svenda, Nicusor Timneanu, Ivan A. Vartanyants, Daniel Westphal, Max O. Wiedorn, Garth J. Williams, Paulraj Lourdu Xavier, Chun Hong Yoon, James Zook
Citation: Munke, A. et al., 2016. Coherent diffraction of single Rice Dwarf virus particles using hard X-rays at the Linac Coherent Light Source. Scientific Data, 3, p.160064.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Max F. Hantke, Dirk Hasse, Tomas Ekeberg, Katja John, Martin Svenda, Duane Loh, Andrew V. Martin, Nicusor Timneanu, Daniel S.D. Larsson, Gijs van der Schot, Gunilla H. Carlsson, Margareta Ingelman, Jakob Andreasson, Daniel Westphal, Bianca Iwan, Charlotte Uetrecht, Johan Bielecki, Mengning Liang, Francesco Stellato, Daniel P. DePonte, Sadia Bari, Robert Hartmann, Nils Kimmel, Richard A. Kirian, M. Marvin Seibert, Kerstin Mühlig, Sebastian Schorb, Ken Ferguson, Christoph Bostedt, Sebastian Carron, John D. Bozek, Daniel Rolles, Artem Rudenko, Lutz Foucar, Sascha W. Epp, Henry N. Chapman, Anton Barty, Inger Andersson, Janos Hajdu, Filipe R.N.C. Maia
Citation: Hantke, M.F. et al., 2016. A data set from flash X-ray imaging of carboxysomes. Scientific Data, 3, p.160061.
Type: Journal-article
Authors: Tomas Ekeberg, Martin Svenda, M. Marvin Seibert, Chantal Abergel, Filipe R.N.C. Maia, Virginie Seltzer, Daniel P. DePonte, Andrew Aquila, Jakob Andreasson, Bianca Iwan, Olof Jönsson, Daniel Westphal, Duško Odić, Inger Andersson, Anton Barty, Meng Liang, Andrew V. Martin, Lars Gumprecht, Holger Fleckenstein, Saša Bajt, Miriam Barthelmess, Nicola Coppola, Jean-Michel Claverie, N. Duane Loh, Christoph Bostedt, John D. Bozek, Jacek Krzywinski, Marc Messerschmidt, Michael J. Bogan, Christina Y. Hampton, Raymond G. Sierra, Matthias Frank, Robert L. Shoeman, Lukas Lomb, Lutz Foucar, Sascha W. Epp, Daniel Rolles, Artem Rudenko, Robert Hartmann, Andreas Hartmann, Nils Kimmel, Peter Holl, Georg Weidenspointner, Benedikt Rudek, Benjamin Erk, Stephan Kassemeyer, Ilme Schlichting, Lothar Strüder, Joachim Ullrich, Carlo Schmidt, Faton Krasniqi, Günter Hauser, Christian Reich, Heike Soltau, Sebastian Schorb, Helmut Hirsemann, Cornelia Wunderer, Heinz Graafsma, Henry Chapman, Janos Hajdu
Citation: Ekeberg, T. et al., 2016. Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser. Scientific Data, 3, p.160060.
Type: Journal-article
Authors: Gijs van der Schot, Martin Svenda, Filipe R.N.C. Maia, Max F. Hantke, Daniel P. DePonte, M. Marvin Seibert, Andrew Aquila, Joachim Schulz, Richard A. Kirian, Mengning Liang, Francesco Stellato, Sadia Bari, Bianca Iwan, Jakob Andreasson, Nicusor Timneanu, Johan Bielecki, Daniel Westphal, Francisca Nunes de Almeida, Duško Odić, Dirk Hasse, Gunilla H. Carlsson, Daniel S.D. Larsson, Anton Barty, Andrew V. Martin, Sebastian Schorb, Christoph Bostedt, John D. Bozek, Sebastian Carron, Ken Ferguson, Daniel Rolles, Artem Rudenko, Sascha W. Epp, Lutz Foucar, Benedikt Rudek, Benjamin Erk, Robert Hartmann, Nils Kimmel, Peter Holl, Lars Englert, N. Duane Loh, Henry N. Chapman, Inger Andersson, Janos Hajdu, Tomas Ekeberg
Citation: Van der Schot, G. et al., 2016. Open data set of live cyanobacterial cells imaged using an X-ray laser. Scientific Data, 3, p.160058.
Type: Journal-article
Authors: Thomas A. White, Anton Barty, Wei Liu, Andrii Ishchenko, Haitao Zhang, Cornelius Gati, Nadia A. Zatsepin, Shibom Basu, Dominik Oberthür, Markus Metz, Kenneth R. Beyerlein, Chun Hong Yoon, Oleksandr M. Yefanov, Daniel James, Dingjie Wang, Marc Messerschmidt, Jason E. Koglin, Sébastien Boutet, Uwe Weierstall, Vadim Cherezov
Citation: White, T.A. et al., 2016. Serial femtosecond crystallography datasets from G protein-coupled receptors. Scientific Data, 3, p.160057.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Robert M. Lawrence, James D. Zook, Brenda G. Hogue
Citation: Lawrence, R.M., Zook, J.D. & Hogue, B.G., 2016. Full inactivation of alphaviruses in single particle and crystallized forms. Journal of Virological Methods, 236, pp.237-244.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Haiguang Liu, John C. H. Spence
Citation: Liu, H. & Spence, J.C.H., 2016. XFEL data analysis for structural biology. Quantitative Biology, 4(3), pp.159-176.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Hongxing He, Hengrui Fang, Mitchell D. Miller, George N. Phillips, Wu-Pei Su
Citation: He, H. et al., 2016. Improving the efficiency of molecular replacement by utilizing a new iterative transform phasing algorithm. Acta Crystallographica Section A Foundations and Advances, 72(5), pp.539-547.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Tingting Huang, Chin-Yuan Chang, Jeremy R Lohman, Jeffrey D Rudolf, Youngchang Kim, Changsoo Chang, Dong Yang, Ming Ma, Xiaohui Yan, Ivana Crnovcic, Lance Bigelow, Shonda Clancy, Craig A Bingman, Ragothaman M Yennamalli, Gyorgy Babnigg, Andrzej Joachimiak, George N Phillips, Ben Shen
Citation: Huang, T. et al., 2016. Crystal structure of SgcJ, an NTF2-like superfamily protein involved in biosynthesis of the nine-membered enediyne antitumor antibiotic C-1027. The Journal of Antibiotics, 69(10), pp.731-740.
Type: Journal-article
Authors: Aleksander V. Drozdetski, Igor S. Tolokh, Lois Pollack, Nathan Baker, Alexey V. Onufriev
Citation: Drozdetski, A.V. et al., 2016. Opposing Effects of Multivalent Ions on the Flexibility of DNA and RNA. Physical Review Letters, 117(2).
Type: Journal-article
Authors: Heinrich Schwoerer, Henry N Chapman, Bradley J Siwick, R J Dwayne Miller
Citation: Schwoerer, H. et al., 2016. Special issue on imaging the dynamic structure of matter. Journal of Physics B: Atomic, Molecular and Optical Physics, 49(15), p.150201.
Type: Journal-article
Authors: Tyler D. Huber, Fengbin Wang, Shanteri Singh, Brooke R. Johnson, Jianjun Zhang, Manjula Sunkara, Steven G. Van Lanen, Andrew J. Morris, George N. Phillips, Jon S. Thorson
Citation: Huber, T.D. et al., 2016. Functional AdoMet Isosteres Resistant to Classical AdoMet Degradation Pathways. ACS Chemical Biology, 11(9), pp.2484-2491.
Type: Journal-article
Authors: John Spence, Eaton Lattman
Citation: Spence, J. & Lattman, E., 2016. Imaging enzyme kinetics at atomic resolution. IUCrJ, 3(4), pp.228-229.
Type: Journal-article
Authors: Ximeng Y. Dow, Christopher M. Dettmar, Emma L. DeWalt, Justin A. Newman, Alexander R. Dow, Shatabdi Roy-Chowdhury, Jesse D. Coe, Christopher Kupitz, Petra Fromme, Garth J. Simpson
Citation: Dow, X.Y. et al., 2016. Second harmonic generation correlation spectroscopy for characterizing translationally diffusing protein nanocrystals. Acta Crystallographica Section D Structural Biology, 72(7), pp.849-859.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Mahsa Ranji, Mohammad M. Motlagh, Fahimeh Salehpor, Reyhaneh Sepehr, James S. Heisner, Ranjan K. Dash, Amadou K. S. Camara
Citation: Ranji, M. et al., 2016. Optical Cryoimaging Reveals a Heterogeneous Distribution of Mitochondrial Redox State in ex vivo Guinea Pig Hearts and its Alteration during Ischemia and Reperfusion. IEEE Journal of Translational Engineering in Health and Medicine, pp.1-1.
Type: Journal-article
Authors: Hung T. Nguyen, Suzette A. Pabit, Lois Pollack, David A. Case
Citation: Nguyen, H.T. et al., 2016. Extracting water and ion distributions from solution x-ray scattering experiments. The Journal of Chemical Physics, 144(21), p.214105.
Type: Journal-article
Authors: Mian Yang, Randall Nelson, Alexandra Ros
Citation: Yang, M., Nelson, R. & Ros, A., 2016. Toward Analysis of Proteins in Single Cells: A Quantitative Approach Employing Isobaric Tags with MALDI Mass Spectrometry Realized with a Microfluidic Platform. Analytical Chemistry, 88(13), pp.6672-6679.
Type: Journal-article
Authors: Che-Hsiung Hsu, Sangho Park, David E. Mortenson, B. Lachele Foley, Xiaocong Wang, Robert J. Woods, David A. Case, Evan T. Powers, Chi-Huey Wong, H. Jane Dyson, Jeffery W. Kelly
Citation: Hsu, C.-H. et al., 2016. The Dependence of Carbohydrate-Aromatic Interaction Strengths on the Structure of the Carbohydrate. Journal of the American Chemical Society, 138(24), pp.7636-7648.
Type: Journal-article
Authors: Suzette A. Pabit, Andrea M. Katz, Igor S. Tolokh, Aleksander Drozdetski, Nathan Baker, Alexey V. Onufriev, Lois Pollack
Citation: Pabit, S.A. et al., 2016. Understanding nucleic acid structural changes by comparing wide-angle x-ray scattering (WAXS) experiments to molecular dynamics simulations. The Journal of Chemical Physics, 144(20), p.205102.
Type: Journal-article
Authors: Valerio Mariani, Andrew Morgan, Chun Hong Yoon, Thomas J. Lane, Thomas A. White, Christopher O'Grady, Manuela Kuhn, Steve Aplin, Jason Koglin, Anton Barty, Henry N. Chapman
Citation: Mariani, V. et al., 2016. OnDA: online data analysis and feedback for serial X-ray imaging. Journal of Applied Crystallography, 49(3), pp.1073-1080.
Type: Journal-article
Authors: Claudiu A. Stan, Despina Milathianaki, Hartawan Laksmono, Raymond G. Sierra, Trevor A. McQueen, Marc Messerschmidt, Garth J. Williams, Jason E. Koglin, Thomas J. Lane, Matt J. Hayes, Serge A. H. Guillet, Mengning Liang, Andrew L. Aquila, Philip R. Willmott, Joseph S. Robinson, Karl L. Gumerlock, Sabine Botha, Karol Nass, Ilme Schlichting, Robert L. Shoeman, Howard A. Stone, Sébastien Boutet
Citation: Stan, C.A. et al., 2016. Liquid explosions induced by X-ray laser pulses. Nature Physics, 12(10), pp.966-971.
Type: Journal-article
Authors: J. M. Berg, N. Bhalla, P. E. Bourne, M. Chalfie, D. G. Drubin, J. S. Fraser, C. W. Greider, M. Hendricks, C. Jones, R. Kiley, S. King, M. W. Kirschner, H. M. Krumholz, R. Lehmann, M. Leptin, B. Pulverer, B. Rosenzweig, J. E. Spiro, M. Stebbins, C. Strasser, S. Swaminathan, P. Turner, R. D. Vale, K. VijayRaghavan, C. Wolberger
Citation: Berg, J.M. et al., 2016. Preprints for the life sciences. Science, 352(6288), pp.899-901.
Type: Journal-article
Authors: A. V. Mishin, A. P. Luginina, A. P. Potapenko, V. I. Borshchevskiy, V. Katritch, E. Edelweiss, I. S. Okhrimenko, V. I. Gordeliy, V. G. Cherezov
Citation: Mishin, A.V. et al., 2016. Expression and purification of an engineered human endothelin receptor B in a monomeric form. Doklady Biochemistry and Biophysics, 467(1), pp.157-161.
Type: Journal-article
Authors: Garrett Nelson, Richard A. Kirian, Uwe Weierstall, Nadia A. Zatsepin, Tomáš Faragó, Tilo Baumbach, Fabian Wilde, Fabian B. P. Niesler, Benjamin Zimmer, Izumi Ishigami, Masahide Hikita, Saša Bajt, Syun-Ru Yeh, Denis L. Rousseau, Henry N. Chapman, John C. H. Spence, Michael Heymann
Citation: Nelson, G. et al., 2016. Three-dimensional-printed gas dynamic virtual nozzles for x-ray laser sample delivery. Optics Express, 24(11), p.11515.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Richard A. Kirian, Henry N. Chapman
Citation: Kirian, R.A. & Chapman, H.N., 2016. Imaging of Objects by Coherent Diffraction of X-Ray Free-Electron Laser Pulses. Synchrotron Light Sources and Free-Electron Lasers, pp.1135-1195.
Type: Book-chapter
Authors: Katerina Dörner, Jose M. Martin-Garcia, Christopher Kupitz, Zhen Gong, T. Conn Mallet, Liqing Chen, Rebekka M. Wachter, Petra Fromme
Citation: Dörner, K. et al., 2016. Characterization of Protein Nanocrystals Based on the Reversibility of Crystallization. Crystal Growth & Design, 16(7), pp.3838-3845.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: K. Pande, C. D. M. Hutchison, G. Groenhof, A. Aquila, J. S. Robinson, J. Tenboer, S. Basu, S. Boutet, D. P. DePonte, M. Liang, T. A. White, N. A. Zatsepin, O. Yefanov, D. Morozov, D. Oberthuer, C. Gati, G. Subramanian, D. James, Y. Zhao, J. Koralek, J. Brayshaw, C. Kupitz, C. Conrad, S. Roy-Chowdhury, J. D. Coe, M. Metz, P. L. Xavier, T. D. Grant, J. E. Koglin, G. Ketawala, R. Fromme, V.  rajer, R. Henning, J. C. H. Spence, A. Ourmazd, P. Schwander, U. Weierstall, M. Frank, P. Fromme, A. Barty, H. N. Chapman, K. Moffat, J. J. van Thor, M. Schmidt
Citation: Pande, K. et al., 2016. Femtosecond structural dynamics drives the trans/cis isomerization in photoactive yellow protein. Science, 352(6286), pp.725-729.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jinghui Luo, Katherine A. Muratore, Edgar A. Arriaga, Alexandra Ros
Citation: Luo, J. et al., 2016. Deterministic Absolute Negative Mobility for Micro- and Submicrometer Particles Induced in a Microfluidic Device. Analytical Chemistry, 88(11), pp.5920-5927.
Type: Journal-article
Authors: Jose M. Martin-Garcia, Chelsie E. Conrad, Jesse Coe, Shatabdi Roy-Chowdhury, Petra Fromme
Citation: Martin-Garcia, J.M. et al., 2016. Serial femtosecond crystallography: A revolution in structural biology. Archives of Biochemistry and Biophysics, 602, pp.32-47.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Christopher D.M. Hutchison, Marius Kaucikas, Jason Tenboer, Christopher Kupitz, Keith Moffat, Marius Schmidt, Jasper J. van Thor
Citation: Hutchison, C.D.M. et al., 2016. Photocycle populations with femtosecond excitation of crystalline photoactive yellow protein. Chemical Physics Letters, 654, pp.63-71.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Hongnan Cao, Kemin Tan, Fengbin Wang, Lance Bigelow, Ragothaman M. Yennamalli, Robert Jedrzejczak, Gyorgy Babnigg, Craig A. Bingman, Andrzej Joachimiak, Madan K. Kharel, Shanteri Singh, Jon S. Thorson, George N. Phillips
Citation: Cao, H. et al., 2016. Structural dynamics of a methionine γ-lyase for calicheamicin biosynthesis: Rotation of the conserved tyrosine stacking with pyridoxal phosphate. Structural Dynamics, 3(3), p.034702.
Type: Journal-article
Authors: Ray Yu-Ruei Wang, Yifan Song, Benjamin Barad, Yifan Cheng, James Fraser, Frank DiMaio
Citation: Wang, R.Y.-R. et al., 2016. Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: R. Fung, A. Ourmazd, A. M. Hanna, O. Vendrell, S. Ramakrishna, T. Seideman, R. Santra, A. Ourmazd
Citation: Fung, R. et al., 2016. Dynamics from noisy data with extreme timing uncertainty. Nature, 532(7600), pp.471-475.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Hilary P. Stevenson, Guowu Lin, Christopher O. Barnes, Ieva Sutkeviciute, Troy Krzysiak, Simon C. Weiss, Shelley Reynolds, Ying Wu, Veeranagu Nagarajan, Alexander M. Makhov, Robert Lawrence, Emily Lamm, Lisa Clark, Timothy J. Gardella, Brenda G. Hogue, Craig M. Ogata, Jinwoo Ahn, Angela M. Gronenborn, James F. Conway, Jean-Pierre Vilardaga, Aina E. Cohen, Guillermo Calero
Citation: Stevenson, H.P. et al., 2016. Transmission electron microscopy for the evaluation and optimization of crystal growth. Acta Crystallographica Section D Structural Biology, 72(5), pp.603-615.
Type: Journal-article
Authors: David Mavor, Kyle Barlow, Samuel Thompson, Benjamin A Barad, Alain R Bonny, Clinton L Cario, Garrett Gaskins, Zairan Liu, Laura Deming, Seth D Axen, Elena Caceres, Weilin Chen, Adolfo Cuesta, Rachel E Gate, Evan M Green, Kaitlin R Hulce, Weiyue Ji, Lillian R Kenner, Bruk Mensa, Leanna S Morinishi, Steven M Moss, Marco Mravic, Ryan K Muir, Stefan Niekamp, Chimno I Nnadi, Eugene Palovcak, Erin M Poss, Tyler D Ross, Eugenia C Salcedo, Stephanie K See, Meena Subramaniam, Allison W Wong, Jennifer Li, Kurt S Thorn, Shane Ó Conchúir, Benjamin P Roscoe, Eric D Chow, Joseph L DeRisi, Tanja Kortemme, Daniel N Bolon, James S Fraser
Citation: Mavor, D. et al., 2016. Determination of ubiquitin fitness landscapes under different chemical stresses in a classroom setting. eLife, 5.
Type: Journal-article
Authors: Igor S. Tolokh, Aleksander V. Drozdetski, Lois Pollack, Nathan A. Baker, Alexey V. Onufriev
Citation: Tolokh, I.S. et al., 2016. Multi-shell model of ion-induced nucleic acid condensation. The Journal of Chemical Physics, 144(15), p.155101.
Type: Journal-article
Authors: Yujie Chen, Lois Pollack
Citation: Chen, Y. & Pollack, L., 2016. SAXS studies of RNA: structures, dynamics, and interactions with partners. WIREs RNA.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: X. Edward Zhou, Xiang Gao, Anton Barty, Yanyong Kang, Yuanzheng He, Wei Liu, Andrii Ishchenko, Thomas A. White, Oleksandr Yefanov, Gye Won Han, Qingping Xu, Parker W. de Waal, Kelly M. Suino-Powell, Sébastien Boutet, Garth J. Williams, Meitian Wang, Dianfan Li, Martin Caffrey, Henry N. Chapman, John C.H. Spence, Petra Fromme, Uwe Weierstall, Raymond C. Stevens, Vadim Cherezov, Karsten Melcher, H. Eric Xu
Citation: Zhou, X.E. et al., 2016. X-ray laser diffraction for structure determination of the rhodopsin-arrestin complex. Sci. Data, 3, p.160021.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Maia Azubel, Roger D. Kornberg
Citation: Azubel, M. & Kornberg, R.D., 2016. Synthesis of Water-Soluble, Thiolate-Protected Gold Nanoparticles Uniform in Size. Nano Letters, 16(5), pp.3348-3351.
Type: Journal-article
Authors: Joshua M. Tokuda, Suzette A. Pabit, Lois Pollack
Citation: Tokuda, J.M., Pabit, S.A. & Pollack, L., 2016. Protein-DNA and ion-DNA interactions revealed through contrast variation SAXS. Biophysical Reviews, 8(2), pp.139-149.
Type: Journal-article
Authors: Shannon J. Clough, Anthony J. Hutchinson, Margarita L. Dubocovich
Citation: Clough, S.J., Hutchinson, A.J. & Dubocovich, M.L., 2016. Melatonin Receptors as Modulators of Methamphetamine-Mediated Behaviors. Neuropathology of Drug Addictions and Substance Misuse, pp.169-180.
Type: Book-chapter
Authors: Thomas A. White, Valerio Mariani, Wolfgang Brehm, Oleksandr Yefanov, Anton Barty, Kenneth R. Beyerlein, Fedor Chervinskii, Lorenzo Galli, Cornelius Gati, Takanori Nakane, Alexandra Tolstikova, Keitaro Yamashita, Chun Hong Yoon, Kay Diederichs, Henry N. Chapman
Citation: White, T.A. et al., 2016. Recent developments in CrystFEL . J Appl Crystallogr, 49(2), pp.680-689.
Type: Journal-article
Authors: Andrew H. Van Benschoten, Lin Liu, Ana Gonzalez, Aaron S. Brewster, Nicholas K. Sauter, James S. Fraser, Michael E. Wall
Citation: Van Benschoten, A.H. et al., 2016. Measuring and modeling diffuse scattering in protein X-ray crystallography. Proceedings of the National Academy of Sciences, 113(15), pp.4069-4074.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Matthew A. Coleman, Jenny A. Cappuccio, Craig D. Blanchette, Tingjuan Gao, Erin S. Arroyo, Angela K. Hinz, Feliza A. Bourguet, Brent Segelke, Paul D. Hoeprich, Thomas Huser, Ted A. Laurence, Vladimir L. Motin, Brett A. Chromy
Citation: Coleman, M.A. et al., 2016. Expression and Association of the Yersinia pestis Translocon Proteins, YopB and YopD, Are Facilitated by Nanolipoprotein Particles M. Skurnik, ed. PLoS ONE, 11(3), p.e0150166.
Type: Journal-article
Authors: Sarah A. Kessans, Mark D. Linhart, Lydia R. Meador, Jacquelyn Kilbourne, Brenda G. Hogue, Petra Fromme, Nobuyuki Matoba, Tsafrir S. Mor
Citation: Kessans, S.A. et al., 2016. Immunological Characterization of Plant-Based HIV-1 Gag/Dgp41 Virus-Like Particles M. L. Alvarez, ed. PLoS ONE, 11(3), p.e0151842.
Type: Journal-article
Authors: Salah Awel, Richard A. Kirian, Niko Eckerskorn, Max Wiedorn, Daniel A. Horke, Andrei V. Rode, Jochen Küpper, Henry N. Chapman
Citation: Awel, S. et al., 2016. Visualizing aerosol-particle injection for diffractive-imaging experiments. Optics Express, 24(6), p.6507.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Matthias Fuchs
Citation: Fuchs, M., 2016. Anomalous Nonlinear X-ray Compton Scattering. High-Brightness Sources and Light-Driven Interactions.
Type: Proceedings-article
Authors: Peter A. Meyer, Stephanie Socias, Jason Key, Elizabeth Ransey, Emily C. Tjon, Alejandro Buschiazzo, Ming Lei, Chris Botka, James Withrow, David Neau, Kanagalaghatta Rajashankar, Karen S. Anderson, Richard H. Baxter, Stephen C. Blacklow, Titus J. Boggon, Alexandre M. J. J. Bonvin, Dominika Borek, Tom J. Brett, Amedeo Caflisch, Chung-I Chang, Walter J. Chazin, Kevin D. Corbett, Michael S. Cosgrove, Sean Crosson, Sirano Dhe-Paganon, Enrico Di Cera, Catherine L. Drennan, Michael J. Eck, Brandt F. Eichman, Qing R. Fan, Adrian R. Ferré-D'Amaré, J. Christopher Fromme, K. Christopher Garcia, Rachelle Gaudet, Peng Gong, Stephen C. Harrison, Ekaterina E. Heldwein, Zongchao Jia, Robert J. Keenan, Andrew C. Kruse, Marc Kvansakul, Jason S. McLellan, Yorgo Modis, Yunsun Nam, Zbyszek Otwinowski, Emil F. Pai, Pedro José Barbosa Pereira, Carlo Petosa, C. S. Raman, Tom A. Rapoport, Antonina Roll-Mecak, Michael K. Rosen, Gabby Rudenko, Joseph Schlessinger, Thomas U. Schwartz, Yousif Shamoo, Holger Sondermann, Yizhi J. Tao, Niraj H. Tolia, Oleg V. Tsodikov, Kenneth D. Westover, Hao Wu, Ian Foster, James S. Fraser, Filipe R. N C. Maia, Tamir Gonen, Tom Kirchhausen, Kay Diederichs, Mercè Crosas, Piotr Sliz
Citation: Meyer, P.A. et al., 2016. Data publication with the structural biology data grid supports live analysis. Nature Communications, 7, p.10882.
Type: Journal-article
Authors: Christopher O. Barnes, Elena G. Kovaleva, Xiaofeng Fu, Hilary P. Stevenson, Aaron S. Brewster, Daniel P. DePonte, Elizabeth L. Baxter, Aina E. Cohen, Guillermo Calero
Citation: Barnes, C.O. et al., 2016. Assessment of microcrystal quality by transmission electron microscopy for efficient serial femtosecond crystallography. Archives of Biochemistry and Biophysics, 602, pp.61-68.
Type: Journal-article
Authors: F.X. Kärtner, F. Ahr, A.-L. Calendron, H. Çankaya, S. Carbajo, G. Chang, G. Cirmi, K. Dörner, U. Dorda, A. Fallahi, A. Hartin, M. Hemmer, R. Hobbs, Y. Hua, W.R. Huang, R. Letrun, N. Matlis, V. Mazalova, O.D. Mücke, E. Nanni, W. Putnam, K. Ravi, F. Reichert, I. Sarrou, X. Wu, A. Yahaghi, H. Ye, L. Zapata, D. Zhang, C. Zhou, R.J.D. Miller, K.K. Berggren, H. Graafsma, A. Meents, R.W. Assmann, H.N. Chapman, P. Fromme
Citation: Kärtner, F.X. et al., 2016. AXSIS: Exploring the frontiers in attosecond X-ray science, imaging and spectroscopy. Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, 829, pp.24-29.
Type: Journal-article
Authors: Bahige G. Abdallah, Shatabdi Roy-Chowdhury, Raimund Fromme, Petra Fromme, Alexandra Ros
Citation: Abdallah, B.G. et al., 2016. Protein Crystallization in an Actuated Microfluidic Nanowell Device. Crystal Growth & Design.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Debra T. Hansen, Mark D. Robida, Felicia M. Craciunescu, Andrey V. Loskutov, Katerina Dörner, John-Charles Rodenberry, Xiao Wang, Tien L. Olson, Hetal Patel, Petra Fromme, Kathryn F. Sykes
Citation: Hansen, D.T. et al., 2016. Polyclonal Antibody Production for Membrane Proteins via Genetic Immunization. Scientific Reports, 6, p.21925.
Type: Journal-article
Authors: M. Uddin
Citation: Uddin, M., 2016. Reconstructing three-dimensional helical structure with an X-ray free electron laser. Journal of Applied Crystallography, 49(2), pp.450-456.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Lu Han, Shanteri Singh, Jon S. Thorson, George N. Phillips
Citation: Han, L. et al., 2016. Loop dynamics of thymidine diphosphate-rhamnose 3′-O-methyltransferase (CalS11), an enzyme in calicheamicin biosynthesis. Structural Dynamics, 3(1), p.012004.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Ming-Yue Lee, Nilkanth Patel, Vsevolod Katritch, Raymond C. Stevens, Vadim Cherezov
Citation: Lee, M.-Y. et al., 2016. Structural Studies of the Human Kappa Opioid Receptor Active State Conformations. Biophysical Journal, 110(3), p.38a-39a.
Type: Journal-article
Authors: Premila P. Samuel, William Ou, George N. Phillips, John S. Olson
Citation: Samuel, P.P. et al., 2016. An in Vitro Investigation of Globin Folding and Expression. Biophysical Journal, 110(3), p.209a-210a.
Type: Journal-article
Authors: Andrii Ishchenko, Vadim Cherezov, Wei Liu
Citation: Ishchenko, A., Cherezov, V. & Liu, W., 2016. Preparation and Delivery of Microcrystals in Lipidic Cubic Phase for Serial Femtosecond Crystallography. Biophysical Journal, 110(3), p.59a.
Type: Journal-article
Authors: Joachim Frank, Abbas Ourmazd
Citation: Frank, J. & Ourmazd, A., 2016. Continuous Changes in Structure Mapped by Manifold Embedding of Single-Particle Data in Cryo-EM. Methods.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Kartik Ayyer, Oleksandr M. Yefanov, Dominik Oberthür, Shatabdi Roy-Chowdhury, Lorenzo Galli, Valerio Mariani, Shibom Basu, Jesse Coe, Chelsie E. Conrad, Raimund Fromme, Alexander Schaffer, Katerina Dörner, Daniel James, Christopher Kupitz, Markus Metz, Garrett Nelson, Paulraj Lourdu Xavier, Kenneth R. Beyerlein, Marius Schmidt, Iosifina Sarrou, John C. H. Spence, Uwe Weierstall, Thomas A. White, Jay-How Yang, Yun Zhao, Mengning Liang, Andrew Aquila, Mark S. Hunter, Joseph S. Robinson, Jason E. Koglin, Sébastien Boutet, Petra Fromme, Anton Barty, Henry N. Chapman
Citation: Ayyer, K. et al., 2016. Macromolecular diffractive imaging using imperfect crystals. Nature, 530(7589), pp.202-206.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jie Ding, Robert M. Lawrence, Paul V. Jones, Brenda G. Hogue, Mark A. Hayes
Citation: Ding, J. et al., 2016. Concentration of Sindbis virus with optimized gradient insulator-based dielectrophoresis. Analyst.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Peter Cimermancic, Patrick Weinkam, T. Justin Rettenmaier, Leon Bichmann, Daniel A. Keedy, Rahel A. Woldeyes, Dina Schneidman-Duhovny, Omar N. Demerdash, Julie C. Mitchell, James A. Wells, James S. Fraser, Andrej Sali
Citation: Cimermancic, P. et al., 2016. CryptoSite: Expanding the Druggable Proteome by Characterization and Prediction of Cryptic Binding Sites. Journal of Molecular Biology, 428(4), pp.709-719.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Ken R. Ferguson, Maximilian Bucher, Tais Gorkhover, Sébastien Boutet, Hironobu Fukuzawa, Jason E. Koglin, Yoshiaki Kumagai, Alberto Lutman, Agostino Marinelli, Marc Messerschmidt, Kiyonobu Nagaya, Jim Turner, Kiyoshi Ueda, Garth J. Williams, Philip H. Bucksbaum, Christoph Bostedt
Citation: Ferguson, K.R. et al., 2016. Transient lattice contraction in the solid-to-plasma transition. Science Advances, 2(1), pp.e1500837-e1500837.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Saša Bajt, Mauro Prasciolu, Andrew J. Morgan, Henry N. Chapman, Jacek Krzywinski, Andrzej Andrejczuk
Citation: Bajt, S. et al., 2016. One dimensional focusing with high numerical aperture multilayer Laue lens.
Type: Proceedings-article
Authors: Richard A. Kirian, Henry N. Chapman
Citation: Kirian, R.A. & Chapman, H.N., 2015. Imaging of Objects by Coherent Diffraction of X-Ray Free-Electron Laser Pulses. Synchrotron Light Sources and Free-Electron Lasers, pp.1-55.
Type: Book-chapter
Authors: Tais Gorkhover, Sebastian Schorb, Ryan Coffee, Marcus Adolph, Lutz Foucar, Daniela Rupp, Andrew Aquila, John D. Bozek, Sascha W. Epp, Benjamin Erk, Lars Gumprecht, Lotte Holmegaard, Andreas Hartmann, Robert Hartmann, Günter Hauser, Peter Holl, Andre Hömke, Per Johnsson, Nils Kimmel, Kai-Uwe Kühnel, Marc Messerschmidt, Christian Reich, Arnaud Rouzée, Benedikt Rudek, Carlo Schmidt, Joachim Schulz, Heike Soltau, Stephan Stern, Georg Weidenspointner, Bill White, Jochen Küpper, Lothar Strüder, Ilme Schlichting, Joachim Ullrich, Daniel Rolles, Artem Rudenko, Thomas Möller, Christoph Bostedt
Citation: Gorkhover, T. et al., 2016. Femtosecond and nanometre visualization of structural dynamics in superheated nanoparticles. Nature Photon, 10(2), pp.93-97.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Katherine M. Evely, Randall L. Hudson, Margarita L. Dubocovich, Samir Haj-dahmane
Citation: Evely, K.M. et al., 2016. Melatonin receptor activation increases glutamatergic synaptic transmission in the rat medial lateral habenula. Synapse, 70(5), pp.181-186.
Type: Journal-article
Authors: Jesse Coe, Petra Fromme
Citation: Coe, J. & Fromme, P., 2016. Serial femtosecond crystallography opens new avenues for Structural Biology. PPL, 23(3), pp.255-272.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Maria L. Sushko, Dennis G. Thomas, Suzette A. Pabit, Lois Pollack, Alexey V. Onufriev, Nathan A. Baker
Citation: Sushko, M.L. et al., 2016. The Role of Correlation and Solvation in Ion Interactions with B-DNA. Biophysical Journal, 110(2), pp.315-326.
Type: Journal-article
Authors: Arjen J. Jakobi, Daniel M. Passon, Kèvin Knoops, Francesco Stellato, Mengning Liang, Thomas A. White, Thomas Seine, Marc Messerschmidt, Henry N. Chapman, Matthias Wilmanns
Citation: Jakobi, A.J. et al., 2016. In cellulo serial crystallography of alcohol oxidase crystals inside yeast cells . IUCrJ, 3(2).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Irem Altan, Patrick Charbonneau, Edward H. Snell
Citation: Altan, I., Charbonneau, P. & Snell, E.H., 2016. Computational crystallization. Archives of Biochemistry and Biophysics.
Type: Journal-article
Authors: Leonard M. G. Chavas, Sasa Bajt, Lars Gumprecht, Henry N. Chapman
Citation: Chavas, L.M.G. et al., 2015. Serial femtosecond crystallography on in vivo grown crystals at SACLA - developments and results . Acta Cryst Sect A Found Adv, 71(a1), pp.s148-s148.
Type: Journal-article
Authors: Diana C. F. Monteiro, Vijay Patel, Christopher P. Bartlett, Shingo Nozaki, Thomas D. Grant, James A. Gowdy, Gary S. Thompson, Arnout P. Kalverda, Edward H. Snell, Hironori Niki, Arwen R. Pearson, Michael E. Webb
Citation: Monteiro, D.C.F. et al., 2015. Towards a generalised approach for the time-resolved crystallographic study of enzymes. Acta Cryst Sect A Found Adv, 71(a1), pp.s25-s25.
Type: Journal-article
Authors: Joe P. J. Chen, Rick A. Kirian, Richard J. Bean, Kenneth R. Beyerlein, Miriam Barthelmess, Chun Hong Yoon, Fenglin Wang, Flavio Capotondi, Emanuele Pedersoli, Anton Barty, Henry N. Chapman, Philip J. Bones, Romain D. Arnal, Rick P. Millane, John C. H. Spence
Citation: Chen, J.P.J. et al., 2015. Phase retrieval for randomly terminated finite crystals. Acta Cryst Sect A Found Adv, 71(a1), pp.s17-s17.
Type: Journal-article
Authors: Kartik Ayyer, Oleksandr M. Yefanov, Dominik Oberthuer, Shatabdi Chowdhury, Lorenzo Galli, Valerio Mariani, Shibom Basu, Jesse Coe, Chelsie E. Conrad, Raimund Fromme, Katerina Doerner, Matthias Frank, Daniel James, Christopher Kupitz, Markus Metz, Garrett Nelson, Xavier L. Paulraj, Kenneth Beyerlein, Marius Schmidt, Iosifina Sarrou, John C. H. Spence, Uwe Weierstall, Thomas A. White, Jayhow Yang, Nadia A. Zatsepin, Yun Zhao, Mengning Liang, Andrew Aquila, Mark S. Hunter, Joseph S. Robinson, Jason E. Koglin, Sébastien Boutet, Petra Fromme, Anton Barty, Henry N. Chapman
Citation: Ayyer, K. et al., 2015. Improving resolution in serial crystallography. Acta Cryst Sect A Found Adv, 71(a1), pp.s16-s16.
Type: Journal-article
Authors: Thomas R. Schneider, Gleb Bourenkov, Cornelius Gati, Henry N. Chapman, Lars Redecke, Ulrich Zander, José A. Marquez, Florent Cipriani, Thomas R. Schneider
Citation: Schneider, T.R. et al., 2015. Serial synchrotron crystallography experiments at EMBL beamline P14 at PETRA III. Acta Cryst Sect A Found Adv, 71(a1), pp.s12-s12.
Type: Journal-article
Authors: Dianfan Li, Phillip J. Stansfeld, Mark S. P. Sansom, Aaron Keogh, Lutz Vogeley, Nicole Howe, Joseph A. Lyons, David Aragao, Petra Fromme, Raimund Fromme, Shibom Basu, Ingo Grotjohann, Christopher Kupitz, Kimberley Rendek, Uwe Weierstall, Nadia A. Zatsepin, Vadim Cherezov, Wei Liu, Sateesh Bandaru, Niall J. English, Cornelius Gati, Anton Barty, Oleksandr Yefanov, Henry N. Chapman, Kay Diederichs, Marc Messerschmidt, Sébastien Boutet, Garth J. Williams, M. Marvin Seibert, Martin Caffrey
Citation: Li, D. et al., 2015. Ternary structure reveals mechanism of a membrane diacylglycerol kinase. Nat Comms, 6, p.10140.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Julie L. Sutton, Lois Pollack
Citation: Sutton, J.L. & Pollack, L., 2015. Tuning RNA Flexibility with Helix Length and Junction Sequence. Biophysical Journal, 109(12), pp.2644-2653.
Type: Journal-article
Authors: Niko Eckerskorn, Richard Bowman, Richard A. Kirian, Salah Awel, Max Wiedorn, Jochen Küpper, Miles J. Padgett, Henry N. Chapman, Andrei V. Rode
Citation: Eckerskorn, N. et al., 2015. Optically Induced Forces Imposed in an Optical Funnel on a Stream of Particles in Air or Vacuum. Physical Review Applied, 4(6).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Marius Schmidt
Citation: Schmidt, M., 2015. Time-Resolved Crystallography at X-ray Free Electron Lasers and Synchrotron Light Sources. Synchrotron Radiation News, 28(6), pp.25-30.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: K. R. Beyerlein, L. Adriano, M. Heymann, R. Kirian, J. Knoška, F. Wilde, H. N. Chapman, S. Bajt
Citation: Beyerlein, K.R. et al., 2015. Ceramic micro-injection molded nozzles for serial femtosecond crystallography sample delivery. Review of Scientific Instruments, 86(12), p.125104.
Type: Journal-article
Authors: Andrew H Van Benschoten, Lin Liu, Ana Gonzalez, Aaron S Brewster, Nicholas K Sauter, James S Fraser, Michael Wall
Citation: Van Benschoten, A.H. et al., 2015. Measuring and modeling diffuse scattering in protein X-ray crystallography.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Alexander Heifetz, Ewa I. Chudyk, Laura Gleave, Matteo Aldeghi, Vadim Cherezov, Dmitri G. Fedorov, Philip C. Biggin, Mike J. Bodkin
Citation: Heifetz, A. et al., 2016. The Fragment Molecular Orbital Method Reveals New Insight into the Chemical Nature of GPCR-Ligand Interactions. Journal of Chemical Information and Modeling, 56(1), pp.159-172.
Type: Journal-article
Authors: Kate E. Helmich, Jose Henrique Pereira, Daniel L. Gall, Richard A. Heins, Ryan P. McAndrew, Craig Bingman, Kai Deng, Keefe C. Holland, Daniel R. Noguera, Blake A. Simmons, Kenneth L. Sale, John Ralph, Timothy J. Donohue, Paul D. Adams, George N. Phillips
Citation: Helmich, K.E. et al., 2015. Structural Basis of Stereospecificity in the Bacterial Enzymatic Cleavage of β-Aryl Ether Bonds in Lignin. J. Biol. Chem., 291(10), pp.5234-5246.
Type: Journal-article
Authors: Elizabeth L. Baxter, Laura Aguila, Roberto Alonso-Mori, Christopher O. Barnes, Christopher A. Bonagura, Winnie Brehmer, Axel T. Brunger, Guillermo Calero, Tom T. Caradoc-Davies, Ruchira Chatterjee, William F. Degrado, James S. Fraser, Mohamed Ibrahim, Jan Kern, Brian K. Kobilka, Andrew C. Kruse, Karl M. Larsson, Heinrik T. Lemke, Artem Y. Lyubimov, Aashish Manglik, Scott E. McPhillips, Erik Norgren, Siew S. Pang, S. M. Soltis, Jinhu Song, Jessica Thomaston, Yingssu Tsai, William I. Weis, Rahel A. Woldeyes, Vittal Yachandra, Junko Yano, Athina Zouni, Aina E. Cohen
Citation: Baxter, E.L. et al., 2016. High-density grids for efficient data collection from multiple crystals. Acta Crystallogr Sect D Struct Biol, 72(1), pp.2-11.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Raymond G Sierra, Cornelius Gati, Hartawan Laksmono, E Han Dao, Sheraz Gul, Franklin Fuller, Jan Kern, Ruchira Chatterjee, Mohamed Ibrahim, Aaron S Brewster, Iris D Young, Tara Michels-Clark, Andrew Aquila, Mengning Liang, Mark S Hunter, Jason E Koglin, Sébastien Boutet, Elia A Junco, Brandon Hayes, Michael J Bogan, Christina Y Hampton, Elisabetta V Puglisi, Nicholas K Sauter, Claudiu A Stan, Athina Zouni, Junko Yano, Vittal K Yachandra, S Michael Soltis, Joseph D Puglisi, Hasan DeMirci
Citation: Sierra, R.G. et al., 2015. Concentric-flow electrokinetic injector enables serial crystallography of ribosome and photosystem II. Nat Meth.
Type: Journal-article
Authors: Petra Fromme
Citation: Fromme, P., 2015. XFELs open a new era in structural chemical biology. Nat Chem Biol, 11(12), pp.895-899.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Lin Gan, Fernanda Camacho-Alanis, Alexandra Ros
Citation: Gan, L., Camacho-Alanis, F. & Ros, A., 2015. Polarizability of Six-Helix Bundle and Triangle DNA Origami and Their Escape Characteristics from a Dielectrophoretic Trap. Anal. Chem., 87(24), pp.12059-12064.
Type: Journal-article
Authors: Kyle P. Eagen, Tom A. Hartl, Roger D. Kornberg
Citation: Eagen, K.P., Hartl, T.A. & Kornberg, R.D., 2015. Stable Chromosome Condensation Revealed by Chromosome Conformation Capture. Cell, 163(4), pp.934-946.
Type: Journal-article
Authors: Yahli Lorch, Roger D. Kornberg
Citation: Lorch, Y. & Kornberg, R.D., 2015. Chromatin-remodeling and the initiation of transcription. Quarterly Reviews of Biophysics, 48(04), pp.465-470.
Type: Journal-article
Authors: Rebecca L. Miller, Aaron A. Thompson, Claudio Trapella, Remo Guerrini, Davide Malfacini, Nilkanth Patel, Gye Won Han, Vadim Cherezov, Girolamo Caló, Vsevolod Katritch, Raymond C. Stevens
Citation: Miller, R.L. et al., 2015. The Importance of Ligand-Receptor Conformational Pairs in Stabilization: Spotlight on the N/OFQ G Protein-Coupled Receptor. Structure, 23(12), pp.2291-2299.
Type: Journal-article
Authors: Jessica L. Thomaston, Mercedes Alfonso-Prieto, Rahel A. Woldeyes, James S. Fraser, Michael L. Klein, Giacomo Fiorin, William F. DeGrado
Citation: Thomaston, J.L. et al., 2015. High-resolution structures of the M2 channel from influenza A virus reveal dynamic pathways for proton stabilization and transduction. Proc Natl Acad Sci USA, 112(46), pp.14260-14265.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Andrey Bogorodskiy, Fedor Frolov, Alexey Mishin, Ekaterina Round, Vitaly Polovinkin, Vadim Cherezov, Valentin Gordeliy, Georg Büldt, Thomas Gensch, Valentin Borshchevskiy
Citation: Bogorodskiy, A. et al., 2015. Nucleation and Growth of Membrane Protein CrystalsIn Meso--A Fluorescence Microscopy Study. Crystal Growth & Design, 15(12), pp.5656-5660.
Type: Journal-article
Authors: Jeffrey D. Rudolf, Lance Bigelow, Changsoo Chang, Marianne E. Cuff, Jeremy R. Lohman, Chin-Yuan Chang, Ming Ma, Dong Yang, Shonda Clancy, Gyorgy Babnigg, Andrzej Joachimiak, George N. Phillips, Ben Shen
Citation: Rudolf, J.D. et al., 2015. Crystal Structure of the Zorbamycin-Binding Protein ZbmA, the Primary Self-Resistance Element in Streptomyces flavoviridis ATCC21892 . Biochemistry, 54(45), pp.6842-6851.
Type: Journal-article
Authors: Daniel A. Keedy, James S. Fraser, Henry van den Bedem
Citation: Keedy, D.A., Fraser, J.S. & van den Bedem, H., 2015. Exposing Hidden Alternative Backbone Conformations in X-ray Crystallography Using qFit A. Shehu, ed. PLoS Comput Biol, 11(10), p.e1004507.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Oleksandr Yefanov, Valerio Mariani, Cornelius Gati, Thomas A. White, Henry N. Chapman, Anton Barty
Citation: Yefanov, O. et al., 2015. Accurate determination of segmented X-ray detector geometry. Optics Express, 23(22), p.28459.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Kenji Murakami, Kuang-Lei Tsai, Nir Kalisman, David A. Bushnell, Francisco J. Asturias, Roger D. Kornberg
Citation: Murakami, K. et al., 2015. Structure of an RNA polymerase II preinitiation complex. Proceedings of the National Academy of Sciences, 112(44), pp.13543-13548.
Type: Journal-article
Authors: Richard A. Kirian, Henry N. Chapman
Citation: Kirian, R.A. & Chapman, H.N., 2015. Imaging of Objects by Coherent Diffraction of X-Ray FEL Pulses. Synchrotron Light Sources and Free-Electron Lasers, pp.1-55.
Type: Book-chapter
Authors: Daniel A Keedy, Lillian R Kenner, Matthew Warkentin, Rahel A Woldeyes, Jesse B Hopkins, Michael C Thompson, Aaron S Brewster, Andrew H Van Benschoten, Elizabeth L Baxter, Monarin Uervirojnangkoorn, Scott E McPhillips, Jinhu Song, Roberto Alonso-Mori, James M Holton, William I Weis, Axel T Brunger, S Michael Soltis, Henrik Lemke, Ana Gonzalez, Nicholas K Sauter, Aina E Cohen, Henry van den Bedem, Robert E Thorne, James S Fraser
Citation: Keedy, D.A. et al., 2015. Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography. eLife, 4.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jeremy R. Lohman, Ming Ma, Jerzy Osipiuk, Boguslaw Nocek, Youngchang Kim, Changsoo Chang, Marianne Cuff, Jamey Mack, Lance Bigelow, Hui Li, Michael Endres, Gyorgy Babnigg, Andrzej Joachimiak, George N. Phillips, Ben Shen
Citation: Lohman, J.R. et al., 2015. Structural and evolutionary relationships of "AT-less" type I polyketide synthase ketosynthases. Proceedings of the National Academy of Sciences, 112(41), pp.12693-12698.
Type: Journal-article
Authors: Haitao Zhang, Hamiyet Unal, Russell Desnoyer, Gye Won Han, Nilkanth Patel, Vsevolod Katritch, Sadashiva S. Karnik, Vadim Cherezov, Raymond C. Stevens
Citation: Zhang, H. et al., 2015. Structural Basis for Ligand Recognition and Functional Selectivity at Angiotensin Receptor. J. Biol. Chem., 290(49), pp.29127-29139.
Type: Journal-article
Authors: Lorenzo Galli, Sang-Kil Son, Thomas R. M. Barends, Thomas A. White, Anton Barty, Sabine Botha, Sébastien Boutet, Carl Caleman, R. Bruce Doak, Max H. Nanao, Karol Nass, Robert L. Shoeman, Nicusor Timneanu, Robin Santra, Ilme Schlichting, Henry N. Chapman
Citation: Galli, L. et al., 2015. Towards phasing using high X-ray intensity. IUCrJ, 2(6), pp.627-634.
Type: Journal-article
Authors: Philip J Robinson, Michael J Trnka, Riccardo Pellarin, Charles H Greenberg, David A Bushnell, Ralph Davis, Alma L Burlingame, Andrej Sali, Roger D Kornberg
Citation: Robinson, P.J. et al., 2015. Molecular architecture of the yeast Mediator complex. eLife, 4.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: J C H Spence, G Subramanian, P Musumeci
Citation: Spence, J.C.H., Subramanian, G. & Musumeci, P., 2015. Hollow cone illumination for fast TEM, and outrunning damage with electrons. Journal of Physics B: Atomic, Molecular and Optical Physics, 48(21), p.214003.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Joe P. J. Chen, Richard A. Kirian, Kenneth R. Beyerlein, Richard J. Bean, Andrew J. Morgan, Oleksandr M. Yefanov, Romain D. Arnal, David H. Wojtas, Phil J. Bones, Henry N. Chapman, John C. H. Spence, Rick P. Millane
Citation: Chen, J.P.J. et al., 2015. Image reconstruction in serial femtosecond nanocrystallography using x-ray free-electron lasers Philip J. Bones, M. A. Fiddy, & R. P. Millane, eds. Image Reconstruction from Incomplete Data VIII.
Type: Proceedings-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Thomas Kierspel, Joss Wiese, Terry Mullins, Joseph Robinson, Andy Aquila, Anton Barty, Richard Bean, Rebecca Boll, Sébastien Boutet, Philip Bucksbaum, Henry N Chapman, Lauge Christensen, Alan Fry, Mark Hunter, Jason E Koglin, Mengning Liang, Valerio Mariani, Andrew Morgan, Adi Natan, Vladimir Petrovic, Daniel Rolles, Artem Rudenko, Kirsten Schnorr, Henrik Stapelfeldt, Stephan Stern, Jan Thøgersen, Chun Hong Yoon, Fenglin Wang, Sebastian Trippel, Jochen Küpper
Citation: Kierspel, T. et al., 2015. Strongly aligned gas-phase molecules at free-electron lasers. Journal of Physics B: Atomic, Molecular and Optical Physics, 48(20), p.204002.
Type: Journal-article
Authors: W. Wierzchowski, K. Wieteska, R. Sobierajski, D. Klinger, J. Pełka, D. Żymierska, C. Paulmann, S.P. Hau-Riege, R.A. London, A. Graf, T. Burian, J. Chalupský, J. Gaudin, J. Krzywinski, S. Moeller, M. Messerschmidt, J. Bozek, Ch. Bostedt
Citation: Wierzchowski, W. et al., 2015. Synchrotron topographic evaluation of strain around craters generated by irradiation with X-ray pulses from free electron laser with different intensities. Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, 364, pp.20-26.
Type: Journal-article
Authors: Jose A. Rodriguez, Magdalena I. Ivanova, Michael R. Sawaya, Duilio Cascio, Francis E. Reyes, Dan Shi, Smriti Sangwan, Elizabeth L. Guenther, Lisa M. Johnson, Meng Zhang, Lin Jiang, Mark A. Arbing, Brent L. Nannenga, Johan Hattne, Julian Whitelegge, Aaron S. Brewster, Marc Messerschmidt, Sébastien Boutet, Nicholas K. Sauter, Tamir Gonen, David S. Eisenberg
Citation: Rodriguez, J.A. et al., 2015. Structure of the toxic core of α-synuclein from invisible crystals. Nature, 525(7570), pp.486-490.
Type: Journal-article
Authors: J Hoszowska, J Szlachetko, J-Cl Dousse, W Błachucki, Y Kayser, Ch Milne, M Pajek, S Boutet, M Messerschmidt, G Williams, C T Chantler
Citation: Hoszowska, J. et al., 2015. X-ray two-photon absorption with high fluence XFEL pulses. Journal of Physics: Conference Series, 635(10), p.102009.
Type: Journal-article
Authors: Furqan M. Fazal, Cong A. Meng, Kenji Murakami, Roger D. Kornberg, Steven M. Block
Citation: Fazal, F.M. et al., 2015. Real-time observation of the initiation of RNA polymerase II transcription. Nature, 525(7568), pp.274-277.
Type: Journal-article
Authors: Matthias Fuchs, Mariano Trigo, Jian Chen, Shambhu Ghimire, Sharon Shwartz, Michael Kozina, Mason Jiang, Thomas Henighan, Crystal Bray, Georges Ndabashimiye, Philip H. Bucksbaum, Yiping Feng, Sven Herrmann, Gabriella A. Carini, Jack Pines, Philip Hart, Christopher Kenney, Serge Guillet, Sébastien Boutet, Garth J. Williams, Marc Messerschmidt, M. Marvin Seibert, Stefan Moeller, Jerome B. Hastings, David A. Reis
Citation: Fuchs, M. et al., 2015. Anomalous nonlinear X-ray Compton scattering. Nature Physics, 11(11), pp.964-970.
Type: Journal-article
Authors: David Mavor, James Fraser,
Citation: Mavor, D. & Fraser, J., 2015. Determination of Ubiquitin Fitness Landscapes Under Different Chemical Stresses in a Classroom Setting.
Type: Posted-content
Authors: Niko Eckerskorn, Richard Bowman, Richard A. Kirian, Salah Awel, Max Wiedorn, Jochen Küpper, Miles J. Padgett, Henry N. Chapman, Andrei V. Rode
Citation: Eckerskorn, N. et al., 2015. Toward steering a jet of particles into an x-ray beam with optically induced forces K. Dholakia & G. C. Spalding, eds. Optical Trapping and Optical Micromanipulation XII.
Type: Proceedings-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Zhen Gong, Jose M. Martin-Garcia, Sasha M. Daskalova, Felicia M. Craciunescu, Lusheng Song, Katerina Dörner, Debra T. Hansen, Jay-How Yang, Joshua LaBaer, Brenda G. Hogue, Tsafrir S. Mor, Petra Fromme
Citation: Gong, Z. et al., 2015. Biophysical Characterization of a Vaccine Candidate against HIV-1: The Transmembrane and Membrane Proximal Domains of HIV-1 gp41 as a Maltose Binding Protein Fusion A. Kumar, ed. PLoS ONE, 10(8), p.e0136507.
Type: Journal-article
Authors: Robert M. Lawrence, Chelsie E. Conrad, Nadia A. Zatsepin, Thomas D. Grant, Haiguang Liu, Daniel James, Garrett Nelson, Ganesh Subramanian, Andrew Aquila, Mark S. Hunter, Mengning Liang, Sébastien Boutet, Jesse Coe, John C. H. Spence, Uwe Weierstall, Wei Liu, Petra Fromme, Vadim Cherezov, Brenda G. Hogue
Citation: Lawrence, R.M. et al., 2015. Serial femtosecond X-ray diffraction of enveloped virus microcrystals. Structural Dynamics, 2(4), p.041720.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Bahige G. Abdallah, Nadia A. Zatsepin, Shatabdi Roy-Chowdhury, Jesse Coe, Chelsie E. Conrad, Katerina Dörner, Raymond G. Sierra, Hilary P. Stevenson, Fernanda Camacho-Alanis, Thomas D. Grant, Garrett Nelson, Daniel James, Guillermo Calero, Rebekka M. Wachter, John C. H. Spence, Uwe Weierstall, Petra Fromme, Alexandra Ros
Citation: Abdallah, B.G. et al., 2015. Microfluidic sorting of protein nanocrystals by size for X-ray free-electron laser diffraction. Structural Dynamics, 2(4), p.041719.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Abbas Ourmazd
Citation: Ourmazd, A., 2015. Preface for Special Issue on Biology with X-ray Lasers 2. Structural Dynamics, 2(4), p.041501.
Type: Journal-article
Authors: Benjamin A Barad, Nathaniel Echols, Ray Yu-Ruei Wang, Yifan Cheng, Frank DiMaio, Paul D Adams, James S Fraser
Citation: Barad, B.A. et al., 2015. EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy. Nat Meth, 12(10), pp.943-946.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Raimund Fromme, Andrii Ishchenko, Markus Metz, Shatabdi Roy Chowdhury, Shibom Basu, Sébastien Boutet, Petra Fromme, Thomas A. White, Anton Barty, John C. H. Spence, Uwe Weierstall, Wei Liu, Vadim Cherezov
Citation: Fromme, R. et al., 2015. Serial femtosecond crystallography of soluble proteins in lipidic cubic phase. IUCrJ, 2(5), pp.545-551.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Shanteri Singh, Karolina Michalska, Lance Bigelow, Michael Endres, Madan K. Kharel, Gyorgy Babnigg, Ragothaman M. Yennamalli, Craig A. Bingman, Andrzej Joachimiak, Jon S. Thorson, George N. Phillips
Citation: Singh, S. et al., 2015. Structural Characterization of CalS8, a TDP-α-d-Glucose Dehydrogenase Involved in Calicheamicin Aminodideoxypentose Biosynthesis. J. Biol. Chem., 290(43), pp.26249-26258.
Type: Journal-article
Authors: Andrew H. Van Benschoten, Pavel V. Afonine, Thomas C. Terwilliger, Michael E. Wall, Colin J. Jackson, Nicholas K. Sauter, Paul D. Adams, Alexandre Urzhumtsev, James S. Fraser
Citation: Van Benschoten, A.H. et al., 2015. Predicting X-ray diffuse scattering from translation-libration-screw structural ensembles. Acta Crystallogr D, 71(8), pp.1657-1667.
Type: Journal-article
Authors: Alexandre Urzhumtsev, Pavel V. Afonine, Andrew H. Van Benschoten, James S. Fraser, Paul D. Adams
Citation: Urzhumtsev, A. et al., 2015. From deep TLS validation to ensembles of atomic models built from elemental motions. Acta Crystallogr D, 71(8), pp.1668-1683.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Premila P. Samuel, Lucian P. Smith, George N. Phillips, John S. Olson
Citation: Samuel, P.P. et al., 2015. Apoglobin Stability Is the Major Factor Governing both Cell-free andin VivoExpression of Holomyoglobin. Journal of Biological Chemistry, 290(39), pp.23479-23495.
Type: Journal-article
Authors: Yanyong Kang, X. Edward Zhou, Xiang Gao, Yuanzheng He, Wei Liu, Andrii Ishchenko, Anton Barty, Thomas A. White, Oleksandr Yefanov, Gye Won Han, Qingping Xu, Parker W. de Waal, Jiyuan Ke, M. H. Eileen Tan, Chenghai Zhang, Arne Moeller, Graham M. West, Bruce D. Pascal, Ned Van Eps, Lydia N. Caro, Sergey A. Vishnivetskiy, Regina J. Lee, Kelly M. Suino-Powell, Xin Gu, Kuntal Pal, Jinming Ma, Xiaoyong Zhi, Sébastien Boutet, Garth J. Williams, Marc Messerschmidt, Cornelius Gati, Nadia A. Zatsepin, Dingjie Wang, Daniel James, Shibom Basu, Shatabdi Roy-Chowdhury, Chelsie E. Conrad, Jesse Coe, Haiguang Liu, Stella Lisova, Christopher Kupitz, Ingo Grotjohann, Raimund Fromme, Yi Jiang, Minjia Tan, Huaiyu Yang, Jun Li, Meitian Wang, Zhong Zheng, Dianfan Li, Nicole Howe, Yingming Zhao, Jörg Standfuss, Kay Diederichs, Yuhui Dong, Clinton S. Potter, Bridget Carragher, Martin Caffrey, Hualiang Jiang, Henry N. Chapman, John C. H. Spence, Petra Fromme, Uwe Weierstall, Oliver P. Ernst, Vsevolod Katritch, Vsevolod V. Gurevich, Patrick R. Griffin, Wayne L. Hubbell, Raymond C. Stevens, Vadim Cherezov, Karsten Melcher, H. Eric Xu
Citation: Kang, Y. et al., 2015. Crystal structure of rhodopsin bound to arrestin by femtosecond X-ray laser. Nature, 523(7562), pp.561-567.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: S. Goyal, M. Jäger, P.N. Robinson, V. Vanita
Citation: Goyal, S. et al., 2015. Confirmation of TTC8 as a disease gene for nonsyndromic autosomal recessive retinitis pigmentosa (RP51) . Clinical Genetics, 89(4), pp.454-460.
Type: Journal-article
Authors: Marcus Fischer, Brian K. Shoichet, James S. Fraser
Citation: Fischer, M., Shoichet, B.K. & Fraser, J.S., 2015. Inside Cover: One Crystal, Two Temperatures: Cryocooling Penalties Alter Ligand Binding to Transient Protein Sites (ChemBioChem 11/2015). ChemBioChem, 16(11), pp.1526-1526.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: J. Chalupský, P. Boháček, T. Burian, V. Hájková, S. P. Hau-Riege, P. A. Heimann, L. Juha, M. Messerschmidt, S. P. Moeller, B. Nagler, M. Rowen, W. F. Schlotter, M. L. Swiggers, J. J. Turner, J. Krzywinski
Citation: Chalupský, J. et al., 2015. Imprinting a Focused X-Ray Laser Beam to Measure Its Full Spatial Characteristics. Physical Review Applied, 4(1).
Type: Journal-article
Authors: Hartawan Laksmono, Trevor A. McQueen, Jonas A. Sellberg, N. Duane Loh, Congcong Huang, Daniel Schlesinger, Raymond G. Sierra, Christina Y. Hampton, Dennis Nordlund, Martin Beye, Andrew V. Martin, Anton Barty, M. Marvin Seibert, Marc Messerschmidt, Garth J. Williams, Sébastien Boutet, Katrin Amann-Winkel, Thomas Loerting, Lars G. M. Pettersson, Michael J. Bogan, Anders Nilsson
Citation: Laksmono, H. et al., 2015. Anomalous Behavior of the Homogeneous Ice Nucleation Rate in "No-Man's Land." The Journal of Physical Chemistry Letters, 6(14), pp.2826-2832.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: M Mucke, V Zhaunerchyk, L J Frasinski, R J Squibb, M Siano, J H D Eland, P Linusson, P Salén, P v d Meulen, R D Thomas, M Larsson, L Foucar, J Ullrich, K Motomura, S Mondal, K Ueda, T Osipov, L Fang, B F Murphy, N Berrah, C Bostedt, J D Bozek, S Schorb, M Messerschmidt, J M Glownia, J P Cryan, R N Coffee, O Takahashi, S Wada, M N Piancastelli, R Richter, K C Prince, R Feifel
Citation: Mucke, M. et al., 2015. Covariance mapping of two-photon double core hole states in C2H2and C2H6produced by an x-ray free electron laser. New J. Phys., 17(7), p.073002.
Type: Journal-article
Authors: Johan Hattne, Nathaniel Echols, Rosalie Tran, Jan Kern, Richard J Gildea, Aaron S Brewster, Roberto Alonso-Mori, Carina Glöckner, Julia Hellmich, Hartawan Laksmono, Raymond G Sierra, Benedikt Lassalle-Kaiser, Alyssa Lampe, Guangye Han, Sheraz Gul, Dörte DiFiore, Despina Milathianaki, Alan R Fry, Alan Miahnahri, William E White, Donald W Schafer, M Marvin Seibert, Jason E Koglin, Dimosthenis Sokaras, Tsu-Chien Weng, Jonas Sellberg, Matthew J Latimer, Pieter Glatzel, Petrus H Zwart, Ralf W Grosse-Kunstleve, Michael J Bogan, Marc Messerschmidt, Garth J Williams, Sébastien Boutet, Johannes Messinger, Athina Zouni, Junko Yano, Uwe Bergmann, Vittal K Yachandra, Paul D Adams, Nicholas K Sauter
Citation: Hattne, J. et al., 2015. Corrigendum: Accurate macromolecular structures using minimal measurements from X-ray free-electron lasers. Nat Meth, 12(7), pp.692-692.
Type: Journal-article
Authors: Valérie Panneels, Wenting Wu, Ching-Ju Tsai, Przemek Nogly, Jan Rheinberger, Kathrin Jaeger, Gregor Cicchetti, Cornelius Gati, Leonhard M. Kick, Leonardo Sala, Guido Capitani, Chris Milne, Celestino Padeste, Bill Pedrini, Xiao-Dan Li, Jörg Standfuss, Rafael Abela, Gebhard Schertler
Citation: Panneels, V. et al., 2015. Time-resolved structural studies with serial crystallography: A new light on retinal proteins. Structural Dynamics, 2(4), p.041718.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Chelsie E. Conrad, Shibom Basu, Daniel James, Dingjie Wang, Alexander Schaffer, Shatabdi Roy-Chowdhury, Nadia A. Zatsepin, Andrew Aquila, Jesse Coe, Cornelius Gati, Mark S. Hunter, Jason E. Koglin, Christopher Kupitz, Garrett Nelson, Ganesh Subramanian, Thomas A. White, Yun Zhao, James Zook, Sébastien Boutet, Vadim Cherezov, John C. H. Spence, Raimund Fromme, Uwe Weierstall, Petra Fromme
Citation: Conrad, C.E. et al., 2015. A novel inert crystal delivery medium for serial femtosecond crystallography. IUCrJ, 2(4), pp.421-430.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Ashtamurthy S. Pawate, Vukica Šrajer, Jeremy Schieferstein, Sudipto Guha, Robert Henning, Irina Kosheleva, Marius Schmidt, Zhong Ren, Paul J. A. Kenis, Sarah L. Perry
Citation: Pawate, A.S. et al., 2015. Towards time-resolved serial crystallography in a microfluidic device. Acta Crystallogr Sect F Struct Biol Cryst Commun, 71(7), pp.823-830.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Wenting Wu, Przemyslaw Nogly, Jan Rheinberger, Leonhard M. Kick, Cornelius Gati, Garrett Nelson, Xavier Deupi, Jörg Standfuss, Gebhard Schertler, Valérie Panneels
Citation: Wu, W. et al., 2015. Batch crystallization of rhodopsin for structural dynamics using an X-ray free-electron laser. Acta Crystallogr Sect F Struct Biol Cryst Commun, 71(7), pp.856-860.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Geoffrey K. Feld, Michael Heymann, W. Henry Benner, Tommaso Pardini, Ching-Ju Tsai, Sébastien Boutet, Matthew A. Coleman, Mark S. Hunter, Xiaodan Li, Marc Messerschmidt, Achini Opathalage, Bill Pedrini, Garth J. Williams, Bryan A. Krantz, Seth Fraden, Stefan Hau-Riege, James E. Evans, Brent W. Segelke, Matthias Frank
Citation: Feld, G.K. et al., 2015. Low- Z polymer sample supports for fixed-target serial femtosecond X-ray crystallography . J Appl Crystallogr, 48(4), pp.1072-1079.
Type: Journal-article
Authors: JR Lohman, A Joachimiak, GN Phillips Jr, B Shen
Citation: Lohman, J. et al., 2015. Structural and evolutionary relationships of ketosynthase domains from modular polyketide synthases. Planta Medica, 81(11).
Type: Journal-article
Authors: R. A. Kirian, S. Awel, N. Eckerskorn, H. Fleckenstein, M. Wiedorn, L. Adriano, S. Bajt, M. Barthelmess, R. Bean, K. R. Beyerlein, L. M. G. Chavas, M. Domaracky, M. Heymann, D. A. Horke, J. Knoska, M. Metz, A. Morgan, D. Oberthuer, N. Roth, T. Sato, P. L. Xavier, O. Yefanov, A. V. Rode, J. Küpper, H. N. Chapman
Citation: Kirian, R.A. et al., 2015. Simple convergent-nozzle aerosol injector for single-particle diffractive imaging with X-ray free-electron lasers. Structural Dynamics, 2(4), p.041717.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jing Yang, Antonella Cusimano, Jappmann K. Monga, Morgan E. Preziosi, Filippo Pullara, Guillermo Calero, Richard Lang, Terry P. Yamaguchi, Kari N. Nejak-Bowen, Satdarshan P. Monga
Citation: Yang, J. et al., 2015. WNT5A Inhibits Hepatocyte Proliferation and Concludes β-Catenin Signaling in Liver Regeneration. The American Journal of Pathology, 185(8), pp.2194-2205.
Type: Journal-article
Authors: H. C. Poon, D. K. Saldin
Citation: Poon, H.C. & Saldin, D.K., 2015. Use of triple correlations for the sign determinations of expansion coefficients of symmetric approximations to the diffraction volumes of regular viruses. Structural Dynamics, 2(4), p.041716.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Steve P. Meisburger, Suzette A. Pabit, Lois Pollack
Citation: Meisburger, S.P., Pabit, S.A. & Pollack, L., 2015. Determining the Locations of Ions and Water around DNA from X-Ray Scattering Measurements. Biophysical Journal, 108(12), pp.2886-2895.
Type: Journal-article
Authors: Kenji Murakami, Pierre-Jean Mattei, Ralph E. Davis, Huiyan Jin, Craig D. Kaplan, Roger D. Kornberg
Citation: Murakami, K. et al., 2015. Uncoupling Promoter Opening from Start-Site Scanning. Molecular Cell, 59(1), pp.133-138.
Type: Journal-article
Authors: Chufeng Li, Kevin Schmidt, John C. Spence
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Maike Bublitz, Karol Nass, Nikolaj D. Drachmann, Anders J. Markvardsen, Matthias J. Gutmann, Thomas R. M. Barends, Daniel Mattle, Robert L. Shoeman, R. Bruce Doak, Sébastien Boutet, Marc Messerschmidt, Marvin M. Seibert, Garth J. Williams, Lutz Foucar, Linda Reinhard, Oleg Sitsel, Jonas L. Gregersen, Johannes D. Clausen, Thomas Boesen, Kamil Gotfryd, Kai-Tuo Wang, Claus Olesen, Jesper V. Møller, Poul Nissen, Ilme Schlichting
Citation: Bublitz, M. et al., 2015. Structural studies of P-type ATPase-ligand complexes using an X-ray free-electron laser. IUCrJ, 2(4), pp.409-420.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Shanteri Singh, Youngchang Kim, Fengbin Wang, Lance Bigelow, Michael Endres, Madan K. Kharel, Gyorgy Babnigg, Craig A. Bingman, Andrzej Joachimiak, Jon S. Thorson, George N. Phillips
Citation: Singh, S. et al., 2015. Structural characterization of AtmS13, a putative sugar aminotransferase involved in indolocarbazole AT2433 aminopentose biosynthesis. Proteins: Structure, Function, and Bioinformatics, 83(8), pp.1547-1554.
Type: Journal-article
Authors: Ying Wu, Leonardus M. I. Koharudin, Jennifer Mehrens, Maria DeLucia, Chang-Hyeok Byeon, In-Ja L. Byeon, Guillermo Calero, Jinwoo Ahn, Angela M. Gronenborn
Citation: Wu, Y. et al., 2015. Structural Basis of Clade-specific Engagement of SAMHD1 (Sterile α Motif and Histidine/Aspartate-containing Protein 1) Restriction Factors by Lentiviral Viral Protein X (Vpx) Virulence Factors. Journal of Biological Chemistry, 290(29), pp.17935-17945.
Type: Journal-article
Authors: Jesse N. Clark, Loren Beitra, Gang Xiong, David M. Fritz, Henrik T. Lemke, Diling Zhu, Matthieu Chollet, Garth J. Williams, Marc M. Messerschmidt, Brian Abbey, Ross J. Harder, Alexander M. Korsunsky, Justin S. Wark, David A. Reis, Ian K. Robinson
Citation: Clark, J.N. et al., 2015. Imaging transient melting of a nanocrystal using an X-ray laser. Proc Natl Acad Sci USA, 112(24), pp.7444-7448.
Type: Journal-article
Authors: Mauro Prasciolu, Anton Haase, Frank Scholze, Henry N. Chapman, Saša Bajt
Citation: Prasciolu, M. et al., 2015. Extended asymmetric-cut multilayer X-ray gratings. Optics Express, 23(12), p.15195.
Type: Journal-article
Authors: Andrew J. Morgan, Mauro Prasciolu, Andrzej Andrejczuk, Jacek Krzywinski, Alke Meents, David Pennicard, Heinz Graafsma, Anton Barty, Richard J. Bean, Miriam Barthelmess, Dominik Oberthuer, Oleksandr Yefanov, Andrew Aquila, Henry N. Chapman, Saša Bajt
Citation: Morgan, A.J. et al., 2015. High numerical aperture multilayer Laue lenses. Scientific Reports, 5(1).
Type: Journal-article
Authors: Fengbin Wang, Shanteri Singh, Weijun Xu, Kate E. Helmich, Mitchell D. Miller, Hongnan Cao, Craig A. Bingman, Jon S. Thorson, George N. Phillips
Citation: Wang, F. et al., 2015. Structural Basis for the Stereochemical Control of Amine Installation in Nucleotide Sugar Aminotransferases. ACS Chemical Biology, 10(9), pp.2048-2056.
Type: Journal-article
Authors: Marcus Fischer, Brian K. Shoichet, James S. Fraser
Citation: Fischer, M., Shoichet, B.K. & Fraser, J.S., 2015. One Crystal, Two Temperatures: Cryocooling Penalties Alter Ligand Binding to Transient Protein Sites. ChemBioChem, 16(11), pp.1560-1564.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Eynat Dellus-Gur, Mikael Elias, Emilia Caselli, Fabio Prati, Merijn L.M. Salverda, J. Arjan G.M. de Visser, James S. Fraser, Dan S. Tawfik
Citation: Dellus-Gur, E. et al., 2015. Negative Epistasis and Evolvability in TEM-1 β-Lactamase--The Thin Line between an Enzyme's Conformational Freedom and Disorder. Journal of Molecular Biology, 427(14), pp.2396-2409.
Type: Journal-article
Authors: James Zook, Gina Mo, Nicholas J. Sisco, Felicia M. Craciunescu, Debra T. Hansen, Bobby Baravati, Brian R. Cherry, Kathryn Sykes, Rebekka Wachter, Wade D. Van Horn, Petra Fromme
Citation: Zook, J. et al., 2015. NMR Structure of Francisella tularensis Virulence Determinant Reveals Structural Homology to Bet v1 Allergen Proteins. Structure, 23(6), pp.1116-1122.
Type: Journal-article
Authors: Joseph R. Luft, Jennifer R. Wolfley, Eleanor Cook Franks, Angela M. Lauricella, Ellen J. Gualtieri, Edward H. Snell, Rong Xiao, John K. Everett, Gaetano T. Montelione
Citation: Luft, J.R. et al., 2015. The detection and subsequent volume optimization of biological nanocrystals. Structural Dynamics, 2(4), p.041710.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Joshua R. Kane, David J. Stanley, Judd F. Hultquist, Jeffrey R. Johnson, Nicole Mietrach, Jennifer M. Binning, Stefán R. Jónsson, Sarah Barelier, Billy W. Newton, Tasha L. Johnson, Kathleen E. Franks-Skiba, Ming Li, William L. Brown, Hörður I. Gunnarsson, Adalbjorg Adalbjornsdóttir, James S. Fraser, Reuben S. Harris, Valgerður Andrésdóttir, John D. Gross, Nevan J. Krogan
Citation: Kane, J.R. et al., 2015. Lineage-Specific Viral Hijacking of Non-canonical E3 Ubiquitin Ligase Cofactors in the Evolution of Vif Anti-APOBEC3 Activity. Cell Reports, 11(8), pp.1236-1250.
Type: Journal-article
Authors: L. M. G. Chavas, L. Gumprecht, H. N. Chapman
Citation: Chavas, L.M.G., Gumprecht, L. & Chapman, H.N., 2015. Possibilities for serial femtosecond crystallography sample delivery at future light sourcesa). Structural Dynamics, 2(4), p.041709.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jay-How Yang, Iosifina Sarrou, Jose M. Martin-Garcia, Shangji Zhang, Kevin E. Redding, Petra Fromme
Citation: Yang, J.-H. et al., 2015. Purification and biochemical characterization of the ATP synthase from Heliobacterium modesticaldum. Protein Expression and Purification, 114, pp.1-8.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Marius Schmidt, Kanupriya Pande, Shibom Basu, Jason Tenboer
Citation: Schmidt, M. et al., 2015. Room temperature structures beyond 1.5 ... by serial femtosecond crystallography. Structural Dynamics, 2(4), p.041708.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: W. Helml, A. R. Maier, W. Schweinberger, I. Grguraš, P. Radcliffe, G. Doumy, C. Roedig, J. Gagnon, M. Messerschmidt, S. Schorb, C. Bostedt, F. Grüner, L. F. DiMauro, D. Cubaynes, J. D. Bozek, Th. Tschentscher, J. T. Costello, M. Meyer, R. Coffee, S. Düsterer, A. L. Cavalieri, R. Kienberger
Citation: Helml, W. et al., 2015. Sub-Femtosecond Free-Electron Laser Pulses. CLEO: 2015.
Type: Proceedings-article
Authors: Daniel A Keedy, James Fraser, Henry van den Bedem
Citation: Keedy, D.A., Fraser, J. & van den Bedem, H., 2015. Exposing hidden alternative backbone conformations in X-ray crystallography using qFit.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: A. Hosseinizadeh, A. Dashti, P. Schwander, R. Fung, A. Ourmazd
Citation: Hosseinizadeh, A. et al., 2015. Single-particle structure determination by X-ray free-electron lasers: Possibilities and challenges. Structural Dynamics, 2(4), p.041601.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: L. Galli, S.-K. Son, M. Klinge, S. Bajt, A. Barty, R. Bean, C. Betzel, K. R. Beyerlein, C. Caleman, R. B. Doak, M. Duszenko, H. Fleckenstein, C. Gati, B. Hunt, R. A. Kirian, M. Liang, M. H. Nanao, K. Nass, D. Oberthür, L. Redecke, R. Shoeman, F. Stellato, C. H. Yoon, T. A. White, O. Yefanov, J. Spence, H. N. Chapman
Citation: Galli, L. et al., 2015. Electronic damage in S atoms in a native protein crystal induced by an intense X-ray free-electron laser pulse. Structural Dynamics, 2(4), p.041703.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Do Jin Kim, Eduard Bitto, Craig A. Bingman, Hyun-Jung Kim, Byung Woo Han, George N. Phillips
Citation: Kim, D.J. et al., 2015. Crystal structure of the protein At3g01520, a eukaryotic universal stress protein-like protein from arabidopsis thaliana in complex with AMP . Proteins: Structure, Function, and Bioinformatics, 83(7), pp.1368-1373.
Type: Journal-article
Authors: Haitao Zhang, Hamiyet Unal, Cornelius Gati, Gye Won Han, Wei Liu, Nadia A. Zatsepin, Daniel James, Dingjie Wang, Garrett Nelson, Uwe Weierstall, Michael R. Sawaya, Qingping Xu, Marc Messerschmidt, Garth J. Williams, Sébastien Boutet, Oleksandr M. Yefanov, Thomas A. White, Chong Wang, Andrii Ishchenko, Kalyan C. Tirupula, Russell Desnoyer, Jesse Coe, Chelsie E. Conrad, Petra Fromme, Raymond C. Stevens, Vsevolod Katritch, Sadashiva S. Karnik, Vadim Cherezov
Citation: Zhang, H. et al., 2015. Structure of the Angiotensin Receptor Revealed by Serial Femtosecond Crystallography. Cell, 161(4), pp.833-844.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Thomas Charles Terwilliger, Li-Wei Hung, Paul D. Adams, Nathanial D Echols, Ralf Grosse-Kunstleve, James Holton, Gabor Bunkoczi, Randy J. Read, David Akey, Janet Smith
Citation: Terwilliger, T.C. et al., 2015. Structure determination with weak anomalous signal.
Type: Report
Authors: Michele E. Auldridge, Hongnan Cao, Saurabh Sen, Laura P. Franz, Craig A. Bingman, Ragothaman M. Yennamalli, George N. Phillips, David Mead, Eric J. Steinmetz
Citation: Auldridge, M.E. et al., 2015. LucY: A Versatile New Fluorescent Reporter Protein S. W. Michnick, ed. PLoS ONE, 10(4), p.e0124272.
Type: Journal-article
Authors: Diana C.F. Monteiro, Vijay Patel, Christopher P. Bartlett, Shingo Nozaki, Thomas D. Grant, James A. Gowdy, Gary S. Thompson, Arnout P. Kalverda, Edward H. Snell, Hironori Niki, Arwen R. Pearson, Michael E. Webb
Citation: Monteiro, D.C.F. et al., 2015. The Structure of the PanD/PanZ Protein Complex Reveals Negative Feedback Regulation of Pantothenate Biosynthesis by Coenzyme A. Chemistry & Biology, 22(4), pp.492-503.
Type: Journal-article
Authors: A. Aquila, A. Barty, C. Bostedt, S. Boutet, G. Carini, D. dePonte, P. Drell, S. Doniach, K. H. Downing, T. Earnest, H. Elmlund, V. Elser, M. Gühr, J. Hajdu, J. Hastings, S. P. Hau-Riege, Z. Huang, E. E. Lattman, F. R. N. C. Maia, S. Marchesini, A. Ourmazd, C. Pellegrini, R. Santra, I. Schlichting, C. Schroer, J. C. H. Spence, I. A. Vartanyants, S. Wakatsuki, W. I. Weis, G. J. Williams
Citation: Aquila, A. et al., 2015. The linac coherent light source single particle imaging road map. Structural Dynamics, 2(4), p.041701.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Thomas Barends, Thomas A. White, Anton Barty, Lutz Foucar, Marc Messerschmidt, Roberto Alonso-Mori, Sabine Botha, Henry Chapman, R. Bruce Doak, Lorenzo Galli, Cornelius Gati, Matthias Gutmann, Jason Koglin, Anders Markvardsen, Karol Nass, Dominik Oberthur, Robert L. Shoeman, Ilme Schlichting, Sébastien Boutet
Citation: Barends, T. et al., 2015. Effects of self-seeding and crystal post-selection on the quality of Monte Carlo-integrated SFX data. Journal of Synchrotron Radiation, 22(3), pp.644-652.
Type: Journal-article
Authors: Jesse Coe, Christopher Kupitz, Shibom Basu, Chelsie E. Conrad, Shatabdi Roy-Chowdhury, Raimund Fromme, Petra Fromme
Citation: Coe, J. et al., 2015. Crystallization of Photosystem II for Time-Resolved Structural Studies Using an X-ray Free Electron Laser. Membrane Proteins--Engineering, Purification and Crystallization, pp.459-482.
Type: Book-chapter
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Volker Schweikhard, Cong A. Meng, Kenji Murakami, Craig D. Kaplan, Roger D. Kornberg, Steven M. Block
Citation: Schweikhard, V. et al., 2014. TFIIF and TFIIS Enhance the Mechanical Persistence of Transcript Elongation by RNA Polymerase II. Biophysical Journal, 106(2), p.486a.
Type: Journal-article
Authors: James D. Zook, Nicholas Sisco, Gina Mo, Debra Hansen, Felicia Craciunescu, Brian Cherry, Kathryn Sykes, Wade Van Horn, Petra Fromme
Citation: Zook, J.D. et al., 2014. High-Resolution NMR Spectroscopy Reveals Structure of Lipoprotein flpp3. Biophysical Journal, 106(2), p.193a.
Type: Journal-article
Authors: Alexander L. Van Slyke, Juan Wang, Avtar Singh, Lois Pollack, Warren R. Zipfel
Citation: Van Slyke, A.L. et al., 2014. Fast Binding Kinetics of RNA Aptamers Measured using a Novel Microfluidic Mixer. Biophysical Journal, 106(2), p.796a.
Type: Journal-article
Authors: Katerina Dörner, Jose Martin Garcia, Christopher Kupitz, Rebekka M. Wachter, Petra Fromme
Citation: Dörner, K. et al., 2014. Detection of Protein Nanocrystals Based on the Reversibility of Crystallization. Biophysical Journal, 106(2), p.458a.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Michael E. Wall, Thomas C. Terwilliger, James S. Fraser, Paul D. Adams, Nicholas K. Sauter, Andrew VanBenschoten
Citation: Wall, M.E. et al., 2014. Diffuse X-Ray Scattering for Ensemble Modeling of Crystalline Proteins. Biophysical Journal, 106(2), p.384a.
Type: Journal-article
Authors: Jose M. Martin, Debra T. Hansen, Andrrey Loskutov, Mark D. Robida, Felicia M. Craciunescu, Kathryn Sykes, Rebekka M. Wachter, Petra Fromme, James P. Allen
Citation: Martin, J.M. et al., 2014. Sequence Analysis and Biophysical Characterization Reveals the Presence of a Long Disordered Region in the CapA Membrane Protein from F. Tularensis. Biophysical Journal, 106(2), p.688a.
Type: Journal-article
Authors: Ken R. Ferguson, Maximilian Bucher, John D. Bozek, Sebastian Carron, Jean-Charles Castagna, Ryan Coffee, G. Ivan Curiel, Michael Holmes, Jacek Krzywinski, Marc Messerschmidt, Michael Minitti, Ankush Mitra, Stefan Moeller, Peter Noonan, Timur Osipov, Sebastian Schorb, Michele Swiggers, Alexander Wallace, Jing Yin, Christoph Bostedt
Citation: Ferguson, K.R. et al., 2015. The Atomic, Molecular and Optical Science instrument at the Linac Coherent Light Source. J Synchrotron Rad, 22(3), pp.492-497.
Type: Journal-article
Authors: R. Sophia Weerth, Karolina Michalska, Craig A. Bingman, Ragothaman M. Yennamalli, Hui Li, Robert Jedrzejczak, Fengbin Wang, Gyorgy Babnigg, Andrzej Joachimiak, Michael G. Thomas, George N. Phillips
Citation: Sophia Weerth, R. et al., 2015. Structure of a cupin protein Plu4264 from Photorhabdus luminescens subsp. laumondii TTO1 at 1.35 ... resolution . Proteins: Structure, Function, and Bioinformatics, 83(5), pp.1003-1003.
Type: Journal-article
Authors: Mengning Liang, Garth J. Williams, Marc Messerschmidt, M. Marvin Seibert, Paul A. Montanez, Matt Hayes, Despina Milathianaki, Andrew Aquila, Mark S. Hunter, Jason E. Koglin, Donald W. Schafer, Serge Guillet, Armin Busse, Robert Bergan, William Olson, Kay Fox, Nathaniel Stewart, Robin Curtis, Alireza Alan Miahnahri, Sébastien Boutet
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Type: Journal-article
Authors: K. Pande, M. Schmidt, P. Schwander, D. K. Saldin
Citation: Pande, K. et al., 2015. Simulations on time-resolved structure determination of uncrystallized biomolecules in the presence of shot noise. Structural Dynamics, 2(2), p.024103.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Sébastien Boutet, Lutz Foucar, Thomas R. M. Barends, Sabine Botha, R. Bruce Doak, Jason E. Koglin, Marc Messerschmidt, Karol Nass, Ilme Schlichting, M. Marvin Seibert, Robert L. Shoeman, Garth J. Williams
Citation: Boutet, S. et al., 2015. Characterization and use of the spent beam for serial operation of LCLS. J Synchrotron Rad, 22(3), pp.634-643.
Type: Journal-article
Authors: Y. Feng, R. Alonso-Mori, T. R. M. Barends, V. D. Blank, S. Botha, M. Chollet, D. S. Damiani, R. B. Doak, J. M. Glownia, J. M. Koglin, H. T. Lemke, M. Messerschmidt, K. Nass, S. Nelson, I. Schlichting, R. L. Shoeman, Yu. V. Shvyd'ko, M. Sikorski, S. Song, S. Stoupin, S. Terentyev, G. J. Williams, D. Zhu, A. Robert, S. Boutet
Citation: Feng, Y. et al., 2015. Demonstration of simultaneous experiments using thin crystal multiplexing at the Linac Coherent Light Source. J Synchrotron Rad, 22(3), pp.626-633.
Type: Journal-article
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Citation: Aceti, D.J. et al., 2015. Expression platforms for producing eukaryotic proteins: a comparison of E. coli cell-based and wheat germ cell-free synthesis, affinity and solubility tags, and cloning strategies. Journal of Structural and Functional Genomics, 16(2), pp.67-80.
Type: Journal-article
Authors: Dario Mizrachi, Yujie Chen, Jiayan Liu, Hwei-Ming Peng, Ailong Ke, Lois Pollack, Raymond J. Turner, Richard J. Auchus, Matthew P. DeLisa
Citation: Mizrachi, D. et al., 2015. Making water-soluble integral membrane proteins in vivo using an amphipathic protein fusion strategy. Nature Communications, 6, p.6826.
Type: Journal-article
Authors: Yoav Shechtman, Yonina C. Eldar, Oren Cohen, Henry Nicholas Chapman, Jianwei Miao, Mordechai Segev
Citation: Shechtman, Y. et al., 2015. Phase Retrieval with Application to Optical Imaging: A contemporary overview. IEEE Signal Processing Magazine, 32(3), pp.87-109.
Type: Journal-article
Authors: Jinhai Chen, Adam Kell, Khem Acharya, Christopher Kupitz, Petra Fromme, Ryszard Jankowiak
Citation: Chen, J. et al., 2015. Critical assessment of the emission spectra of various photosystem II core complexes. Photosynthesis Research, 124(3), pp.253-265.
Type: Journal-article
Authors: Henry van den Bedem, James S Fraser
Citation: Van den Bedem, H. & Fraser, J.S., 2015. Integrative, dynamic structural biology at atomic resolution--it's about time. Nat Meth, 12(4), pp.307-318.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Dandan Zhang, Zhan-Guo Gao, Kaihua Zhang, Evgeny Kiselev, Steven Crane, Jiang Wang, Silvia Paoletta, Cuiying Yi, Limin Ma, Wenru Zhang, Gye Won Han, Hong Liu, Vadim Cherezov, Vsevolod Katritch, Hualiang Jiang, Raymond C. Stevens, Kenneth A. Jacobson, Qiang Zhao, Beili Wu
Citation: Zhang, D. et al., 2015. Two disparate ligand-binding sites in the human P2Y1 receptor. Nature, 520(7547), pp.317-321.
Type: Journal-article
Authors: Lindsay L Traeger, Jeremy D Volkening, Howell Moffett, Jason R Gallant, Po-Hao Chen, Carl D Novina, George N Phillips, Rene Anand, Gregg B Wells, Matthew Pinch, Robert Güth, Graciela A Unguez, James S Albert, Harold Zakon, Michael R Sussman, Manoj P Samanta
Citation: Traeger, L.L. et al., 2015. Unique patterns of transcript and miRNA expression in the South American strong voltage electric eel (Electrophorus electricus). BMC Genomics, 16(1).
Type: Journal-article
Authors: Gustavo Fenalti, Enrique E. Abola, Chong Wang, Beili Wu, Vadim Cherezov
Citation: Fenalti, G. et al., 2015. Fluorescence Recovery After Photobleaching in Lipidic Cubic Phase (LCP-FRAP). Membrane Proteins--Engineering, Purification and Crystallization, pp.417-437.
Type: Book-chapter
Authors: Bahige G. Abdallah, Shatabdi Roy-Chowdhury, Jesse Coe, Petra Fromme, Alexandra Ros
Citation: Abdallah, B.G. et al., 2015. High Throughput Protein Nanocrystal Fractionation in a Microfluidic Sorter. Anal. Chem., 87(8), pp.4159-4167.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Daniel A Keedy, Lillian R Kenner, Matthew Warkentin, Rahel Woldeyes, Michael C Thompson, Aaron S Brewster, Andrew H Van Benschoten, Elizabeth L Baxter, Jesse B Hopkins, Monarin Uervirojnangkoorn, Scott E McPhillps, Jinhu Song, Roberto Alonso-Mori, James M Holton, William I Weis, Axel T Brunger, S. Michael Soltis, Henrik Lemke, Ana Gonzalez, Nicholas K Sauter, Aina E Cohen, Henry van den Bedem, Robert E Thorne, James Fraser
Citation: Keedy, D.A. et al., 2015. Mapping the Conformational Landscape of a Dynamic Enzyme by XFEL and Multitemperature Crystallography.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: P.F. Lyman, V.L. Shneerson, R. Fung, R.J. Harder, S.S. Parihar, H.T. Johnson-Steigelman, D.K. Saldin
Citation: Lyman, P.F. et al., 2008. Solution to the phase problem for surface X-ray diffraction. Acta Crystallographica Section A Foundations of Crystallography, 64(a1), pp.C109-C109.
Type: Journal-article
Authors: Alexander Heifetz, Gebhard F. X. Schertler, Roland Seifert, Christopher G. Tate, Patrick M. Sexton, Vsevolod V. Gurevich, Daniel Fourmy, Vadim Cherezov, Fiona H. Marshall, R. Ian Storer, Isabel Moraes, Irina G. Tikhonova, Christofer S. Tautermann, Peter Hunt, Tom Ceska, Simon Hodgson, Mike J. Bodkin, Shweta Singh, Richard J. Law, Philip C. Biggin
Citation: Heifetz, A. et al., 2015. GPCR structure, function, drug discovery and crystallography: report from Academia-Industry International Conference (UK Royal Society) Chicheley Hall, 1-2 September 2014. Naunyn-Schmiedeberg's Arch Pharmacol, 388(8), pp.883-903.
Type: Journal-article
Authors: M. Prasciolu, A. F. G. Leontowich, J. Krzywinski, A. Andrejczuk, H. N. Chapman, S. Bajt
Citation: Prasciolu, M. et al., 2015. Fabrication of wedged multilayer Laue lenses. Opt. Mater. Express, 5(4), p.748.
Type: Journal-article
Authors: Justin D Flory, Trey Johnson, Chad R Simmons, Su Lin, Giovanna Ghirlanda, Petra Fromme
Citation: Flory, J.D. et al., 2014. Purification and assembly of thermostable Cy5 labeled γ-PNAs into a 3D DNA nanocage. Artificial DNA: PNA & XNA, 5(3), p.e992181.
Type: Journal-article
Authors: Helen M. Ginn, Marc Messerschmidt, Xiaoyun Ji, Hanwen Zhang, Danny Axford, Richard J. Gildea, Graeme Winter, Aaron S. Brewster, Johan Hattne, Armin Wagner, Jonathan M. Grimes, Gwyndaf Evans, Nicholas K. Sauter, Geoff Sutton, David I. Stuart
Citation: Ginn, H.M. et al., 2015. Structure of CPV17 polyhedrin determined by the improved analysis of serial femtosecond crystallographic data. Nat Comms, 6, p.6435.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Sol M. Gruner, Eaton E. Lattman
Citation: Gruner, S.M. & Lattman, E.E., 2015. Biostructural Science Inspired by Next-Generation X-Ray Sources. Annual Review of Biophysics, 44(1), pp.33-51.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: S. M. Vinko, O. Ciricosta, T. R. Preston, D. S. Rackstraw, C.R.D. Brown, T. Burian, J. Chalupský, B. I. Cho, H.-K. Chung, K. Engelhorn, R. W. Falcone, R. Fiokovinini, V. Hájková, P. A. Heimann, L. Juha, H. J. Lee, R. W. Lee, M. Messerschmidt, B. Nagler, W. Schlotter, J. J. Turner, L. Vysin, U. Zastrau, J. S. Wark
Citation: Vinko, S.M. et al., 2015. Investigation of femtosecond collisional ionization rates in a solid-density aluminium plasma. Nature Communications, 6, p.6397.
Type: Journal-article
Authors: Tomas Ekeberg, Martin Svenda, Chantal Abergel, Filipe R. N. C. Maia, Virginie Seltzer, Jean-Michel Claverie, Max Hantke, Olof Jönsson, Carl Nettelblad, Gijs van der Schot, Mengning Liang, Daniel P. DePonte, Anton Barty, M. Marvin Seibert, Bianca Iwan, Inger Andersson, N. Duane Loh, Andrew V. Martin, Henry Chapman, Christoph Bostedt, John D. Bozek, Ken R. Ferguson, Jacek Krzywinski, Sascha W. Epp, Daniel Rolles, Artem Rudenko, Robert Hartmann, Nils Kimmel, Janos Hajdu
Citation: Ekeberg, T. et al., 2015. Three-Dimensional Reconstruction of the Giant Mimivirus Particle with an X-Ray Free-Electron Laser. Physical Review Letters, 114(9).
Type: Journal-article
Authors: Pavithra Venkatagopalan, Sasha M. Daskalova, Lisa A. Lopez, Kelly A. Dolezal, Brenda G. Hogue
Citation: Venkatagopalan, P. et al., 2015. Coronavirus envelope (E) protein remains at the site of assembly. Virology, 478, pp.75-85.
Type: Journal-article
Authors: Alice Soragni, Shida Yousefi, Christina Stoeckle, Angela B. Soriaga, Michael R. Sawaya, Evelyne Kozlowski, Inès Schmid, Susanne Radonjic-Hoesli, Sebastien Boutet, Garth J. Williams, Marc Messerschmidt, M. Marvin Seibert, Duilio Cascio, Nadia A. Zatsepin, Manfred Burghammer, Christian Riekel, Jacques-Philippe Colletier, Roland Riek, David S. Eisenberg, Hans-Uwe Simon
Citation: Soragni, A. et al., 2015. Toxicity of Eosinophil MBP Is Repressed by Intracellular Crystallization and Promoted by Extracellular Aggregation. Molecular Cell, 57(6), pp.1011-1021.
Type: Journal-article
Authors: Fernanda Camacho-Alanis, Alexandra Ros
Citation: Camacho-Alanis, F. & Ros, A., 2015. Protein dielectrophoresis and the link to dielectric properties. Bioanalysis, 7(3), pp.353-371.
Type: Journal-article
Authors: Karol Nass, Lutz Foucar, Thomas R. M. Barends, Elisabeth Hartmann, Sabine Botha, Robert L. Shoeman, R. Bruce Doak, Roberto Alonso-Mori, Andrew Aquila, Saša Bajt, Anton Barty, Richard Bean, Kenneth R. Beyerlein, Maike Bublitz, Nikolaj Drachmann, Jonas Gregersen, H. Olof Jönsson, Wolfgang Kabsch, Stephan Kassemeyer, Jason E. Koglin, Michael Krumrey, Daniel Mattle, Marc Messerschmidt, Poul Nissen, Linda Reinhard, Oleg Sitsel, Dimosthenis Sokaras, Garth J. Williams, Stefan Hau-Riege, Nicusor Timneanu, Carl Caleman, Henry N. Chapman, Sébastien Boutet, Ilme Schlichting
Citation: Nass, K. et al., 2015. Indications of radiation damage in ferredoxin microcrystals using high-intensity X-FEL beams. J Synchrotron Rad, 22(2), pp.225-238.
Type: Journal-article
Authors: Gustavo Fenalti, Nadia A Zatsepin, Cecilia Betti, Patrick Giguere, Gye Won Han, Andrii Ishchenko, Wei Liu, Karel Guillemyn, Haitao Zhang, Daniel James, Dingjie Wang, Uwe Weierstall, John C H Spence, Sébastien Boutet, Marc Messerschmidt, Garth J Williams, Cornelius Gati, Oleksandr M Yefanov, Thomas A White, Dominik Oberthuer, Markus Metz, Chun Hong Yoon, Anton Barty, Henry N Chapman, Shibom Basu, Jesse Coe, Chelsie E Conrad, Raimund Fromme, Petra Fromme, Dirk Tourwé, Peter W Schiller, Bryan L Roth, Steven Ballet, Vsevolod Katritch, Raymond C Stevens, Vadim Cherezov
Citation: Fenalti, G. et al., 2015. Structural basis for bifunctional peptide recognition at human δ-opioid receptor. Nature Structural & Molecular Biology, 22(3), pp.265-268.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Richard A. Kirian, Richard J. Bean, Kenneth R. Beyerlein, Miriam Barthelmess, Chun Hong Yoon, Fenglin Wang, Flavio Capotondi, Emanuele Pedersoli, Anton Barty, Henry N. Chapman
Citation: Kirian, R.A. et al., 2015. Direct Phasing of Finite Crystals Illuminated with a Free-Electron Laser. Physical Review X, 5(1).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Gijs van der Schot, Martin Svenda, Filipe R. N. C. Maia, Max Hantke, Daniel P. DePonte, M. Marvin Seibert, Andrew Aquila, Joachim Schulz, Richard Kirian, Mengning Liang, Francesco Stellato, Bianca Iwan, Jakob Andreasson, Nicusor Timneanu, Daniel Westphal, F. Nunes Almeida, Dusko Odic, Dirk Hasse, Gunilla H. Carlsson, Daniel S. D. Larsson, Anton Barty, Andrew V. Martin, Sebastian Schorb, Christoph Bostedt, John D. Bozek, Daniel Rolles, Artem Rudenko, Sascha Epp, Lutz Foucar, Benedikt Rudek, Robert Hartmann, Nils Kimmel, Peter Holl, Lars Englert, Ne-Te Duane Loh, Henry N. Chapman, Inger Andersson, Janos Hajdu, Tomas Ekeberg
Citation: Van der Schot, G. et al., 2015. Imaging single cells in a beam of live cyanobacteria with an X-ray laser. Nat Comms, 6, p.5704.
Type: Journal-article
Authors: Benjamin A Barad, Nathaniel Echols, Ray Yu-Ruei Wang, Yifan Cheng, Frank DiMaio, Paul D Adams, James S Fraser
Citation: Barad, B.A. et al., 2015. Side-chain-directed model and map validation for 3D Electron Cryomicroscopy.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Lorenzo Galli, Sang-Kil Son, Thomas A. White, Robin Santra, Henry N. Chapman, Max H. Nanao
Citation: Galli, L. et al., 2015. Towards RIP using free-electron laser SFX data. J Synchrotron Rad, 22(2), pp.249-255.
Type: Journal-article
Authors: Jesse B. Hopkins, Andrea M. Katz, Steve P. Meisburger, Matthew A. Warkentin, Robert E. Thorne, Lois Pollack
Citation: Hopkins, J.B. et al., 2015. A microfabricated fixed path length silicon sample holder improves background subtraction for cryoSAXS. Journal of Applied Crystallography, 48(1), pp.227-237.
Type: Journal-article
Authors: Euiyoung Bae, Sojin Moon, George N. Phillips
Citation: Bae, E., Moon, S. & Phillips, G.N., 2015. Molecular dynamics simulation of a psychrophilic adenylate kinase. Journal of the Korean Society for Applied Biological Chemistry, 58(2), pp.209-212.
Type: Journal-article
Authors: L. Qin, I. Kufareva, L. G. Holden, C. Wang, Y. Zheng, C. Zhao, G. Fenalti, H. Wu, G. W. Han, V. Cherezov, R. Abagyan, R. C. Stevens, T. M. Handel
Citation: Qin, L. et al., 2015. Crystal structure of the chemokine receptor CXCR4 in complex with a viral chemokine. Science, 347(6226), pp.1117-1122.
Type: Journal-article
Authors: Carl Caleman, Nicuşor Tîmneanu, Andrew V. Martin, H. Olof Jönsson, Andrew Aquila, Anton Barty, Howard A. Scott, Thomas A. White, Henry N. Chapman
Citation: Caleman, C. et al., 2015. Ultrafast self-gating Bragg diffraction of exploding nanocrystals in an X-ray laser. Optics Express, 23(2), p.1213.
Type: Journal-article
Authors: E.C. Mattson, K. Pande, S. Cui, M. Weinert, J.H. Chen, C.J. Hirschmugl
Citation: Mattson, E.C. et al., 2015. Investigation of NO2 adsorption on reduced graphene oxide. Chemical Physics Letters, 622, pp.86-91.
Type: Journal-article
Authors: Tomáš Burian, Věra Hájková, Jaromír Chalupský, Luděk Vyšín, Pavel Boháček, Martin Přeček, Jan Wild, Cigdem Özkan, Nicola Coppola, Shafagh Dastjani Farahani, Joachim Schulz, Harald Sinn, Thomas Tschentscher, Jérôme Gaudin, Saša Bajt, Kai Tiedtke, Sven Toleikis, Henry N. Chapman, Rolf A. Loch, Marek Jurek, Ryszard Sobierajski, Jacek Krzywinski, Stefan Moeller, Marion Harmand, Germano Galasso, Mitsuru Nagasono, Karel Saskl, Pavol Sovák, Libor Juha
Citation: Burian, T. et al., 2015. Soft x-ray free-electron laser induced damage to inorganic scintillators. Opt. Mater. Express, 5(2), p.254.
Type: Journal-article
Authors: Alexandre Urzhumtsev, Pavel Afonine, Andrew H Van Benschoten, James Fraser, Paul D Adams
Citation: Urzhumtsev, A. et al., 2015. From deep TLS validation to ensembles of atomic models built from elemental motions.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Andrew Van Benschoten, Pavel Afonine, Thomas Terwilliger, Michael Wall, Colin Jackson, Nicholas Sauter, Paul Adams, Alexandre Urzhumtsev, James Fraser
Citation: Van Benschoten, A. et al., 2015. Predicting X-ray Diffuse Scattering from Translation Libration Screw Structural Ensembles.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Przemyslaw Nogly, Daniel James, Dingjie Wang, Thomas A. White, Nadia Zatsepin, Anastasya Shilova, Garrett Nelson, Haiguang Liu, Linda Johansson, Michael Heymann, Kathrin Jaeger, Markus Metz, Cecilia Wickstrand, Wenting Wu, Petra Båth, Peter Berntsen, Dominik Oberthuer, Valerie Panneels, Vadim Cherezov, Henry Chapman, Gebhard Schertler, Richard Neutze, John Spence, Isabel Moraes, Manfred Burghammer, Joerg Standfuss, Uwe Weierstall
Citation: Nogly, P. et al., 2015. Lipidic cubic phase serial millisecond crystallography using synchrotron radiation. IUCrJ, 2(2), pp.168-176.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Gira Bhabha, Justin T. Biel, James S. Fraser
Citation: Bhabha, G., Biel, J.T. & Fraser, J.S., 2015. Keep on Moving: Discovering and Perturbing the Conformational Dynamics of Enzymes. Acc. Chem. Res., 48(2), pp.423-430.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Thomas D. Grant, Joseph R. Luft, Lester G. Carter, Tsutomu Matsui, Thomas M. Weiss, Anne Martel, Edward H. Snell
Citation: Grant, T.D. et al., 2015. The accurate assessment of small-angle X-ray scattering data. Acta Crystallogr D, 71(1), pp.45-56.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Vignir Isberg, Chris de Graaf, Andrea Bortolato, Vadim Cherezov, Vsevolod Katritch, Fiona H. Marshall, Stefan Mordalski, Jean-Philippe Pin, Raymond C. Stevens, Gerrit Vriend, David E. Gloriam
Citation: Isberg, V. et al., 2015. Generic GPCR residue numbers - aligning topology maps while minding the gaps. Trends in Pharmacological Sciences, 36(1), pp.22-31.
Type: Journal-article
Authors: Jason Tenboer, Shibom Basu, Nadia Zatsepin, Kanupriya Pande, Despina Milathianaki, Matthias Frank, Mark Hunter, Sébastien Boutet, Garth J. Williams, Jason E. Koglin, Dominik Oberthuer, Michael Heymann, Christopher Kupitz, Chelsie Conrad, Jesse Coe, Shatabdi Roy-Chowdhury, Uwe Weierstall, Daniel James, Dingjie Wang, Thomas Grant, Anton Barty, Oleksandr Yefanov, Jennifer Scales, Cornelius Gati, Carolin Seuring, Vukica Srajer, Robert Henning, Peter Schwander, Raimund Fromme, Abbas Ourmazd, Keith Moffat, Jasper J. Van Thor, John C. H. Spence, Petra Fromme, Henry N. Chapman, Marius Schmidt
Citation: Tenboer, J. et al., 2014. Time-resolved serial crystallography captures high-resolution intermediates of photoactive yellow protein. Science, 346(6214), pp.1242-1246.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Ali Dashti, Peter Schwander, Robert Langlois, Russell Fung, Wen Li, Ahmad Hosseinizadeh, Hstau Y. Liao, Jesper Pallesen, Gyanesh Sharma, Vera A. Stupina, Anne E. Simon, Jonathan D. Dinman, Joachim Frank, Abbas Ourmazd
Citation: Dashti, A. et al., 2014. Trajectories of the ribosome as a Brownian nanomachine. Proc Natl Acad Sci USA, 111(49), pp.17492-17497.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: W. Helml, A. R. Maier, W. Schweinberger, I. Grguraš, P. Radcliffe, G. Doumy, C. Roedig, J. Gagnon, M. Messerschmidt, S. Schorb, C. Bostedt, F. Grüner, L. F. DiMauro, D. Cubaynes, J. D. Bozek, Th. Tschentscher, J. T. Costello, M. Meyer, R. Coffee, S. Düsterer, A. L. Cavalieri, R. Kienberger
Citation: Helml, W. et al., 2014. Measuring the temporal structure of few-femtosecond free-electron laser X-ray pulses directly in the time domain. Nature Photonics, 8(12), pp.950-957.
Type: Journal-article
Authors: Yahli Lorch, Barbara Maier-Davis, Roger D. Kornberg
Citation: Lorch, Y., Maier-Davis, B. & Kornberg, R.D., 2014. Role of DNA sequence in chromatin remodeling and the formation of nucleosome-free regions. Genes & Development, 28(22), pp.2492-2497.
Type: Journal-article
Authors: Kenneth R. Beyerlein, Christian Jooss, Anton Barty, Richard Bean, Sébastien Boutet, Sarnjeet S. Dhesi, R. Bruce Doak, Michael Först, Lorenzo Galli, Richard A. Kirian, Joseph Kozak, Michael Lang, Roman Mankowsky, Marc Messerschmidt, John C. H. Spence, Dingjie Wang, Uwe Weierstall, Thomas A. White, Garth J. Williams, Oleksandr Yefanov, Nadia A. Zatsepin, Andrea Cavalleri, Henry N. Chapman
Citation: Beyerlein, K.R. et al., 2014. Trace phase detection and strain characterization from serial X-ray free-electron laser crystallography of a Pr0.5Ca0.5MnO3 powder. Powder Diffraction, 30(S1), pp.S25-S30.
Type: Journal-article
Authors: Paolo Rossi, Lei Shi, Gaohua Liu, Christopher M. Barbieri, Hsiau-Wei Lee, Thomas D. Grant, Joseph R. Luft, Rong Xiao, Thomas B. Acton, Edward H. Snell, Gaetano T. Montelione, David Baker, Oliver F. Lange, Nikolaos G. Sgourakis
Citation: Rossi, P. et al., 2014. A hybrid NMR/SAXS-based approach for discriminating oligomeric protein interfaces using Rosetta. Proteins: Structure, Function, and Bioinformatics, 83(2), pp.309-317.
Type: Journal-article
Authors: Asuka Nakano, Fernanda Camacho-Alanis, Alexandra Ros
Citation: Nakano, A., Camacho-Alanis, F. & Ros, A., 2015. Insulator-based dielectrophoresis with β-galactosidase in nanostructured devices. Analyst, 140(3), pp.860-868.
Type: Journal-article
Authors: Aina E. Cohen, S. Michael Soltis, Ana González, Laura Aguila, Roberto Alonso-Mori, Christopher O. Barnes, Elizabeth L. Baxter, Winnie Brehmer, Aaron S. Brewster, Axel T. Brunger, Guillermo Calero, Joseph F. Chang, Matthieu Chollet, Paul Ehrensberger, Thomas L. Eriksson, Yiping Feng, Johan Hattne, Britt Hedman, Michael Hollenbeck, James M. Holton, Stephen Keable, Brian K. Kobilka, Elena G. Kovaleva, Andrew C. Kruse, Henrik T. Lemke, Guowu Lin, Artem Y. Lyubimov, Aashish Manglik, Irimpan I. Mathews, Scott E. McPhillips, Silke Nelson, John W. Peters, Nicholas K. Sauter, Clyde A. Smith, Jinhu Song, Hilary P. Stevenson, Yingssu Tsai, Monarin Uervirojnangkoorn, Vladimir Vinetsky, Soichi Wakatsuki, William I. Weis, Oleg A. Zadvornyy, Oliver B. Zeldin, Diling Zhu, Keith O. Hodgson
Citation: Cohen, A.E. et al., 2014. Goniometer-based femtosecond crystallography with X-ray free electron lasers. Proceedings of the National Academy of Sciences, 111(48), pp.17122-17127.
Type: Journal-article
Authors: Mi Seul Park, Eduard Bitto, Kyung Rok Kim, Craig A. Bingman, Mitchell D. Miller, Hyun-Jung Kim, Byung Woo Han, George N. Phillips
Citation: Park, M.S. et al., 2014. Crystal Structure of Human Protein N-Terminal Glutamine Amidohydrolase, an Initial Component of the N-End Rule Pathway T. J. Boggon, ed. PLoS ONE, 9(10), p.e111142.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: R. Sophia Weerth, Karolina Michalska, Craig A. Bingman, Ragothaman M. Yennamalli, Hui Li, Robert Jedrzejczak, Fengbin Wang, Gyorgy Babnigg, Andrzej Joachimiak, Michael G. Thomas, George N. Phillips
Citation: Weerth, R.S. et al., 2014. Structure of a cupin protein Plu4264 from Photorhabdus luminescens subsp. laumondii TTO1 at 1.35 ... resolution. Proteins: Structure, Function, and Bioinformatics, 83(2), pp.383-388.
Type: Journal-article
Authors: Ganesh Subramanian, Shibom Basu, Haiguang Liu, Jian-Min Zuo, John C.H. Spence
Citation: Subramanian, G. et al., 2015. Solving protein nanocrystals by cryo-EM diffraction: Multiple scattering artifacts. Ultramicroscopy, 148, pp.87-93.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Dingjie Wang, Uwe Weierstall, Lois Pollack, John Spence
Citation: Wang, D. et al., 2014. Double-focusing mixing jet for XFEL study of chemical kinetics. J Synchrotron Rad, 21(6), pp.1364-1366.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Pilarisetty Tarakeshwar, Julio L. Palma, Gregory P. Holland, Petra Fromme, Jeffery L. Yarger, Vladimiro Mujica
Citation: Tarakeshwar, P. et al., 2014. Probing the Nature of Charge Transfer at Nano-Bio Interfaces: Peptides on Metal Oxide Nanoparticles. The Journal of Physical Chemistry Letters, 5(20), pp.3555-3559.
Type: Journal-article
Authors: Hung T. Nguyen, Suzette A. Pabit, Steve P. Meisburger, Lois Pollack, David A. Case
Citation: Nguyen, H.T. et al., 2014. Accurate small and wide angle x-ray scattering profiles from atomic models of proteins and nucleic acids. The Journal of Chemical Physics, 141(22), p.22D508.
Type: Journal-article
Authors: Brianna B. Williams, Andrew H. Van Benschoten, Peter Cimermancic, Mohamed S. Donia, Michael Zimmermann, Mao Taketani, Atsushi Ishihara, Purna C. Kashyap, James S. Fraser, Michael A. Fischbach
Citation: Williams, B.B. et al., 2014. Discovery and Characterization of Gut Microbiota Decarboxylases that Can Produce the Neurotransmitter Tryptamine. Cell Host & Microbe, 16(4), pp.495-503.
Type: Journal-article
Authors: Haiguang Liu, John C.H. Spence
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Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Geoffrey K. Feld, Sahar El-Etr, Michele H. Corzett, Mark S. Hunter, Kamila Belhocine, Denise M. Monack, Matthias Frank, Brent W. Segelke, Amy Rasley
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Type: Journal-article
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Citation: Pardini, T. et al., 2014. Silicon single crystal as back-reflector for high-intensity hard x-rays S. P. Hau-Riege, S. P. Moeller, & M. Yabashi, eds. X-Ray Free-Electron Lasers: Beam Diagnostics, Beamline Instrumentation, and Applications II.
Type: Proceedings-article
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Citation: Bionta, M.R. et al., 2014. Spectral encoding method for measuring the relative arrival time between x-ray/optical pulses. Review of Scientific Instruments, 85(8), p.083116.
Type: Journal-article
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Citation: Karkehabadi, S. et al., 2014. Biochemical Characterization and Crystal Structures of a Fungal Family 3  -Glucosidase, Cel3A from Hypocrea jecorina. Journal of Biological Chemistry, 289(45), pp.31624-31637.
Type: Journal-article
Authors: Kevin K. Desai, Craig A. Bingman, Chin L. Cheng, George N. Phillips, Ronald T. Raines
Citation: Desai, K.K. et al., 2014. Structure of RNA 3′-phosphate cyclase bound to substrate RNA. RNA, 20(10), pp.1560-1566.
Type: Journal-article
Authors: K. Tiedtke, A. A. Sorokin, U. Jastrow, P. Juranić, S. Kreis, N. Gerken, M. Richter, U. Arp, Y. Feng, D. Nordlund, R. Soufli, M. Fernández-Perea, L. Juha, P. Heimann, B. Nagler, H. J. Lee, S. Mack, M. Cammarata, O. Krupin, M. Messerschmidt, M. Holmes, M. Rowen, W. Schlotter, S. Moeller, J. J. Turner
Citation: Tiedtke, K. et al., 2014. Absolute pulse energy measurements of soft x-rays at the Linac Coherent Light Source. Optics Express, 22(18), p.21214.
Type: Journal-article
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Citation: Gong, Z. et al., 2014. Recombinant expression, purification, and biophysical characterization of the transmembrane and membrane proximal domains of HIV-1 gp41. Protein Science, 23(11), pp.1607-1618.
Type: Journal-article
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Citation: Azubel, M. et al., 2014. Electron microscopy of gold nanoparticles at atomic resolution. Science, 345(6199), pp.909-912.
Type: Journal-article
Authors: Ho-Hsien Lee, Irene Cherni, HongQi Yu, Raimund Fromme, Jeffrey D. Doran, Ingo Grotjohann, Michele Mittman, Shibom Basu, Arpan Deb, Katerina Dörner, Andrew Aquila, Anton Barty, Sébastien Boutet, Henry N. Chapman, R. Bruce Doak, Mark S. Hunter, Daniel James, Richard A. Kirian, Christopher Kupitz, Robert M. Lawrence, Haiguang Liu, Karol Nass, Ilme Schlichting, Kevin E. Schmidt, M. Marvin Seibert, Robert L. Shoeman, John C. H. Spence, Francesco Stellato, Uwe Weierstall, Garth J. Williams, Chunhong Yoon, Dingjie Wang, Nadia A. Zatsepin, Brenda G. Hogue, Nobuyuki Matoba, Petra Fromme, Tsafrir S. Mor
Citation: Lee, H.-H. et al., 2014. Expression, purification and crystallization of CTB-MPR, a candidate mucosal vaccine component against HIV-1. IUCrJ, 1(5), pp.305-317.
Type: Journal-article
Authors: M. R. Sawaya, D. Cascio, M. Gingery, J. Rodriguez, L. Goldschmidt, J.-P. Colletier, M. M. Messerschmidt, S. Boutet, J. E. Koglin, G. J. Williams, A. S. Brewster, K. Nass, J. Hattne, S. Botha, R. B. Doak, R. L. Shoeman, D. P. DePonte, H.-W. Park, B. A. Federici, N. K. Sauter, I. Schlichting, D. S. Eisenberg
Citation: Sawaya, M.R. et al., 2014. Protein crystal structure obtained at 2.9 A resolution from injecting bacterial cells into an X-ray free-electron laser beam. Proceedings of the National Academy of Sciences, 111(35), pp.12769-12774.
Type: Journal-article
Authors: S. Stern, L. Holmegaard, F. Filsinger, A. Rouzée, A. Rudenko, P. Johnsson, A. V. Martin, A. Barty, C. Bostedt, J. Bozek, R. Coffee, S. Epp, B. Erk, L. Foucar, R. Hartmann, N. Kimmel, K-U. Kühnel, J. Maurer, M. Messerschmidt, B. Rudek, D. Starodub, J. Thøgersen, G. Weidenspointner, T. A. White, H. Stapelfeldt, D. Rolles, H. N. Chapman, J. Küpper
Citation: Stern, S. et al., 2014. Toward atomic resolution diffractive imaging of isolated molecules with X-ray free-electron lasers. Faraday Discuss., 171, pp.393-418.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Wei Liu, Andrii Ishchenko, Vadim Cherezov
Citation: Liu, W., Ishchenko, A. & Cherezov, V., 2014. Preparation of microcrystals in lipidic cubic phase for serial femtosecond crystallography. Nature Protocols, 9(9), pp.2123-2134.
Type: Journal-article
Authors: Mark S. Hunter, Brent Segelke, Marc Messerschmidt, Garth J. Williams, Nadia A. Zatsepin, Anton Barty, W. Henry Benner, David B. Carlson, Matthew Coleman, Alexander Graf, Stefan P. Hau-Riege, Tommaso Pardini, M. Marvin Seibert, James Evans, Sébastien Boutet, Matthias Frank
Citation: Hunter, M.S. et al., 2014. Fixed-target protein serial microcrystallography with an x-ray free electron laser. Scientific Reports, 4.
Type: Journal-article
Authors: David Arnlund, Linda C Johansson, Cecilia Wickstrand, Anton Barty, Garth J Williams, Erik Malmerberg, Jan Davidsson, Despina Milathianaki, Daniel P DePonte, Robert L Shoeman, Dingjie Wang, Daniel James, Gergely Katona, Sebastian Westenhoff, Thomas A White, Andrew Aquila, Sadia Bari, Peter Berntsen, Mike Bogan, Tim Brandt van Driel, R Bruce Doak, Kasper Skov Kjær, Matthias Frank, Raimund Fromme, Ingo Grotjohann, Robert Henning, Mark S Hunter, Richard A Kirian, Irina Kosheleva, Christopher Kupitz, Mengning Liang, Andrew V Martin, Martin Meedom Nielsen, Marc Messerschmidt, M Marvin Seibert, Jennie Sjöhamn, Francesco Stellato, Uwe Weierstall, Nadia A Zatsepin, John C H Spence, Petra Fromme, Ilme Schlichting, Sébastien Boutet, Gerrit Groenhof, Henry N Chapman, Richard Neutze
Citation: Arnlund, D. et al., 2014. Visualizing a protein quake with time-resolved X-ray scattering at a free-electron laser. Nature Methods, 11(9), pp.923-926.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Rahel A Woldeyes, David A Sivak, James S Fraser
Citation: Woldeyes, R.A., Sivak, D.A. & Fraser, J.S., 2014. E pluribus unum, no more: from one crystal, many conformations. Current Opinion in Structural Biology, 28, pp.56-62.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Adam J Book, Ragothaman M Yennamalli, Taichi E Takasuka, Cameron R Currie, George N Phillips, Brian G Fox
Citation: Book, A.J. et al., 2014. Evolution of substrate specificity in bacterial AA10 lytic polysaccharide monooxygenases. Biotechnology for Biofuels, 7(1), p.109.
Type: Journal-article
Authors: Hongnan Cao, Jonathan D. Walton, Phil Brumm, George N. Phillips
Citation: Cao, H. et al., 2014. Structure and Substrate Specificity of a Eukaryotic Fucosidase fromFusarium graminearum. Journal of Biological Chemistry, 289(37), pp.25624-25638.
Type: Journal-article
Authors: Sherif I. Elshahawi, Theresa A. Ramelot, Jayaraman Seetharaman, Jing Chen, Shanteri Singh, Yunhuang Yang, Kari Pederson, Madan K. Kharel, Rong Xiao, Scott Lew, Ragothaman M. Yennamalli, Mitchell D. Miller, Fengbin Wang, Liang Tong, Gaetano T. Montelione, Michael A. Kennedy, Craig A. Bingman, Haining Zhu, George N. Phillips, Jon S. Thorson
Citation: Elshahawi, S.I. et al., 2014. Structure-Guided Functional Characterization of Enediyne Self-Sacrifice Resistance Proteins, CalU16 and CalU19. ACS Chemical Biology, 9(10), pp.2347-2358.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Rebecca Boll, Arnaud Rouzée, Marcus Adolph, Denis Anielski, Andrew Aquila, Sadia Bari, Cédric Bomme, Christoph Bostedt, John D. Bozek, Henry N. Chapman, Lauge Christensen, Ryan Coffee, Niccola Coppola, Sankar De, Piero Decleva, Sascha W. Epp, Benjamin Erk, Frank Filsinger, Lutz Foucar, Tais Gorkhover, Lars Gumprecht, André Hömke, Lotte Holmegaard, Per Johnsson, Jens S. Kienitz, Thomas Kierspel, Faton Krasniqi, Kai-Uwe Kühnel, Jochen Maurer, Marc Messerschmidt, Robert Moshammer, Nele L. M. Müller, Benedikt Rudek, Evgeny Savelyev, Ilme Schlichting, Carlo Schmidt, Frank Scholz, Sebastian Schorb, Joachim Schulz, Jörn Seltmann, Mauro Stener, Stephan Stern, Simone Techert, Jan Thøgersen, Sebastian Trippel, Jens Viefhaus, Marc Vrakking, Henrik Stapelfeldt, Jochen Küpper, Joachim Ullrich, Artem Rudenko, Daniel Rolles
Citation: Boll, R. et al., 2014. Imaging molecular structure through femtosecond photoelectron diffraction on aligned and oriented gas-phase molecules. Faraday Discuss., 171, pp.57-80.
Type: Journal-article
Authors: Alexandre Gidon, Mohammad M Al-Bataineh, Frederic G Jean-Alphonse, Hilary P Stevenson, Tomoyuki Watanabe, Claire Louet, Ashok Khatri, Guillermo Calero, Núria M Pastor-Soler, Thomas J Gardella, Jean-Pierre Vilardaga
Citation: Gidon, A. et al., 2014. Endosomal GPCR signaling turned off by negative feedback actions of PKA and v-ATPase. Nature Chemical Biology, 10(9), pp.707-709.
Type: Journal-article
Authors: Guillermo Calero, Aina E. Cohen, Joseph R. Luft, Janet Newman, Edward H. Snell
Citation: Calero, G. et al., 2014. Identifying, studying and making good use of macromolecular crystals. Acta Crystallogr Sect F Struct Biol Cryst Commun, 70(8), pp.993-1008.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Katrin R. Siefermann, Chaitanya D. Pemmaraju, Stefan Neppl, Andrey Shavorskiy, Amy A. Cordones, Josh Vura-Weis, Daniel S. Slaughter, Felix P. Sturm, Fabian Weise, Hendrik Bluhm, Matthew L. Strader, Hana Cho, Ming-Fu Lin, Camila Bacellar, Champak Khurmi, Jinghua Guo, Giacomo Coslovich, Joseph S. Robinson, Robert A. Kaindl, Robert W. Schoenlein, Ali Belkacem, Daniel M. Neumark, Stephen R. Leone, Dennis Nordlund, Hirohito Ogasawara, Oleg Krupin, Joshua J. Turner, William F. Schlotter, Michael R. Holmes, Marc Messerschmidt, Michael P. Minitti, Sheraz Gul, Jin Z. Zhang, Nils Huse, David Prendergast, Oliver Gessner
Citation: Siefermann, K.R. et al., 2014. Atomic-Scale Perspective of Ultrafast Charge Transfer at a Dye-Semiconductor Interface. The Journal of Physical Chemistry Letters, 5(15), pp.2753-2759.
Type: Journal-article
Authors: Jan Kern, Rosalie Tran, Roberto Alonso-Mori, Sergey Koroidov, Nathaniel Echols, Johan Hattne, Mohamed Ibrahim, Sheraz Gul, Hartawan Laksmono, Raymond G. Sierra, Richard J. Gildea, Guangye Han, Julia Hellmich, Benedikt Lassalle-Kaiser, Ruchira Chatterjee, Aaron S. Brewster, Claudiu A. Stan, Carina Glöckner, Alyssa Lampe, Dörte DiFiore, Despina Milathianaki, Alan R. Fry, M. Marvin Seibert, Jason E. Koglin, Erik Gallo, Jens Uhlig, Dimosthenis Sokaras, Tsu-Chien Weng, Petrus H. Zwart, David E. Skinner, Michael J. Bogan, Marc Messerschmidt, Pieter Glatzel, Garth J. Williams, Sébastien Boutet, Paul D. Adams, Athina Zouni, Johannes Messinger, Nicholas K. Sauter, Uwe Bergmann, Junko Yano, Vittal K. Yachandra
Citation: Kern, J. et al., 2014. Taking snapshots of photosynthetic water oxidation using femtosecond X-ray diffraction and spectroscopy. Nature Communications, 5.
Type: Journal-article
Authors: Christopher Kupitz, Shibom Basu, Ingo Grotjohann, Raimund Fromme, Nadia A. Zatsepin, Kimberly N. Rendek, Mark S. Hunter, Robert L. Shoeman, Thomas A. White, Dingjie Wang, Daniel James, Jay-How Yang, Danielle E. Cobb, Brenda Reeder, Raymond G. Sierra, Haiguang Liu, Anton Barty, Andrew L. Aquila, Daniel Deponte, Richard A. Kirian, Sadia Bari, Jesse J. Bergkamp, Kenneth R. Beyerlein, Michael J. Bogan, Carl Caleman, Tzu-Chiao Chao, Chelsie E. Conrad, Katherine M. Davis, Holger Fleckenstein, Lorenzo Galli, Stefan P. Hau-Riege, Stephan Kassemeyer, Hartawan Laksmono, Mengning Liang, Lukas Lomb, Stefano Marchesini, Andrew V. Martin, Marc Messerschmidt, Despina Milathianaki, Karol Nass, Alexandra Ros, Shatabdi Roy-Chowdhury, Kevin Schmidt, Marvin Seibert, Jan Steinbrener, Francesco Stellato, Lifen Yan, Chunhong Yoon, Thomas A. Moore, Ana L. Moore, Yulia Pushkar, Garth J. Williams, Sébastien Boutet, R. Bruce Doak, Uwe Weierstall, Matthias Frank, Henry N. Chapman, John C. H. Spence, Petra Fromme
Citation: Kupitz, C. et al., 2014. Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser. Nature, 513(7517), pp.261-265.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Yujie Chen, Joshua M. Tokuda, Traci Topping, Julie L. Sutton, Steve P. Meisburger, Suzette A. Pabit, Lisa M. Gloss, Lois Pollack
Citation: Chen, Y. et al., 2014. Revealing transient structures of nucleosomes as DNA unwinds. Nucleic Acids Research, 42(13), pp.8767-8776.
Type: Journal-article
Authors: Diana Fusco, Timothy J. Barnum, Andrew E. Bruno, Joseph R. Luft, Edward H. Snell, Sayan Mukherjee, Patrick Charbonneau
Citation: Fusco, D. et al., 2014. Statistical Analysis of Crystallization Database Links Protein Physico-Chemical Features with Crystallization Mechanisms B. Kobe, ed. PLoS ONE, 9(7), p.e101123.
Type: Journal-article
Authors: Andrew E. Bruno, Amanda M. Ruby, Joseph R. Luft, Thomas D. Grant, Jayaraman Seetharaman, Gaetano T. Montelione, John F. Hunt, Edward H. Snell
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Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: J. R. Gallant, L. L. Traeger, J. D. Volkening, H. Moffett, P.-H. Chen, C. D. Novina, G. N. Phillips, R. Anand, G. B. Wells, M. Pinch, R. Guth, G. A. Unguez, J. S. Albert, H. H. Zakon, M. P. Samanta, M. R. Sussman
Citation: Gallant, J.R. et al., 2014. Genomic basis for the convergent evolution of electric organs. Science, 344(6191), pp.1522-1525.
Type: Journal-article
Authors: Joseph R. Luft, Janet Newman, Edward H. Snell
Citation: Luft, J.R., Newman, J. & Snell, E.H., 2014. Crystallization screening: the influence of history on current practice. Acta Crystallographica Section F Structural Biology Communications, 70(7), pp.835-853.
Type: Journal-article
Authors: J. A. Sellberg, C. Huang, T. A. McQueen, N. D. Loh, H. Laksmono, D. Schlesinger, R. G. Sierra, D. Nordlund, C. Y. Hampton, D. Starodub, D. P. DePonte, M. Beye, C. Chen, A. V. Martin, A. Barty, K. T. Wikfeldt, T. M. Weiss, C. Caronna, J. Feldkamp, L. B. Skinner, M. M. Seibert, M. Messerschmidt, G. J. Williams, S. Boutet, L. G. M. Pettersson, M. J. Bogan, A. Nilsson
Citation: Sellberg, J.A. et al., 2014. Ultrafast X-ray probing of water structure below the homogeneous ice nucleation temperature. Nature, 510(7505), pp.381-384.
Type: Journal-article
Authors: Jo E. Lomax, Christopher M. Bianchetti, Aram Chang, George N. Phillips, Brian G. Fox, Ronald T. Raines
Citation: Lomax, J.E. et al., 2014. Functional Evolution of Ribonuclease Inhibitor: Insights from Birds and Reptiles. Journal of Molecular Biology, 426(17), pp.3041-3056.
Type: Journal-article
Authors: Sojin Moon, Ryan M. Bannen, Thomas J. Rutkoski, George N. Phillips, Euiyoung Bae
Citation: Moon, S. et al., 2014. Effectiveness and limitations of local structural entropy optimization in the thermal stabilization of mesophilic and thermophilic adenylate kinases. Proteins: Structure, Function, and Bioinformatics, 82(10), pp.2631-2642.
Type: Journal-article
Authors: Geoffrey K Feld, Matthias Frank
Citation: Feld, G.K. & Frank, M., 2014. Enabling membrane protein structure and dynamics with X-ray free electron lasers. Current Opinion in Structural Biology, 27, pp.69-78.
Type: Journal-article
Authors: D Rolles, R Boll, M Adolph, A Aquila, C Bostedt, J D Bozek, H N Chapman, R Coffee, N Coppola, P Decleva, T Delmas, S W Epp, B Erk, F Filsinger, L Foucar, L Gumprecht, A Hömke, T Gorkhover, L Holmegaard, P Johnsson, Ch Kaiser, F Krasniqi, K-U Kühnel, J Maurer, M Messerschmidt, R Moshammer, W Quevedo, I Rajkovic, A Rouzée, B Rudek, I Schlichting, C Schmidt, S Schorb, C D Schröter, J Schulz, H Stapelfeldt, M Stener, S Stern, S Techert, J Thøgersen, M J J Vrakking, A Rudenko, J Küpper, J Ullrich
Citation: Rolles, D. et al., 2014. Femtosecond x-ray photoelectron diffraction on gas-phase dibromobenzene molecules. Journal of Physics B: Atomic, Molecular and Optical Physics, 47(12), p.124035.
Type: Journal-article
Authors: H. N. Chapman, C. Caleman, N. Timneanu
Citation: Chapman, H.N., Caleman, C. & Timneanu, N., 2014. Diffraction before destruction. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130313-20130313.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: W. Liu, D. Wacker, C. Wang, E. Abola, V. Cherezov
Citation: Liu, W. et al., 2014. Femtosecond crystallography of membrane proteins in the lipidic cubic phase. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130314-20130314.
Type: Journal-article
Authors: C. Kupitz, I. Grotjohann, C. E. Conrad, S. Roy-Chowdhury, R. Fromme, P. Fromme
Citation: Kupitz, C. et al., 2014. Microcrystallization techniques for serial femtosecond crystallography using photosystem II from Thermosynechococcus elongatus as a model system. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130316-20130316.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: J. C. H. Spence, N. A. Zatsepin, C. Li
Citation: Spence, J.C.H., Zatsepin, N.A. & Li, C., 2014. Coherent convergent-beam time-resolved X-ray diffraction. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130325-20130325.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: A. Hosseinizadeh, P. Schwander, A. Dashti, R. Fung, R. M. D'Souza, A. Ourmazd
Citation: Hosseinizadeh, A. et al., 2014. High-resolution structure of viruses from random diffraction snapshots. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130326-20130326.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: R. A. Kirian, R. J. Bean, K. R. Beyerlein, O. M. Yefanov, T. A. White, A. Barty, H. N. Chapman
Citation: Kirian, R.A. et al., 2014. Phasing coherently illuminated nanocrystals bounded by partial unit cells. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130331-20130331.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: O. Yefanov, C. Gati, G. Bourenkov, R. A. Kirian, T. A. White, J. C. H. Spence, H. N. Chapman, A. Barty
Citation: Yefanov, O. et al., 2014. Mapping the continuous reciprocal space intensity distribution of X-ray serial crystallography. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130333-20130333.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: U. Weierstall
Citation: Weierstall, U., 2014. Liquid sample delivery techniques for serial femtosecond crystallography. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130337-20130337.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: B. Pedrini, C.-J. Tsai, G. Capitani, C. Padeste, M. S. Hunter, N. A. Zatsepin, A. Barty, W. H. Benner, S. Boutet, G. K. Feld, S. P. Hau-Riege, R. A. Kirian, C. Kupitz, M. Messerschmitt, J. I. Ogren, T. Pardini, B. Segelke, G. J. Williams, J. C. H. Spence, R. Abela, M. Coleman, J. E. Evans, G. F. X. Schertler, M. Frank, X.-D. Li
Citation: Pedrini, B. et al., 2014. 7 A resolution in protein two-dimensional-crystal X-ray diffraction at Linac Coherent Light Source. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130500-20130500.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: P. Schwander, R. Fung, A. Ourmazd
Citation: Schwander, P., Fung, R. & Ourmazd, A., 2014. Conformations of macromolecules and their complexes from heterogeneous datasets. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130567-20130567.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: K. Pande, P. Schwander, M. Schmidt, D. K. Saldin
Citation: Pande, K. et al., 2014. Deducing fast electron density changes in randomly orientated uncrystallized biomolecules in a pump-probe experiment. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130332-20130332.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: M. Caffrey, D. Li, N. Howe, S. T. A. Shah
Citation: Caffrey, M. et al., 2014. "Hit and run" serial femtosecond crystallography of a membrane kinase in the lipid cubic phase. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130621-20130621.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Diling Zhu, Yiping Feng, Stanislav Stoupin, Sergey A. Terentyev, Henrik T. Lemke, David M. Fritz, Matthieu Chollet, J. M. Glownia, Roberto Alonso-Mori, Marcin Sikorski, Sanghoon Song, Tim B. van Driel, Garth J. Williams, Marc Messerschmidt, Sébastien Boutet, Vladimir D. Blank, Yuri V. Shvyd'ko, Aymeric Robert
Citation: Zhu, D. et al., 2014. Performance of a beam-multiplexing diamond crystal monochromator at the Linac Coherent Light Source. Review of Scientific Instruments, 85(6), p.063106.
Type: Journal-article
Authors: Asuka Nakano, Jinghui Luo, Alexandra Ros
Citation: Nakano, A., Luo, J. & Ros, A., 2014. Temporal and Spatial Temperature Measurement in Insulator-Based Dielectrophoretic Devices. Analytical Chemistry, 86(13), pp.6516-6524.
Type: Journal-article
Authors: Chufeng Li, Ganesh Subramanian, John C.H. Spence
Citation: Li, C., Subramanian, G. & Spence, J.C.H., 2014. Time-Resolved Spectra from Millivolt EELS Data. Microscopy and Microanalysis, 20(03), pp.837-846.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Daniel A. Keedy, Henry van den Bedem, David A. Sivak, Gregory A. Petsko, Dagmar Ringe, Mark A. Wilson, James S. Fraser
Citation: Keedy, D.A. et al., 2014. Crystal Cryocooling Distorts Conformational Heterogeneity in a Model Michaelis Complex of DHFR. Structure, 22(6), pp.899-910.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: H. P. Stevenson, A. M. Makhov, M. Calero, A. L. Edwards, O. B. Zeldin, I. I. Mathews, G. Lin, C. O. Barnes, H. Santamaria, T. M. Ross, S. M. Soltis, C. Khosla, V. Nagarajan, J. F. Conway, A. E. Cohen, G. Calero
Citation: Stevenson, H.P. et al., 2014. Use of transmission electron microscopy to identify nanocrystals of challenging protein targets. Proceedings of the National Academy of Sciences, 111(23), pp.8470-8475.
Type: Journal-article
Authors: Tom Pardini, Sébastien Boutet, Joseph Bradley, Tilo Döppner, Luke B. Fletcher, Dennis F. Gardner, Randy M. Hill, Mark S. Hunter, Jacek Krzywinski, Marc Messerschmidt, Arthur E. Pak, Florian Quirin, Klaus Sokolowski-Tinten, Garth J. Williams, Stefan P. Hau-Riege
Citation: Pardini, T. et al., 2014. Silicon Mirrors for High-Intensity X-Ray Pump and Probe Experiments. Physical Review Applied, 1(4).
Type: Journal-article
Authors: Joseph R. Luft, Thomas D. Grant, Jennifer R. Wolfley, Edward H. Snell
Citation: Luft, J.R. et al., 2014. A new view on crystal harvesting. J Appl Crystallogr, 47(3), pp.1158-1161.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Ragothaman Yennamalli, Raj Arangarasan, Aaron Bryden, Michael Gleicher, George N. Phillips
Citation: Yennamalli, R. et al., 2014. Using a commodity high-definition television for collaborative structural biology. J Appl Crystallogr, 47(3), pp.1153-1157.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Marcus Fischer, Ryan G. Coleman, James S. Fraser, Brian K. Shoichet
Citation: Fischer, M. et al., 2014. Incorporation of protein flexibility and conformational energy penalties in docking screens to improve ligand discovery. Nature Chemistry, 6(7), pp.575-583.
Type: Journal-article
Authors: Justin D. Flory, Chad R. Simmons, Su Lin, Trey Johnson, Alessio Andreoni, James Zook, Giovanna Ghirlanda, Yan Liu, Hao Yan, Petra Fromme
Citation: Flory, J.D. et al., 2014. Low Temperature Assembly of Functional 3D DNA-PNA-Protein Complexes. Journal of the American Chemical Society, 136(23), pp.8283-8295.
Type: Journal-article
Authors: Ivan Komarov, Ali Dashti, Roshan M. D'Souza
Citation: Komarov, I., Dashti, A. & D'Souza, R.M., 2014. Fast k-NNG Construction with GPU-Based Quick Multi-Select M. Gomez-Gesteira, ed. PLoS ONE, 9(5), p.e92409.
Type: Journal-article
Authors: John C.H. Spence
Citation: Spence, J.C.H., 2014. X-ray lasers and crystallography. IUCrJ, 1(3), pp.151-152.
Type: Journal-article
Authors: V. Schweikhard, C. Meng, K. Murakami, C. D. Kaplan, R. D. Kornberg, S. M. Block
Citation: Schweikhard, V. et al., 2014. Transcription factors TFIIF and TFIIS promote transcript elongation by RNA polymerase II by synergistic and independent mechanisms. Proceedings of the National Academy of Sciences, 111(18), pp.6642-6647.
Type: Journal-article
Authors: M Mucke, V Zhaunerchyk, R J Squibb, M Kamińska, J H D Eland, P v d Meulen, P Salén, P Linusson, R D Thomas, M Larsson, L J Frasinski, M Siano, T Osipov, L Fang, B Murphy, N Berrah, L Foucar, J Ullrich, K Motomura, S Mondal, K Ueda, R Richter, K C Prince, M N Piancastelli, M Glownia, J Cryan, R Coffee, C Bostedt, J Bozek, S Schorb, M Messerschmidt, O Takahashi, S Wada, R Feifel
Citation: Mucke, M. et al., 2014. Mapping the decay of double core hole states of atoms and molecules. Journal of Physics: Conference Series, 488(3), p.032021.
Type: Journal-article
Authors: Jasper J. van Thor, Mark M. Warren, Craig N. Lincoln, Matthieu Chollet, Henrik Till Lemke, David M. Fritz, Marius Schmidt, Jason Tenboer, Zhong Ren, Vukica Srajer, Keith Moffat, Tim Graber
Citation: Van Thor, J.J. et al., 2014. Signal to noise considerations for single crystal femtosecond time resolved crystallography of the Photoactive Yellow Protein. Faraday Discuss., 171, pp.439-455.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: G A Carini, S Boutet, M Chollet, A Dragone, G Haller, P A Hart, S C Herrmann, C J Kenney, J Koglin, M Messerschmidt, S Nelson, J Pines, A Robert, S Song, J B Thayer, G J Williams, D Zhu
Citation: Carini, G.A. et al., 2014. Experience with the CSPAD during dedicated detector runs at LCLS. Journal of Physics: Conference Series, 493, p.012011.
Type: Journal-article
Authors: Marius Schmidt, Dilano K. Saldin
Citation: Schmidt, M. & Saldin, D.K., 2014. Enzyme transient state kinetics in crystal and solution from the perspective of a time-resolved crystallographer. Structural Dynamics, 1(2), p.024701.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Matthias Fuchs
Citation: Fuchs, M., 2014. Nonlinear X-ray Compton Scattering. Research in Optical Sciences.
Type: Proceedings-article
Authors: John C. H. Spence
Citation: Spence, J.C.H., 2014. Approaches to time-resolved diffraction using an XFEL. Faraday Discuss., 171, pp.429-438.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Yang Ouk Jung, Jae Hyuk Lee, Joonghan Kim, Marius Schmidt, Keith Moffat, Vukica Šrajer, Hyotcherl Ihee
Citation: Jung, Y.O. et al., 2014. Reply to "Contradictions in X-ray structures of intermediates in the photocycle of photoactive yellow protein." Nature Chem, 6(4), pp.259-260.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Fengbin Wang, Shanteri Singh, Jianjun Zhang, Tyler D. Huber, Kate E. Helmich, Manjula Sunkara, Katherine A. Hurley, Randal D. Goff, Craig A. Bingman, Andrew J. Morris, Jon S. Thorson, George N. Phillips
Citation: Wang, F. et al., 2014. Understanding molecular recognition of promiscuity of thermophilic methionine adenosyltransferase sMAT fromSulfolobus solfataricus. FEBS Journal, 281(18), pp.4224-4239.
Type: Journal-article
Authors: J. Szlachetko, C. J. Milne, J. Hoszowska, J.-Cl. Dousse, W. Błachucki, J. Sà, Y. Kayser, M. Messerschmidt, R. Abela, S. Boutet, C. David, G. Williams, M. Pajek, B. D. Patterson, G. Smolentsev, J. A. van Bokhoven, M. Nachtegaal
Citation: Szlachetko, J. et al., 2014. Communication: The electronic structure of matter probed with a single femtosecond hard x-ray pulse. Structural Dynamics, 1(2), p.021101.
Type: Journal-article
Authors: Johan Hattne, Nathaniel Echols, Rosalie Tran, Jan Kern, Richard J Gildea, Aaron S Brewster, Roberto Alonso-Mori, Carina Glöckner, Julia Hellmich, Hartawan Laksmono, Raymond G Sierra, Benedikt Lassalle-Kaiser, Alyssa Lampe, Guangye Han, Sheraz Gul, Dörte DiFiore, Despina Milathianaki, Alan R Fry, Alan Miahnahri, William E White, Donald W Schafer, M Marvin Seibert, Jason E Koglin, Dimosthenis Sokaras, Tsu-Chien Weng, Jonas Sellberg, Matthew J Latimer, Pieter Glatzel, Petrus H Zwart, Ralf W Grosse-Kunstleve, Michael J Bogan, Marc Messerschmidt, Garth J Williams, Sébastien Boutet, Johannes Messinger, Athina Zouni, Junko Yano, Uwe Bergmann, Vittal K Yachandra, Paul D Adams, Nicholas K Sauter
Citation: Hattne, J. et al., 2014. Accurate macromolecular structures using minimal measurements from X-ray free-electron lasers. Nature Methods, 11(5), pp.545-548.
Type: Journal-article
Authors: D.S. Rackstraw, S.M. Vinko, O. Ciricosta, B.I. Cho, K. Engelhorn, H.-K. Chung, C.R.D. Brown, T. Burian, J. Chalupský, R.W. Falcone, C. Graves, V. Hájková, A. Higginbotham, L. Juha, J. Krzywinski, H.J. Lee, M. Messerschmidt, C. Murphy, Y. Ping, A. Scherz, W. Schlotter, S. Toleikis, J.J. Turner, L. Vysin, T. Wang, B. Wu, U. Zastrau, D. Zhu, B. Nagler, R.W. Lee, P.A. Heimann, J.S. Wark
Citation: Rackstraw, D.S. et al., 2014. Opacity effects in a solid-density aluminium plasma created by photo-excitation with an X-ray laser. High Energy Density Physics, 11, pp.59-69.
Type: Journal-article
Authors: Sojin Moon, Du-kyo Jung, George N. Phillips, Euiyoung Bae
Citation: Moon, S. et al., 2014. An integrated approach for thermal stabilization of a mesophilic adenylate kinase. Proteins: Structure, Function, and Bioinformatics, 82(9), pp.1947-1959.
Type: Journal-article
Authors: Jochen Küpper, Stephan Stern, Lotte Holmegaard, Frank Filsinger, Arnaud Rouzée, Artem Rudenko, Per Johnsson, Andrew V. Martin, Marcus Adolph, Andrew Aquila, Saša Bajt, Anton Barty, Christoph Bostedt, John Bozek, Carl Caleman, Ryan Coffee, Nicola Coppola, Tjark Delmas, Sascha Epp, Benjamin Erk, Lutz Foucar, Tais Gorkhover, Lars Gumprecht, Andreas Hartmann, Robert Hartmann, Günter Hauser, Peter Holl, Andre Hömke, Nils Kimmel, Faton Krasniqi, Kai-Uwe Kühnel, Jochen Maurer, Marc Messerschmidt, Robert Moshammer, Christian Reich, Benedikt Rudek, Robin Santra, Ilme Schlichting, Carlo Schmidt, Sebastian Schorb, Joachim Schulz, Heike Soltau, John C. H. Spence, Dmitri Starodub, Lothar Strüder, Jan Thøgersen, Marc J. J. Vrakking, Georg Weidenspointner, Thomas A. White, Cornelia Wunderer, Gerard Meijer, Joachim Ullrich, Henrik Stapelfeldt, Daniel Rolles, Henry N. Chapman
Citation: Küpper, J. et al., 2014. X-Ray Diffraction from Isolated and Strongly Aligned Gas-Phase Molecules with a Free-Electron Laser. Physical Review Letters, 112(8).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jose M. Martin-Garcia, Debra T. Hansen, James Zook, Andrey V. Loskutov, Mark D. Robida, Felicia M. Craciunescu, Kathryn F. Sykes, Rebekka M. Wachter, Petra Fromme, James P. Allen
Citation: Martin-Garcia, J.M. et al., 2014. Purification and Biophysical Characterization of the CapA Membrane Protein FTT0807 fromFrancisella tularensis. Biochemistry, 53(12), pp.1958-1970.
Type: Journal-article
Authors: Jinghui Luo, Bahige G. Abdallah, Gregory G. Wolken, Edgar A. Arriaga, Alexandra Ros
Citation: Luo, J. et al., 2014. Insulator-based dielectrophoresis of mitochondria. Biomicrofluidics, 8(2), p.021801.
Type: Journal-article
Authors: Uwe Weierstall, Daniel James, Chong Wang, Thomas A. White, Dingjie Wang, Wei Liu, John C. H. Spence, R. Bruce Doak, Garrett Nelson, Petra Fromme, Raimund Fromme, Ingo Grotjohann, Christopher Kupitz, Nadia A. Zatsepin, Haiguang Liu, Shibom Basu, Daniel Wacker, Gye Won Han, Vsevolod Katritch, Sébastien Boutet, Marc Messerschmidt, Garth J. Williams, Jason E. Koglin, M. Marvin Seibert, Markus Klinker, Cornelius Gati, Robert L. Shoeman, Anton Barty, Henry N. Chapman, Richard A. Kirian, Kenneth R. Beyerlein, Raymond C. Stevens, Dianfan Li, Syed T. A. Shah, Nicole Howe, Martin Caffrey, Vadim Cherezov
Citation: Weierstall, U. et al., 2014. Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography. Nature Communications, 5(1).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Matthias Frank, David B. Carlson, Mark S. Hunter, Garth J. Williams, Marc Messerschmidt, Nadia A. Zatsepin, Anton Barty, W. Henry Benner, Kaiqin Chu, Alexander T. Graf, Stefan P. Hau-Riege, Richard A. Kirian, Celestino Padeste, Tommaso Pardini, Bill Pedrini, Brent Segelke, M. Marvin Seibert, John C. H. Spence, Ching-Ju Tsai, Stephen M. Lane, Xiao-Dan Li, Gebhard Schertler, Sebastien Boutet, Matthew Coleman, James E. Evans
Citation: Frank, M. et al., 2014. Femtosecond X-ray diffraction from two-dimensional protein crystals. IUCrJ, 1(2), pp.95-100.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: R. Paul, R. E. Jinkerson, K. Buss, J. Steel, R. Mohr, W. R. Hess, M. Chen, P. Fromme
Citation: Paul, R. et al., 2014. Draft Genome Sequence of the Filamentous Cyanobacterium Leptolyngbya sp. Strain Heron Island J, Exhibiting Chromatic Acclimation. Genome Announcements, 2(1), pp.e01166-13-e01166-13.
Type: Journal-article
Authors: Michael E. Wall, Paul D. Adams, James S. Fraser, Nicholas K. Sauter
Citation: Wall, M.E. et al., 2014. Diffuse X-Ray Scattering to Model Protein Motions. Structure, 22(2), pp.182-184.
Type: Journal-article
Authors: Sean McSweeney, Petra Fromme
Citation: McSweeney, S. & Fromme, P., 2014. Crystallography: Sources of inspiration. Nature, 505(7485), pp.620-621.
Type: Journal-article
Authors: Kevin K. Desai, Chin L. Cheng, Craig A. Bingman, George N. Phillips, Ronald T. Raines
Citation: Desai, K.K. et al., 2014. A tRNA splicing operon: Archease endows RtcB with dual GTP/ATP cofactor specificity and accelerates RNA ligation. Nucleic Acids Research, 42(6), pp.3931-3942.
Type: Journal-article
Authors: Gheorghe Acbas, Katherine A. Niessen, Edward H. Snell, A.G. Markelz
Citation: Acbas, G. et al., 2014. Optical measurements of long-range protein vibrations. Nature Communications, 5.
Type: Journal-article
Authors: Joe P. J. Chen, John C. H. Spence, Rick P. Millane
Citation: Chen, J.P.J., Spence, J.C.H. & Millane, R.P., 2014. Direct phasing in femtosecond nanocrystallography. I. Diffraction characteristics. Acta Cryst Sect A Found Adv, 70(2), pp.143-153.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Joe P. J. Chen, John C. H. Spence, Rick P. Millane
Citation: Chen, J.P.J., Spence, J.C.H. & Millane, R.P., 2014. Direct phasing in femtosecond nanocrystallography. II. Phase retrieval. Acta Cryst Sect A Found Adv, 70(2), pp.154-161.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: R. B. Fenwick, H. van den Bedem, J. S. Fraser, P. E. Wright
Citation: Fenwick, R.B. et al., 2014. Integrated description of protein dynamics from room-temperature X-ray crystallography and NMR. Proceedings of the National Academy of Sciences, 111(4), pp.E445-E454.
Type: Journal-article
Authors: Sanchari Bhattacharya, Tzu-Chiao Chao, Nethmi Ariyasinghe, Yvette Ruiz, Douglas Lake, Robert Ros, Alexandra Ros
Citation: Bhattacharya, S. et al., 2014. Selective trapping of single mammalian breast cancer cells by insulator-based dielectrophoresis. Analytical and Bioanalytical Chemistry, 406(7), pp.1855-1865.
Type: Journal-article
Authors: P. T. Lang, J. M. Holton, J. S. Fraser, T. Alber
Citation: Lang, P.T. et al., 2013. Protein structural ensembles are revealed by redefining X-ray electron density noise. Proceedings of the National Academy of Sciences, 111(1), pp.237-242.
Type: Journal-article
Authors: W. Liu, D. Wacker, C. Gati, G. W. Han, D. James, D. Wang, G. Nelson, U. Weierstall, V. Katritch, A. Barty, N. A. Zatsepin, D. Li, M. Messerschmidt, S. Boutet, G. J. Williams, J. E. Koglin, M. M. Seibert, C. Wang, S. T. A. Shah, S. Basu, R. Fromme, C. Kupitz, K. N. Rendek, I. Grotjohann, P. Fromme, R. A. Kirian, K. R. Beyerlein, T. A. White, H. N. Chapman, M. Caffrey, J. C. H. Spence, R. C. Stevens, V. Cherezov
Citation: Liu, W. et al., 2013. Serial Femtosecond Crystallography of G Protein-Coupled Receptors. Science, 342(6165), pp.1521-1524.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Linda C. Johansson, David Arnlund, Gergely Katona, Thomas A. White, Anton Barty, Daniel P. DePonte, Robert L. Shoeman, Cecilia Wickstrand, Amit Sharma, Garth J. Williams, Andrew Aquila, Michael J. Bogan, Carl Caleman, Jan Davidsson, R Bruce Doak, Matthias Frank, Raimund Fromme, Lorenzo Galli, Ingo Grotjohann, Mark S. Hunter, Stephan Kassemeyer, Richard A. Kirian, Christopher Kupitz, Mengning Liang, Lukas Lomb, Erik Malmerberg, Andrew V. Martin, Marc Messerschmidt, Karol Nass, Lars Redecke, M Marvin Seibert, Jennie Sjöhamn, Jan Steinbrener, Francesco Stellato, Dingjie Wang, Weixaio Y. Wahlgren, Uwe Weierstall, Sebastian Westenhoff, Nadia A. Zatsepin, Sébastien Boutet, John C.H. Spence, Ilme Schlichting, Henry N. Chapman, Petra Fromme, Richard Neutze
Citation: Johansson, L.C. et al., 2013. Structure of a photosynthetic reaction centre determined by serial femtosecond crystallography. Nat Comms, 4.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: E. C. Mattson, J. E. Johns, K. Pande, R. A. Bosch, S. Cui, M. Gajdardziska-Josifovska, M. Weinert, J. H. Chen, M. C. Hersam, C. J. Hirschmugl
Citation: Mattson, E.C. et al., 2014. Vibrational Excitations and Low-Energy Electronic Structure of Epoxide-Decorated Graphene. The Journal of Physical Chemistry Letters, 5(1), pp.212-219.
Type: Journal-article
Authors: A. T. Vaidya, D. Top, C. C. Manahan, J. M. Tokuda, S. Zhang, L. Pollack, M. W. Young, B. R. Crane
Citation: Vaidya, A.T. et al., 2013. Flavin reduction activates Drosophila cryptochrome. Proceedings of the National Academy of Sciences, 110(51), pp.20455-20460.
Type: Journal-article
Authors: Jeremy R. Lohman, Ming Ma, Marianne E. Cuff, Lance Bigelow, Jessica Bearden, Gyorgy Babnigg, Andrzej Joachimiak, George N. Phillips, Ben Shen
Citation: Lohman, J.R. et al., 2013. The crystal structure of BlmI as a model for nonribosomal peptide synthetase peptidyl carrier proteins. Proteins: Structure, Function, and Bioinformatics, 82(7), pp.1210-1218.
Type: Journal-article
Authors: Thomas R. M. Barends, Lutz Foucar, Sabine Botha, R. Bruce Doak, Robert L. Shoeman, Karol Nass, Jason E. Koglin, Garth J. Williams, Sébastien Boutet, Marc Messerschmidt, Ilme Schlichting
Citation: Barends, T.R.M. et al., 2013. De novo protein crystal structure determination from X-ray free-electron laser data. Nature, 505(7482), pp.244-247.
Type: Journal-article
Authors: Kristin A. Sutton, Paul J. Black, Kermit R. Mercer, Elspeth F. Garman, Robin L. Owen, Edward H. Snell, William A. Bernhard
Citation: Sutton, K.A. et al., 2013. Insights into the mechanism of X-ray-induced disulfide-bond cleavage in lysozyme crystals based on EPR, optical absorption and X-ray diffraction studies. Acta Crystallogr D, 69(12), pp.2381-2394.
Type: Journal-article
Authors: Marius Schmidt, Vukica Srajer, Robert Henning, Hyotcherl Ihee, Namrta Purwar, Jason Tenboer, Shailesh Tripathi
Citation: Schmidt, M. et al., 2013. Protein energy landscapes determined by five-dimensional crystallography. Acta Crystallogr D, 69(12), pp.2534-2542.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Hyung Joo Park, N. Duane Loh, Raymond G. Sierra, Christina Y. Hampton, Dmitri Starodub, Andrew V. Martin, Anton Barty, Andrew Aquila, Joachim Schulz, Jan Steinbrener, Robert L. Shoeman, Lukas Lomb, Stephan Kassemeyer, Christoph Bostedt, John Bozek, Sascha W. Epp, Benjamin Erk, Robert Hartmann, Daniel Rolles, Artem Rudenko, Benedikt Rudek, Lutz Foucar, Nils Kimmel, Georg Weidenspointner, Guenter Hauser, Peter Holl, Emanuele Pedersoli, Mengning Liang, Mark S. Hunter, Lars Gumprecht, Nicola Coppola, Cornelia Wunderer, Heinz Graafsma, Filipe R.N.C. Maia, Tomas Ekeberg, Max Hantke, Holger Fleckenstein, Helmut Hirsemann, Karol Nass, Herbert J. Tobias, George R. Farquar, W. Henry Benner, Stefan Hau-Riege, Christian Reich, Andreas Hartmann, Heike Soltau, Stefano Marchesini, Sasa Bajt, Miriam Barthelmess, Lothar Strueder, Joachim Ullrich, Philip Bucksbaum, Matthias Frank, Ilme Schlichting, Henry N. Chapman, Michael J. Bogan, Veit Elser
Citation: Park, H.J. et al., 2013. Toward unsupervised single-shot diffractive imaging of heterogeneous particles using X-ray free-electron lasers. Optics Express, 21(23), p.28729.
Type: Journal-article
Authors: J.-U. Kreft, C. M. Plugge, V. Grimm, C. Prats, J. H. J. Leveau, T. Banitz, S. Baines, J. Clark, A. Ros, I. Klapper, C. J. Topping, A. J. Field, A. Schuler, E. Litchman, F. L. Hellweger
Citation: Kreft, J.-U. et al., 2013. Mighty small: Observing and modeling individual microbes becomes big science. Proceedings of the National Academy of Sciences, 110(45), pp.18027-18028.
Type: Journal-article
Authors: Bahige G. Abdallah, Christopher Kupitz, Petra Fromme, Alexandra Ros
Citation: Abdallah, B.G. et al., 2013. Crystallization of the Large Membrane Protein Complex Photosystem I in a Microfluidic Channel. ACS Nano, 7(12), pp.10534-10543.
Type: Journal-article
Authors: B.G. Abdallah, A. Ros
Citation: Abdallah, B.G. & Ros, A., 2013. Surface coatings for microfluidic-based biomedical devices. Microfluidic Devices for Biomedical Applications, pp.63-99.
Type: Book-chapter
Authors: James D. Zook, Trivikram R. Molugu, Neil E. Jacobsen, Guangxin Lin, Jürgen Soll, Brian R. Cherry, Michael F. Brown, Petra Fromme
Citation: Zook, J.D. et al., 2013. High-Resolution NMR Reveals Secondary Structure and Folding of Amino Acid Transporter from Outer Chloroplast Membrane O. Y. Dmitriev, ed. PLoS ONE, 8(10), p.e78116.
Type: Journal-article
Authors: Lin Gan, Tzu-Chiao Chao, Fernanda Camacho-Alanis, Alexandra Ros
Citation: Gan, L. et al., 2013. Six-Helix Bundle and Triangle DNA Origami Insulator-Based Dielectrophoresis. Analytical Chemistry, 85(23), pp.11427-11434.
Type: Journal-article
Authors: David A. Bushnell, Roger D. Kornberg
Citation: Bushnell, D.A. & Kornberg, R.D., 2013. Eukaryotic RNA Polymerase II. Nucleic Acids and Molecular Biology, pp.277-287.
Type: Book-chapter
Authors: W. Christenson, I. Yermolenko, B. Plochberger, F. Camacho-Alanis, A. Ros, T.P. Ugarova, R. Ros
Citation: Christenson, W. et al., 2014. Combined single cell AFM manipulation and TIRFM for probing the molecular stability of multilayer fibrinogen matrices. Ultramicroscopy, 136, pp.211-215.
Type: Journal-article
Authors: Haiguang Liu, Nadia A. Zatsepin, John C. H. Spence
Citation: Liu, H., Zatsepin, N.A. & Spence, J.C.H., 2013. Ab-initio phasing using nanocrystal shape transforms with incomplete unit cells . IUCrJ, 1(1), pp.19-27.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: K. Murakami, H. Elmlund, N. Kalisman, D. A. Bushnell, C. M. Adams, M. Azubel, D. Elmlund, Y. Levi-Kalisman, X. Liu, B. J. Gibbons, M. Levitt, R. D. Kornberg
Citation: Murakami, K. et al., 2013. Architecture of an RNA Polymerase II Transcription Pre-Initiation Complex. Science, 342(6159), pp.1238724-1238724.
Type: Journal-article
Authors: Ali Dashti, Ivan Komarov, Roshan M. D’Souza
Citation: Dashti, A., Komarov, I. & D'Souza, R.M., 2013. Efficient Computation of k-Nearest Neighbour Graphs for Large High-Dimensional Data Sets on GPU Clusters A. Gursoy, ed. PLoS ONE, 8(9), p.e74113.
Type: Journal-article
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