Publications by BioXFEL Researchers Since Start of BioXFEL Grant

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Acknowledges BioXFEL NSF-STC
   
Authors: Linda C. Johansson, Benjamin Stauch, Andrii Ishchenko, Vadim Cherezov
Citation: Johansson, L.C. et al., 2017. A Bright Future for Serial Femtosecond Crystallography with XFELs. Trends in Biochemical Sciences.
Type: Journal-article
Authors: Masoud Mehrjoo, Klaus Giewekemeyer, Patrik Vagovič, Stephan Stern, Richard Bean, Marc Messerschmidt, Barbara Keitel, Elke Plönjes, Marion Kuhlmann, Tobias Mey, Evgeny A. Schneidmiller, Mikhail V. Yurkov, Torsten Limberg, Adrian P. Mancuso
Citation: Mehrjoo, M. et al., 2017. Single-shot determination of focused FEL wave fields using iterative phase retrieval. Optics Express, 25(15), p.17892.
Type: Journal-article
Authors: Andrii Ishchenko, Daniel Wacker, Mili Kapoor, Ai Zhang, Gye Won Han, Shibom Basu, Nilkanth Patel, Marc Messerschmidt, Uwe Weierstall, Wei Liu, Vsevolod Katritch, Bryan L. Roth, Raymond C. Stevens, Vadim Cherezov
Citation: Ishchenko, A. et al., 2017. Structural insights into the extracellular recognition of the human serotonin 2B receptor by an antibody. Proceedings of the National Academy of Sciences, p.201700891.
Type: Journal-article
Authors: Izumi Ishigami, Nadia A. Zatsepin, Masahide Hikita, Chelsie E. Conrad, Garrett Nelson, Jesse D. Coe, Shibom Basu, Thomas D. Grant, Matthew H. Seaberg, Raymond G. Sierra, Mark S. Hunter, Petra Fromme, Raimund Fromme, Syun-Ru Yeh, Denis L. Rousseau
Citation: Ishigami, I. et al., 2017. Crystal structure of CO-bound cytochrome c oxidase determined by serial femtosecond X-ray crystallography at room temperature . Proceedings of the National Academy of Sciences, p.201705628.
Type: Journal-article
Authors: Kenneth R. Beyerlein, Thomas A. White, Oleksandr Yefanov, Cornelius Gati, Ivan G. Kazantsev, Nicolai Fog-Gade Nielsen, Peter M. Larsen, Henry N. Chapman, Søren Schmidt
Citation: Beyerlein, K.R. et al., 2017. FELIX: an algorithm for indexing multiple crystallites in X-ray free-electron laser snapshot diffraction images. Journal of Applied Crystallography, 50(4).
Type: Journal-article
Authors: Henry N. Chapman, Oleksandr M. Yefanov, Kartik Ayyer, Thomas A. White, Anton Barty, Andrew Morgan, Valerio Mariani, Dominik Oberthuer, Kanupriya Pande
Citation: Chapman, H.N. et al., 2017. Continuous diffraction of molecules and disordered molecular crystals. Journal of Applied Crystallography, 50(4).
Type: Journal-article
Authors: Andrew J. Amaya, Harshad Pathak, Viraj P. Modak, Hartawan Laksmono, N. Duane Loh, Jonas A. Sellberg, Raymond G. Sierra, Trevor A. McQueen, Matt J. Hayes, Garth J. Williams, Marc Messerschmidt, Sébastien Boutet, Michael J. Bogan, Anders Nilsson, Claudiu A. Stan, Barbara E. Wyslouzil
Citation: Amaya, A.J. et al., 2017. How Cubic Can Ice Be? The Journal of Physical Chemistry Letters, pp.3216-3222.
Type: Journal-article
Authors: Hemanth K.N. Reddy, Chun Hong Yoon, Andrew Aquila, Salah Awel, Kartik Ayyer, Anton Barty, Peter Berntsen, Johan Bielecki, Sergey Bobkov, Maximilian Bucher, Gabriella A. Carini, Sebastian Carron, Henry Chapman, Benedikt Daurer, Hasan DeMirci, Tomas Ekeberg, Petra Fromme, Janos Hajdu, Max Felix Hanke, Philip Hart, Brenda G. Hogue, Ahmad Hosseinizadeh, Yoonhee Kim, Richard A. Kirian, Ruslan P. Kurta, Daniel S.D. Larsson, N. Duane Loh, Filipe R.N.C. Maia, Adrian P. Mancuso, Kerstin Mühlig, Anna Munke, Daewoong Nam, Carl Nettelblad, Abbas Ourmazd, Max Rose, Peter Schwander, Marvin Seibert, Jonas A. Sellberg, Changyong Song, John C.H. Spence, Martin Svenda, Gijs Van der Schot, Ivan A. Vartanyants, Garth J. Williams, P. Lourdu Xavier
Citation: Reddy, H.K.N. et al., 2017. Coherent soft X-ray diffraction imaging of coliphage PR772 at the Linac coherent light source. Scientific Data, 4, p.170079.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Pius S. Padayatti, Josephine H. Leung, Paween Mahinthichaichan, Emad Tajkhorshid, Andrii Ishchenko, Vadim Cherezov, S. Michael Soltis, J. Baz Jackson, C. David Stout, Robert B. Gennis, Qinghai Zhang
Citation: Padayatti, P.S. et al., 2017. Critical Role of Water Molecules in Proton Translocation by the Membrane-Bound Transhydrogenase. Structure, 25(7), pp.1111-1119.e3.
Type: Journal-article
Authors: Vojtech Vozda, Pavel Boháček, Tomáš Burian, Jaromir Chalupský, Vera Hájková, Libor Juha, Ludek Vyšín, Jérôme Gaudin, Philip A. Heimann, Stefan P. Hau-Riege, Marek Jurek, Dorota Klinger, Jacek Krzywinski, Marc Messerschmidt, Stefan P. Moeller, Robert Nagler, Jerzy B. Pelka, Michael Rowen, William F. Schlotter, Michele L. Swiggers, Harald Sinn, Ryszard Sobierajski, Kai Tiedtke, Sven Toleikis, Thomas Tschentscher, Joshua J. Turner, Hubertus Wabnitz, Art J. Nelson, Maria V. Kozlova, Sam M. Vinko, Thomas Whitcher, Thomas Dzelzainis, Oldrich Renner, Karel Saksl, Roland R. Fäustlin, Ali R. Khorsand, Marta Fajardo, Bianca S. Iwan, Jakob Andreasson, Janos Hajdu, Nicusor Timneanu, Justin S. Wark, David Riley, Richard W. Lee, Mitsuru Nagasono, Makina Yabashi
Citation: Vozda, V. et al., 2017. Non-thermal damage to lead tungstate induced by intense short-wavelength laser radiation (Conference Presentation) L. Juha, S. Bajt, & R. Soufli, eds. Damage to VUV, EUV, and X-ray Optics VI.
Type: Proceedings-article
Authors: Dominik Oberthuer, Juraj Knoška, Max O. Wiedorn, Kenneth R. Beyerlein, David A. Bushnell, Elena G. Kovaleva, Michael Heymann, Lars Gumprecht, Richard A. Kirian, Anton Barty, Valerio Mariani, Aleksandra Tolstikova, Luigi Adriano, Salah Awel, Miriam Barthelmess, Katerina Dörner, P. Lourdu Xavier, Oleksandr Yefanov, Daniel R. James, Garrett Nelson, Dingjie Wang, George Calvey, Yujie Chen, Andrea Schmidt, Michael Szczepek, Stefan Frielingsdorf, Oliver Lenz, Edward Snell, Philip J. Robinson, Božidar Šarler, Grega Belšak, Marjan Maček, Fabian Wilde, Andrew Aquila, Sébastien Boutet, Mengning Liang, Mark S. Hunter, Patrick Scheerer, John D. Lipscomb, Uwe Weierstall, Roger D. Kornberg, John C. H. Spence, Lois Pollack, Henry N. Chapman, Saša Bajt
Citation: Oberthuer, D. et al., 2017. Corrigendum: Double-flow focused liquid injector for efficient serial femtosecond crystallography. Scientific Reports, 7, p.46846.
Type: Journal-article
Authors: David Popp, N. Duane Loh, Habiba Zorgati, Umesh Ghoshdastider, Lu Ting Liow, Magdalena I. Ivanova, Mårten Larsson, Daniel P. DePonte, Richard Bean, Kenneth R. Beyerlein, Cornelius Gati, Dominik Oberthuer, David Arnlund, Gisela Brändén, Peter Berntsen, Duilio Cascio, Leonard M. G. Chavas, Joe P. J. Chen, Ke Ding, Holger Fleckenstein, Lars Gumprecht, Rajiv Harimoorthy, Estelle Mossou, Michael R. Sawaya, Aaron S. Brewster, Johan Hattne, Nicholas K. Sauter, Marvin Seibert, Carolin Seuring, Francesco Stellato, Thomas Tilp, David S. Eisenberg, Marc Messerschmidt, Garth J. Williams, Jason E. Koglin, Lee Makowski, Rick P. Millane, Trevor Forsyth, Sébastien Boutet, Thomas A. White, Anton Barty, Henry Chapman, Swaine L. Chen, Mengning Liang, Richard Neutze, Robert C. Robinson
Citation: Popp, D. et al., 2017. Flow-aligned, single-shot fiber diffraction using a femtosecond X-ray free-electron laser. Cytoskeleton.
Type: Journal-article
Authors: Andrii Ishchenko, Enrique E. Abola, Vadim Cherezov
Citation: Ishchenko, A., Abola, E.E. & Cherezov, V., 2017. Crystallization of Membrane Proteins: An Overview. Protein Crystallography, pp.117-141.
Type: Book-chapter
Authors: Jose M. Martin-Garcia, Chelsie E. Conrad, Garrett Nelson, Natasha Stander, Nadia A. Zatsepin, James Zook, Lan Zhu, James Geiger, Eugene Chun, David Kissick, Mark C. Hilgart, Craig Ogata, Andrii Ishchenko, Nirupa Nagaratnam, Shatabdi Roy-Chowdhury, Jesse Coe, Ganesh Subramanian, Alexander Schaffer, Daniel James, Gihan Ketwala, Nagarajan Venugopalan, Shenglan Xu, Stephen Corcoran, Dale Ferguson, Uwe Weierstall, John C. H. Spence, Vadim Cherezov, Petra Fromme, Robert F. Fischetti, Wei Liu
Citation: Martin-Garcia, J.M. et al., 2017. Serial millisecond crystallography of membrane and soluble protein microcrystals using synchrotron radiation. IUCrJ, 4(4).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Haonan Zhang, Anna Qiao, Dehua Yang, Linlin Yang, Antao Dai, Chris de Graaf, Steffen Reedtz-Runge, Venkatasubramanian Dharmarajan, Hui Zhang, Gye Won Han, Thomas D. Grant, Raymond G. Sierra, Uwe Weierstall, Garrett Nelson, Wei Liu, Yanhong Wu, Limin Ma, Xiaoqing Cai, Guangyao Lin, Xiaoai Wu, Zhi Geng, Yuhui Dong, Gaojie Song, Patrick R. Griffin, Jesper Lau, Vadim Cherezov, Huaiyu Yang, Michael A. Hanson, Raymond C. Stevens, Qiang Zhao, Hualiang Jiang, Ming-Wei Wang, Beili Wu
Citation: Zhang, Haonan et al., 2017. Structure of the full-length glucagon class B G-protein-coupled receptor. Nature.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Xianjun Zhang, Fei Zhao, Yiran Wu, Jun Yang, Gye Won Han, Suwen Zhao, Andrii Ishchenko, Lintao Ye, Xi Lin, Kang Ding, Venkatasubramanian Dharmarajan, Patrick R. Griffin, Cornelius Gati, Garrett Nelson, Mark S. Hunter, Michael A. Hanson, Vadim Cherezov, Raymond C. Stevens, Wenfu Tan, Houchao Tao, Fei Xu
Citation: Zhang, X. et al., 2017. Crystal structure of a multi-domain human smoothened receptor in complex with a super stabilizing ligand. Nature Communications, 8, p.15383.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Andrii Ishchenko, Lingling Peng, Egor Zinovev, Alexey Vlasov, Sung Chang Lee, Alexander Kuklin, Alexey Mishin, Valentin Borshchevskiy, Qinghai Zhang, Vadim Cherezov
Citation: Ishchenko, A. et al., 2017. Chemically Stable Lipids for Membrane Protein Crystallization. Crystal Growth & Design.
Type: Journal-article
Authors: Athiya Mahmud Hanna, Oriol Vendrell, Abbas Ourmazd, Robin Santra
Citation: Hanna, A.M. et al., 2017. Laser control over the ultrafast Coulomb explosion of N22+ after Auger decay: A quantum-dynamics investigation. Physical Review A, 95(4).
Type: Journal-article
Authors: Petra Fromme, John C. H. Spence
Citation: Fromme, P. & Spence, J.C.H., 2017. Split-Second Reactions. Scientific American, 316(5), pp.62-67.
Type: Journal-article
Authors: Justin T. Biel, Michael C. Thompson, Christian N. Cunningham, Jacob E. Corn, James S. Fraser
Citation: Biel, J.T. et al., 2017. Flexibility and Design: Conformational Heterogeneity along the Evolutionary Trajectory of a Redesigned Ubiquitin. Structure, 25(5), pp.739-749.e3.
Type: Journal-article
Authors: Xuanxuan Li, Chun-Ya Chiu, Hsiang-Ju Wang, Stephan Kassemeyer, Sabine Botha, Robert L. Shoeman, Robert M. Lawrence, Christopher Kupitz, Richard Kirian, Daniel James, Dingjie Wang, Garrett Nelson, Marc Messerschmidt, Sébastien Boutet, Garth J. Williams, Elisabeth Hartmann, Aliakbar Jafarpour, Lutz M. Foucar, Anton Barty, Henry Chapman, Mengning Liang, Andreas Menzel, Fenglin Wang, Shibom Basu, Raimund Fromme, R. Bruce Doak, Petra Fromme, Uwe Weierstall, Michael H. Huang, John C. H. Spence, Ilme Schlichting, Brenda G. Hogue, Haiguang Liu
Citation: Li, X. et al., 2017. Diffraction data of core-shell nanoparticles from an X-ray free electron laser. Scientific Data, 4, p.170048.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Benedikt J. Daurer, Kenta Okamoto, Johan Bielecki, Filipe R. N. C. Maia, Kerstin Mühlig, M. Marvin Seibert, Max F. Hantke, Carl Nettelblad, W. Henry Benner, Martin Svenda, Nicuşor Tîmneanu, Tomas Ekeberg, N. Duane Loh, Alberto Pietrini, Alessandro Zani, Asawari D. Rath, Daniel Westphal, Richard A. Kirian, Salah Awel, Max O. Wiedorn, Gijs van der Schot, Gunilla H. Carlsson, Dirk Hasse, Jonas A. Sellberg, Anton Barty, Jakob Andreasson, Sébastien Boutet, Garth Williams, Jason Koglin, Inger Andersson, Janos Hajdu, Daniel S. D. Larsson
Citation: Daurer, B.J. et al., 2017. Experimental strategies for imaging bioparticles with femtosecond hard X-ray pulses. IUCrJ, 4(3).
Type: Journal-article
Authors: Haitao Zhang, Gye Won Han, Alexander Batyuk, Andrii Ishchenko, Kate L. White, Nilkanth Patel, Anastasiia Sadybekov, Beata Zamlynny, Michael T. Rudd, Kaspar Hollenstein, Alexandra Tolstikova, Thomas A. White, Mark S. Hunter, Uwe Weierstall, Wei Liu, Kerim Babaoglu, Eric L. Moore, Ryan D. Katz, Jennifer M. Shipman, Margarita Garcia-Calvo, Sujata Sharma, Payal Sheth, Stephen M. Soisson, Raymond C. Stevens, Vsevolod Katritch, Vadim Cherezov
Citation: Zhang, H. et al., 2017. Structural basis for selectivity and diversity in angiotensin II receptors. Nature, 544(7650), pp.327-332.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Yahli Lorch, Roger D. Kornberg
Citation: Lorch, Y. & Kornberg, R.D., 2017. Chromatin-remodeling for transcription. Quarterly Reviews of Biophysics, 50.
Type: Journal-article
Authors: Dominik Oberthuer, Juraj Knoška, Max O. Wiedorn, Kenneth R. Beyerlein, David A. Bushnell, Elena G. Kovaleva, Michael Heymann, Lars Gumprecht, Richard A. Kirian, Anton Barty, Valerio Mariani, Aleksandra Tolstikova, Luigi Adriano, Salah Awel, Miriam Barthelmess, Katerina Dörner, P. Lourdu Xavier, Oleksandr Yefanov, Daniel R. James, Garrett Nelson, Dingjie Wang, George Calvey, Yujie Chen, Andrea Schmidt, Michael Szczepek, Stefan Frielingsdorf, Oliver Lenz, Edward Snell, Philip J. Robinson, Božidar Šarler, Grega Belšak, Marjan Maček, Fabian Wilde, Andrew Aquila, Sébastien Boutet, Mengning Liang, Mark S. Hunter, Patrick Scheerer, John D. Lipscomb, Uwe Weierstall, Roger D. Kornberg, John C. H. Spence, Lois Pollack, Henry N. Chapman, Saša Bajt
Citation: Oberthuer, D. et al., 2017. Double-flow focused liquid injector for efficient serial femtosecond crystallography. Scientific Reports, 7, p.44628.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Katherine A. Niessen, Mengyang Xu, Alessandro Paciaroni, Andrea Orecchini, Edward H. Snell, Andrea G. Markelz
Citation: Niessen, K.A. et al., 2017. Moving in the Right Direction: Protein Vibrational Steering Function. Biophysical Journal, 112(5), pp.933-942.
Type: Journal-article
Authors: Franklin D Fuller, Sheraz Gul, Ruchira Chatterjee, E Sethe Burgie, Iris D Young, Hugo Lebrette, Vivek Srinivas, Aaron S Brewster, Tara Michels-Clark, Jonathan A Clinger, Babak Andi, Mohamed Ibrahim, Ernest Pastor, Casper de Lichtenberg, Rana Hussein, Christopher J Pollock, Miao Zhang, Claudiu A Stan, Thomas Kroll, Thomas Fransson, Clemens Weninger, Markus Kubin, Pierre Aller, Louise Lassalle, Philipp Bräuer, Mitchell D Miller, Muhamed Amin, Sergey Koroidov, Christian G Roessler, Marc Allaire, Raymond G Sierra, Peter T Docker, James M Glownia, Silke Nelson, Jason E Koglin, Diling Zhu, Matthieu Chollet, Sanghoon Song, Henrik Lemke, Mengning Liang, Dimosthenis Sokaras, Roberto Alonso-Mori, Athina Zouni, Johannes Messinger, Uwe Bergmann, Amie K Boal, J Martin Bollinger, Carsten Krebs, Martin Högbom, George N Phillips, Richard D Vierstra, Nicholas K Sauter, Allen M Orville, Jan Kern, Vittal K Yachandra, Junko Yano
Citation: Fuller, F.D. et al., 2017. Drop-on-demand sample delivery for studying biocatalysts in action at X-ray free-electron lasers. Nature Methods, 14(4), pp.443-449.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jörg Standfuss, John Spence
Citation: Standfuss, J. & Spence, J., 2017. Serial crystallography at synchrotrons and X-ray lasers. IUCrJ, 4(2), pp.100-101.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Sun Kyung Kim, Lindsey Barron, Cynthia S. Hinck, Elyse M. Petrunak, Kristin E. Cano, Avinash Thangirala, Brian Iskra, Molly Brothers, Machell Vonberg, Belinda Leal, Blair Richter, Ravindra Kodali, Alex B. Taylor, Shoucheng Du, Christopher O. Barnes, Traian Sulea, Guillermo Calero, P. John Hart, Matthew J. Hart, Borries Demeler, Andrew P. Hinck
Citation: Kim, S.K. et al., 2017. An Engineered TGF-β Monomer that Functions as a Dominant Negative to Block TGF-β Signaling. Journal of Biological Chemistry, p.jbc.M116.768754.
Type: Journal-article
Authors: Arpan Deb, William A. Johnson, Alexander P. Kline, Boston J. Scott, Lydia R. Meador, Dustin Srinivas, Jose M. Martin-Garcia, Katerina Dörner, Chad R. Borges, Rajeev Misra, Brenda G. Hogue, Petra Fromme, Tsafrir S. Mor
Citation: Deb, A. et al., 2017. Bacterial expression, correct membrane targeting and functional folding of the HIV-1 membrane protein Vpu using a periplasmic signal peptide M. Schindler, ed. PLOS ONE, 12(2), p.e0172529.
Type: Journal-article
Authors: Premila P. Samuel, William C. Ou, George N. Phillips, John S. Olson
Citation: Samuel, P.P. et al., 2017. Mechanism of Human Apohemoglobin Unfolding. Biochemistry, 56(10), pp.1444-1459.
Type: Journal-article
Authors: Hou-Fu Guo, Eun Jeong Cho, Ashwini K. Devkota, Yulong Chen, William Russell, George N. Phillips, Mitsuo Yamauchi, Kevin N. Dalby, Jonathan M. Kurie
Citation: Guo, H.-F. et al., 2017. A scalable lysyl hydroxylase 2 expression system and luciferase-based enzymatic activity assay. Archives of Biochemistry and Biophysics, 618, pp.45-51.
Type: Journal-article
Authors: Alex Plumridge, Steve P. Meisburger, Kurt Andresen, Lois Pollack
Citation: Plumridge, A. et al., 2017. The impact of base stacking on the conformations and electrostatics of single-stranded DNA. Nucleic Acids Research.
Type: Journal-article
Authors: Cornelius Gati, Dominik Oberthuer, Oleksandr Yefanov, Richard D. Bunker, Francesco Stellato, Elaine Chiu, Shin-Mei Yeh, Andrew Aquila, Shibom Basu, Richard Bean, Kenneth R. Beyerlein, Sabine Botha, Sébastien Boutet, Daniel P. DePonte, R. Bruce Doak, Raimund Fromme, Lorenzo Galli, Ingo Grotjohann, Daniel R. James, Christopher Kupitz, Lukas Lomb, Marc Messerschmidt, Karol Nass, Kimberly Rendek, Robert L. Shoeman, Dingjie Wang, Uwe Weierstall, Thomas A. White, Garth J. Williams, Nadia A. Zatsepin, Petra Fromme, John C. H. Spence, Kenneth N. Goldie, Johannes A. Jehle, Peter Metcalf, Anton Barty, Henry N. Chapman
Citation: Gati, C. et al., 2017. Atomic structure of granulin determined from native nanocrystalline granulovirus using an X-ray free-electron laser. Proceedings of the National Academy of Sciences, 114(9), pp.2247-2252.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: M Jason de la Cruz, Johan Hattne, Dan Shi, Paul Seidler, Jose Rodriguez, Francis E Reyes, Michael R Sawaya, Duilio Cascio, Simon C Weiss, Sun Kyung Kim, Cynthia S Hinck, Andrew P Hinck, Guillermo Calero, David Eisenberg, Tamir Gonen
Citation: De la Cruz, M.J. et al., 2017. Atomic-resolution structures from fragmented protein crystals with the cryoEM method MicroED. Nature Methods, 14(4), pp.399-402.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Sherif I Elshahawi, Hongnan Cao, Khaled A Shaaban, Larissa V Ponomareva, Thangaiah Subramanian, Mark L Farman, H Peter Spielmann, George N Phillips, Jon S Thorson, Shanteri Singh
Citation: Elshahawi, S.I. et al., 2017. Structure and specificity of a permissive bacterial C-prenyltransferase. Nature Chemical Biology, 13(4), pp.366-368.
Type: Journal-article
Authors: Ebrahim Aboualizadeh, Mahsa Ranji, Christine M. Sorenson, Reyhaneh Sepehr, Nader Sheibani, Carol J. Hirschmugl
Citation: Aboualizadeh, E. et al., 2017. Retinal oxidative stress at the onset of diabetes determined by synchrotron FTIR widefield imaging: towards diabetes pathogenesis. The Analyst, 142(7), pp.1061-1072.
Type: Journal-article
Authors: Nathan S. Babcock, David A. Sivak, Daniel Keedy, James S. Fraser
Citation: Babcock, N.S. et al., 2017. Model Comparison to Identify Structural Heterogeneity in Protein X-Ray Crystallography. Biophysical Journal, 112(3), p.486a.
Type: Journal-article
Authors: Marius Schmidt
Citation: Schmidt, M., 2017. A short history of structure based research on the photocycle of photoactive yellow protein. Structural Dynamics, 4(3), p.032201.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Shigeki Nagai, Ralph E. Davis, Pierre Jean Mattei, Kyle Patrick Eagen, Roger D. Kornberg
Citation: Nagai, S. et al., 2017. Chromatin potentiates transcription. Proceedings of the National Academy of Sciences, 114(7), pp.1536-1541.
Type: Journal-article
Authors: Madison B. Adolph, Anjuman Ara, Yuqing Feng, Cristina J. Wittkopp, Michael Emerman, James S. Fraser, Linda Chelico
Citation: Adolph, M.B. et al., 2017. Cytidine deaminase efficiency of the lentiviral viral restriction factor APOBEC3C correlates with dimerization. Nucleic Acids Research, 45(6), pp.3378-3394.
Type: Journal-article
Authors: Andrea M. Katz, Igor S. Tolokh, Suzette A. Pabit, Nathan Baker, Alexey V. Onufriev, Lois Pollack
Citation: Katz, A.M. et al., 2017. Spermine Condenses DNA, but Not RNA Duplexes. Biophysical Journal, 112(1), pp.22-30.
Type: Journal-article
Authors: Ryan R. Hughes, Khaled A. Shaaban, Jianjun Zhang, Hongnan Cao, George N. Phillips, Jon S. Thorson
Citation: Hughes, R.R. et al., 2017. OleD Loki as a Catalyst for Tertiary Amine and Hydroxamate Glycosylation. ChemBioChem, 18(4), pp.363-367.
Type: Journal-article
Authors: Yujie Chen, Joshua M. Tokuda, Traci Topping, Steve P. Meisburger, Suzette A. Pabit, Lisa M. Gloss, Lois Pollack
Citation: Chen, Y. et al., 2016. Asymmetric unwrapping of nucleosomal DNA propagates asymmetric opening and dissociation of the histone core. Proceedings of the National Academy of Sciences, 114(2), pp.334-339.
Type: Journal-article
Authors: Silvia Russi, Ana González, Lillian R. Kenner, Daniel A. Keedy, James S. Fraser, Henry van den Bedem
Citation: Russi, S. et al., 2017. Conformational variation of proteins at room temperature is not dominated by radiation damage. Journal of Synchrotron Radiation, 24(1), pp.73-82.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Christopher Kupitz, Jose L. Olmos, Mark Holl, Lee Tremblay, Kanupriya Pande, Suraj Pandey, Dominik Oberthür, Mark Hunter, Mengning Liang, Andrew Aquila, Jason Tenboer, George Calvey, Andrea Katz, Yujie Chen, Max O. Wiedorn, Juraj Knoska, Alke Meents, Valerio Majriani, Tyler Norwood, Ishwor Poudyal, Thomas Grant, Mitchell D. Miller, Weijun Xu, Aleksandra Tolstikova, Andrew Morgan, Markus Metz, Jose M. Martin-Garcia, James D. Zook, Shatabdi Roy-Chowdhury, Jesse Coe, Nirupa Nagaratnam, Domingo Meza, Raimund Fromme, Shibom Basu, Matthias Frank, Thomas White, Anton Barty, Sasa Bajt, Oleksandr Yefanov, Henry N. Chapman, Nadia Zatsepin, Garrett Nelson, Uwe Weierstall, John Spence, Peter Schwander, Lois Pollack, Petra Fromme, Abbas Ourmazd, George N. Phillips, Marius Schmidt
Citation: Kupitz, C. et al., 2017. Structural enzymology using X-ray free electron lasers. Structural Dynamics, 4(4), p.044003.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Alex Plumridge, Steve P. Meisburger, Lois Pollack
Citation: Plumridge, A., Meisburger, S.P. & Pollack, L., 2016. Visualizing single-stranded nucleic acids in solution. Nucleic Acids Research, p.gkw1297.
Type: Journal-article
Authors: Paul V. Jones, Gabriel L. Salmon, Alexandra Ros
Citation: Jones, P.V., Salmon, G.L. & Ros, A., 2017. Continuous Separation of DNA Molecules by Size Using Insulator-Based Dielectrophoresis. Analytical Chemistry, 89(3), pp.1531-1539.
Type: Journal-article
Authors: Yi Zheng, Ling Qin, Natalia V. Ortiz Zacarías, Henk de Vries, Gye Won Han, Martin Gustavsson, Marta Dabros, Chunxia Zhao, Robert J. Cherney, Percy Carter, Dean Stamos, Ruben Abagyan, Vadim Cherezov, Raymond C. Stevens, Adriaan P. IJzerman, Laura H. Heitman, Andrew Tebben, Irina Kufareva, Tracy M. Handel
Citation: Zheng, Y. et al., 2016. Structure of CC chemokine receptor 2 with orthosteric and allosteric antagonists. Nature, 540(7633), pp.458-461.
Type: Journal-article
Authors: Petra Fromme, Andrej Sali
Citation: Fromme, P. & Sali, A., 2016. Editorial overview: Biophysical and molecular biological methods. Current Opinion in Structural Biology, 40, pp.ix-xi.
Type: Journal-article
Authors: Iris D. Young, Mohamed Ibrahim, Ruchira Chatterjee, Sheraz Gul, Franklin D. Fuller, Sergey Koroidov, Aaron S. Brewster, Rosalie Tran, Roberto Alonso-Mori, Thomas Kroll, Tara Michels-Clark, Hartawan Laksmono, Raymond G. Sierra, Claudiu A. Stan, Rana Hussein, Miao Zhang, Lacey Douthit, Markus Kubin, Casper de Lichtenberg, Long Vo Pham, Håkan Nilsson, Mun Hon Cheah, Dmitriy Shevela, Claudio Saracini, Mackenzie A. Bean, Ina Seuffert, Dimosthenis Sokaras, Tsu-Chien Weng, Ernest Pastor, Clemens Weninger, Thomas Fransson, Louise Lassalle, Philipp Bräuer, Pierre Aller, Peter T. Docker, Babak Andi, Allen M. Orville, James M. Glownia, Silke Nelson, Marcin Sikorski, Diling Zhu, Mark S. Hunter, Thomas J. Lane, Andy Aquila, Jason E. Koglin, Joseph Robinson, Mengning Liang, Sébastien Boutet, Artem Y. Lyubimov, Monarin Uervirojnangkoorn, Nigel W. Moriarty, Dorothee Liebschner, Pavel V. Afonine, David G. Waterman, Gwyndaf Evans, Philippe Wernet, Holger Dobbek, William I. Weis, Axel T. Brunger, Petrus H. Zwart, Paul D. Adams, Athina Zouni, Johannes Messinger, Uwe Bergmann, Nicholas K. Sauter, Jan Kern, Vittal K. Yachandra, Junko Yano
Citation: Young, I.D. et al., 2016. Structure of photosystem II and substrate binding at room temperature. Nature, 540(7633), pp.453-457.
Type: Journal-article
Authors: Victoria Kabanova, Marius Schmidt, Friedrich Schotte, Marco Cammarata, Michael Wulff
Citation: Kabanova, V. et al., 2016. Simulations of single-pulse Laue diffraction from proteins with radiation from synchrotron and XFEL sources. Acta Crystallographica Section A Foundations and Advances, 72(a1), pp.s142-s142.
Type: Journal-article
Authors: Przemyslaw Nogly, Valerie Panneels, Garrett Nelson, Cornelius Gati, Tetsunari Kimura, Christopher Milne, Despina Milathianaki, Minoru Kubo, Wenting Wu, Chelsie Conrad, Jesse Coe, Richard Bean, Yun Zhao, Petra Bath, Robert Dods, Rajiv Harimoorthy, Kenneth Beyerlein, Jan Rheinberger, Daniel James, Daniel DePonte, Chufeng Li, Leonardo Sala, Garth Williams, Mark Hunter, Jason E. Koglin, Peter Berntsen, Eriko Nango, So Iwata, Henry Chapman, Petra Fromme, Matthias Frank, Rafael Abela, Sébastien Boutet, Anton Barty, Thomas A. White, Uwe Weierstall, John Spence, Richard Neutze, Gebhard Schertler, Jörg Standfuss
Citation: Nogly, P. et al., 2016. Lipidic cubic phase injector is a viable crystal delivery system for time-resolved serial crystallography. Acta Crystallographica Section A Foundations and Advances, 72(a1), pp.s41-s42.
Type: Journal-article
Authors: Andrew E. Bruno, Alexei S. Soares, Robin L. Owen, Edward H. Snell
Citation: Bruno, A.E. et al., 2016. The use of haptic interfaces and web services in crystallography: an application for a `screen to beam' interface. Journal of Applied Crystallography, 49(6), pp.2082-2090.
Type: Journal-article
Authors: J. R. Stagno, Y. Liu, Y. R. Bhandari, C. E. Conrad, S. Panja, M. Swain, L. Fan, G. Nelson, C. Li, D. R. Wendel, T. A. White, J. D. Coe, M. O. Wiedorn, J. Knoska, D. Oberthuer, R. A. Tuckey, P. Yu, M. Dyba, S. G. Tarasov, U. Weierstall, T. D. Grant, C. D. Schwieters, J. Zhang, A. R. Ferré-D’Amaré, P. Fromme, D. E. Draper, M. Liang, M. S. Hunter, S. Boutet, K. Tan, X. Zuo, X. Ji, A. Barty, N. A. Zatsepin, H. N. Chapman, J. C. H. Spence, S. A. Woodson, Y.-X. Wang
Citation: Stagno, J.R. et al., 2016. Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography. Nature, 541(7636), pp.242-246.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Richard A. Kirian, Salah Awel, Max Wiedorn, Daniel Horke, Nils Roth, Niko O. Eckerskorn, Jochen Küpper, Henry N. Chapman, Andrei V. Rode
Citation: Kirian, R.A. et al., 2016. Development of a photophoretic optical guide for femtosecond x-ray diffractive imaging of aerosolized nanoparticles (Conference Presentation) K. Dholakia & G. C. Spalding, eds. Optical Trapping and Optical Micromanipulation XIII.
Type: Proceedings-article
Authors: Mark S. Hunter, Chun Hong Yoon, Hasan DeMirci, Raymond G. Sierra, E. Han Dao, Radman Ahmadi, Fulya Aksit, Andrew L. Aquila, Halilibrahim Ciftci, Serge Guillet, Matt J. Hayes, Thomas J. Lane, Meng Liang, Ulf Lundström, Jason E. Koglin, Paul Mgbam, Yashas Rao, Lindsey Zhang, Soichi Wakatsuki, James M. Holton, Sébastien Boutet
Citation: Hunter, M.S. et al., 2016. Selenium single-wavelength anomalous diffraction de novo phasing using an X-ray-free electron laser. Nature Communications, 7, p.13388.
Type: Journal-article
Authors: Jian Min Zuo, John C.H. Spence
Citation: Zuo, J.M. & Spence, J.C.H., 2017. Advanced Transmission Electron Microscopy.
Type: Book
Authors: Petra Edlund, Heikki Takala, Elin Claesson, Léocadie Henry, Robert Dods, Heli Lehtivuori, Matthijs Panman, Kanupriya Pande, Thomas White, Takanori Nakane, Oskar Berntsson, Emil Gustavsson, Petra Båth, Vaibhav Modi, Shatabdi Roy-Chowdhury, James Zook, Peter Berntsen, Suraj Pandey, Ishwor Poudyal, Jason Tenboer, Christopher Kupitz, Anton Barty, Petra Fromme, Jake D. Koralek, Tomoyuki Tanaka, John Spence, Mengning Liang, Mark S. Hunter, Sebastien Boutet, Eriko Nango, Keith Moffat, Gerrit Groenhof, Janne Ihalainen, Emina A. Stojković, Marius Schmidt, Sebastian Westenhoff
Citation: Edlund, P. et al., 2016. The room temperature crystal structure of a bacterial phytochrome determined by serial femtosecond crystallography. Scientific Reports, 6(1).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Justin T Biel, Michael C Thompson, Christian N Cunningham, Jacob E Corn, James S Fraser
Citation: Biel, J.T. et al., 2016. Flexibility and design: conformational heterogeneity along the evolutionary trajectory of a redesigned ubiquitin.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Artem Y Lyubimov, Monarin Uervirojnangkoorn, Oliver B Zeldin, Qiangjun Zhou, Minglei Zhao, Aaron S Brewster, Tara Michels-Clark, James M Holton, Nicholas K Sauter, William I Weis, Axel T Brunger
Citation: Lyubimov, A.Y. et al., 2016. Advances in X-ray free electron laser (XFEL) diffraction data processing applied to the crystal structure of the synaptotagmin-1 / SNARE complex. eLife, 5.
Type: Journal-article
Authors: Jin Xiang, Eugene Chun, Chang Liu, Liang Jing, Zina Al-Sahouri, Lan Zhu, Wei Liu
Citation: Xiang, J. et al., 2016. Successful Strategies to Determine High-Resolution Structures of GPCRs. Trends in Pharmacological Sciences, 37(12), pp.1055-1069.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: J P J Chen, R D Arnal, A J Morgan, R J Bean, K R Beyerlein, H N Chapman, P J Bones, R P Millane, R A Kirian
Citation: Chen, J.P.J. et al., 2016. Reconstruction of an object from diffraction intensities averaged over multiple object clusters. Journal of Optics, 18(11), p.114003.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jacques-Philippe Colletier, Michael R. Sawaya, Mari Gingery, Jose A. Rodriguez, Duilio Cascio, Aaron S. Brewster, Tara Michels-Clark, Robert H. Hice, Nicolas Coquelle, Sébastien Boutet, Garth J. Williams, Marc Messerschmidt, Daniel P. DePonte, Raymond G. Sierra, Hartawan Laksmono, Jason E. Koglin, Mark S. Hunter, Hyun-Woo Park, Monarin Uervirojnangkoorn, Dennis K. Bideshi, Axel T. Brunger, Brian A. Federici, Nicholas K. Sauter, David S. Eisenberg
Citation: Colletier, J.-P. et al., 2016. De novo phasing with X-ray laser reveals mosquito larvicide BinAB structure. Nature, 539(7627), pp.43-47.
Type: Journal-article
Authors: Derek Mendez, Herschel Watkins, Shenglan Qiao, Kevin S. Raines, Thomas J. Lane, Gundolf Schenk, Garrett Nelson, Ganesh Subramanian, Kensuke Tono, Yasumasa Joti, Makina Yabashi, Daniel Ratner, Sebastian Doniach
Citation: Mendez, D. et al., 2016. Angular correlations of photons from solution diffraction at a free-electron laser encode molecular structure. IUCrJ, 3(6), pp.420-429.
Type: Journal-article
Authors: A. Batyuk, L. Galli, A. Ishchenko, G. W. Han, C. Gati, P. A. Popov, M.-Y. Lee, B. Stauch, T. A. White, A. Barty, A. Aquila, M. S. Hunter, M. Liang, S. Boutet, M. Pu, Z.-j. Liu, G. Nelson, D. James, C. Li, Y. Zhao, J. C. H. Spence, W. Liu, P. Fromme, V. Katritch, U. Weierstall, R. C. Stevens, V. Cherezov
Citation: Batyuk, A. et al., 2016. Native phasing of x-ray free-electron laser data for a G protein-coupled receptor. Science Advances, 2(9), pp.e1600292-e1600292.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Nicoleta Herascu, Mark S. Hunter, Golia Shafiei, Mehdi Najafi, T. Wade Johnson, Petra Fromme, Valter Zazubovich
Citation: Herascu, N. et al., 2016. Spectral Hole Burning in Cyanobacterial Photosystem I with P700 in Oxidized and Neutral States. The Journal of Physical Chemistry B, 120(40), pp.10483-10495.
Type: Journal-article
Authors: Andrii Ishchenko, Vadim Cherezov, Wei Liu
Citation: Ishchenko, A., Cherezov, V. & Liu, W., 2016. Preparation and Delivery of Protein Microcrystals in Lipidic Cubic Phase for Serial Femtosecond Crystallography. Journal of Visualized Experiments, (115).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jakub Szlachetko, Joanna Hoszowska, Jean-Claude Dousse, Maarten Nachtegaal, Wojciech Błachucki, Yves Kayser, Jacinto Sà, Marc Messerschmidt, Sebastien Boutet, Garth J. Williams, Christian David, Grigory Smolentsev, Jeroen A. van Bokhoven, Bruce D. Patterson, Thomas J. Penfold, Gregor Knopp, Marek Pajek, Rafael Abela, Christopher J. Milne
Citation: Szlachetko, J. et al., 2016. Establishing nonlinearity thresholds with ultraintense X-ray pulses. Scientific Reports, 6(1).
Type: Journal-article
Authors: B. Abbey, R. A. Dilanian, C. Darmanin, R. A. Ryan, C. T. Putkunz, A. V. Martin, D. Wood, V. Streltsov, M. W. M. Jones, N. Gaffney, F. Hofmann, G. J. Williams, S. Boutet, M. Messerschmidt, M. M. Seibert, S. Williams, E. Curwood, E. Balaur, A. G. Peele, K. A. Nugent, H. M. Quiney
Citation: Abbey, B. et al., 2016. X-ray laser-induced electron dynamics observed by femtosecond diffraction from nanocrystals of Buckminsterfullerene. Science Advances, 2(9), pp.e1601186-e1601186.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Philip J. Robinson, Michael J. Trnka, David A. Bushnell, Ralph E. Davis, Pierre-Jean Mattei, Alma L. Burlingame, Roger D. Kornberg
Citation: Robinson, P.J. et al., 2016. Structure of a Complete Mediator-RNA Polymerase II Pre-Initiation Complex. Cell, 166(6), pp.1411-1422.e16.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Dilano Saldin
Citation: Saldin, D., 2016. Ghost imaging with x rays. Physics, 9.
Type: Journal-article
Authors: Roger Falcone, Michael Dunne, Henry Chapman, Makina Yabashi, Kiyoshi Ueda
Citation: Falcone, R. et al., 2016. Frontiers of free-electron laser science II. Journal of Physics B: Atomic, Molecular and Optical Physics, 49(18), p.180201.
Type: Journal-article
Authors: George D. Calvey, Andrea M. Katz, Chris B. Schaffer, Lois Pollack
Citation: Calvey, G.D. et al., 2016. Mixing injector enables time-resolved crystallography with high hit rate at X-ray free electron lasers. Structural Dynamics, 3(5), p.054301.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Ying Wu, Xiaohong Zhou, Christopher O Barnes, Maria DeLucia, Aina E Cohen, Angela M Gronenborn, Jinwoo Ahn, Guillermo Calero
Citation: Wu, Y. et al., 2016. The DDB1-DCAF1-Vpr-UNG2 crystal structure reveals how HIV-1 Vpr steers human UNG2 toward destruction. Nature Structural & Molecular Biology, 23(10), pp.933-940.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Chin-Yuan Chang, Jeremy R. Lohman, Hongnan Cao, Kemin Tan, Jeffrey D. Rudolf, Ming Ma, Weijun Xu, Craig A. Bingman, Ragothaman M. Yennamalli, Lance Bigelow, Gyorgy Babnigg, Xiaohui Yan, Andrzej Joachimiak, George N. Phillips, Ben Shen
Citation: Chang, C.-Y. et al., 2016. Crystal Structures of SgcE6 and SgcC, the Two-Component Monooxygenase That Catalyzes Hydroxylation of a Carrier Protein-Tethered Substrate during the Biosynthesis of the Enediyne Antitumor Antibiotic C-1027 inStreptomyces globisporus. Biochemistry, 55(36), pp.5142-5154.
Type: Journal-article
Authors: John Spence
Citation: Spence, J., 2016. Electron Crystallography, Charge-Density Mapping and Nanodiffraction. Transmission Electron Microscopy, pp.145-166.
Type: Book-chapter
Authors: Lan Zhu, Uwe Weierstall, Vadim Cherezov, Wei Liu
Citation: Zhu, L. et al., 2016. Serial Femtosecond Crystallography of Membrane Proteins. The Next Generation in Membrane Protein Structure Determination, pp.151-160.
Type: Book-chapter
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Przemyslaw Nogly, Valerie Panneels, Garrett Nelson, Cornelius Gati, Tetsunari Kimura, Christopher Milne, Despina Milathianaki, Minoru Kubo, Wenting Wu, Chelsie Conrad, Jesse Coe, Richard Bean, Yun Zhao, Petra Båth, Robert Dods, Rajiv Harimoorthy, Kenneth R. Beyerlein, Jan Rheinberger, Daniel James, Daniel DePonte, Chufeng Li, Leonardo Sala, Garth J. Williams, Mark S. Hunter, Jason E. Koglin, Peter Berntsen, Eriko Nango, So Iwata, Henry N. Chapman, Petra Fromme, Matthias Frank, Rafael Abela, Sébastien Boutet, Anton Barty, Thomas A. White, Uwe Weierstall, John Spence, Richard Neutze, Gebhard Schertler, Jörg Standfuss
Citation: Nogly, P. et al., 2016. Lipidic cubic phase injector is a viable crystal delivery system for time-resolved serial crystallography. Nature Communications, 7, p.12314.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jeffrey D. Rudolf, Liao-Bin Dong, Hongnan Cao, Catherine Hatzos-Skintges, Jerzy Osipiuk, Michael Endres, Chin-Yuan Chang, Ming Ma, Gyorgy Babnigg, Andrzej Joachimiak, George N. Phillips, Ben Shen
Citation: Rudolf, J.D. et al., 2016. Structure of the ent -Copalyl Diphosphate Synthase PtmT2 from Streptomyces platensis CB00739, a Bacterial Type II Diterpene Synthase . Journal of the American Chemical Society, 138(34), pp.10905-10915.
Type: Journal-article
Authors: Mausumi Mahapatra, Luke Burkholder, Michael Garvey, Yun Bai, Dilano K. Saldin, Wilfred T. Tysoe
Citation: Mahapatra, M. et al., 2016. Enhanced hydrogenation activity and diastereomeric interactions of methyl pyruvate co-adsorbed with R-1-(1-naphthyl)ethylamine on Pd(111). Nature Communications, 7, p.12380.
Type: Journal-article
Authors: Ming Yan, Srinivas Chakravarthy, Joshua M. Tokuda, Lois Pollack, Gregory D. Bowman, Young-Sam Lee
Citation: Yan, M. et al., 2016. Succinyl-5-aminoimidazole-4-carboxamide-1-ribose 5′-Phosphate (SAICAR) Activates Pyruvate Kinase Isoform M2 (PKM2) in Its Dimeric Form. Biochemistry, 55(33), pp.4731-4736.
Type: Journal-article
Authors: Anna Munke, Jakob Andreasson, Andrew Aquila, Salah Awel, Kartik Ayyer, Anton Barty, Richard J. Bean, Peter Berntsen, Johan Bielecki, Sébastien Boutet, Maximilian Bucher, Henry N. Chapman, Benedikt J. Daurer, Hasan DeMirci, Veit Elser, Petra Fromme, Janos Hajdu, Max F. Hantke, Akifumi Higashiura, Brenda G. Hogue, Ahmad Hosseinizadeh, Yoonhee Kim, Richard A. Kirian, Hemanth K.N. Reddy, Ti-Yen Lan, Daniel S.D. Larsson, Haiguang Liu, N. Duane Loh, Filipe R.N.C. Maia, Adrian P. Mancuso, Kerstin Mühlig, Atsushi Nakagawa, Daewoong Nam, Garrett Nelson, Carl Nettelblad, Kenta Okamoto, Abbas Ourmazd, Max Rose, Gijs van der Schot, Peter Schwander, M. Marvin Seibert, Jonas A. Sellberg, Raymond G. Sierra, Changyong Song, Martin Svenda, Nicusor Timneanu, Ivan A. Vartanyants, Daniel Westphal, Max O. Wiedorn, Garth J. Williams, Paulraj Lourdu Xavier, Chun Hong Yoon, James Zook
Citation: Munke, A. et al., 2016. Coherent diffraction of single Rice Dwarf virus particles using hard X-rays at the Linac Coherent Light Source. Scientific Data, 3, p.160064.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Max F. Hantke, Dirk Hasse, Tomas Ekeberg, Katja John, Martin Svenda, Duane Loh, Andrew V. Martin, Nicusor Timneanu, Daniel S.D. Larsson, Gijs van der Schot, Gunilla H. Carlsson, Margareta Ingelman, Jakob Andreasson, Daniel Westphal, Bianca Iwan, Charlotte Uetrecht, Johan Bielecki, Mengning Liang, Francesco Stellato, Daniel P. DePonte, Sadia Bari, Robert Hartmann, Nils Kimmel, Richard A. Kirian, M. Marvin Seibert, Kerstin Mühlig, Sebastian Schorb, Ken Ferguson, Christoph Bostedt, Sebastian Carron, John D. Bozek, Daniel Rolles, Artem Rudenko, Lutz Foucar, Sascha W. Epp, Henry N. Chapman, Anton Barty, Inger Andersson, Janos Hajdu, Filipe R.N.C. Maia
Citation: Hantke, M.F. et al., 2016. A data set from flash X-ray imaging of carboxysomes. Scientific Data, 3, p.160061.
Type: Journal-article
Authors: Tomas Ekeberg, Martin Svenda, M. Marvin Seibert, Chantal Abergel, Filipe R.N.C. Maia, Virginie Seltzer, Daniel P. DePonte, Andrew Aquila, Jakob Andreasson, Bianca Iwan, Olof Jönsson, Daniel Westphal, Duško Odić, Inger Andersson, Anton Barty, Meng Liang, Andrew V. Martin, Lars Gumprecht, Holger Fleckenstein, Saša Bajt, Miriam Barthelmess, Nicola Coppola, Jean-Michel Claverie, N. Duane Loh, Christoph Bostedt, John D. Bozek, Jacek Krzywinski, Marc Messerschmidt, Michael J. Bogan, Christina Y. Hampton, Raymond G. Sierra, Matthias Frank, Robert L. Shoeman, Lukas Lomb, Lutz Foucar, Sascha W. Epp, Daniel Rolles, Artem Rudenko, Robert Hartmann, Andreas Hartmann, Nils Kimmel, Peter Holl, Georg Weidenspointner, Benedikt Rudek, Benjamin Erk, Stephan Kassemeyer, Ilme Schlichting, Lothar Strüder, Joachim Ullrich, Carlo Schmidt, Faton Krasniqi, Günter Hauser, Christian Reich, Heike Soltau, Sebastian Schorb, Helmut Hirsemann, Cornelia Wunderer, Heinz Graafsma, Henry Chapman, Janos Hajdu
Citation: Ekeberg, T. et al., 2016. Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser. Scientific Data, 3, p.160060.
Type: Journal-article
Authors: Gijs van der Schot, Martin Svenda, Filipe R.N.C. Maia, Max F. Hantke, Daniel P. DePonte, M. Marvin Seibert, Andrew Aquila, Joachim Schulz, Richard A. Kirian, Mengning Liang, Francesco Stellato, Sadia Bari, Bianca Iwan, Jakob Andreasson, Nicusor Timneanu, Johan Bielecki, Daniel Westphal, Francisca Nunes de Almeida, Duško Odić, Dirk Hasse, Gunilla H. Carlsson, Daniel S.D. Larsson, Anton Barty, Andrew V. Martin, Sebastian Schorb, Christoph Bostedt, John D. Bozek, Sebastian Carron, Ken Ferguson, Daniel Rolles, Artem Rudenko, Sascha W. Epp, Lutz Foucar, Benedikt Rudek, Benjamin Erk, Robert Hartmann, Nils Kimmel, Peter Holl, Lars Englert, N. Duane Loh, Henry N. Chapman, Inger Andersson, Janos Hajdu, Tomas Ekeberg
Citation: Van der Schot, G. et al., 2016. Open data set of live cyanobacterial cells imaged using an X-ray laser. Scientific Data, 3, p.160058.
Type: Journal-article
Authors: Thomas A. White, Anton Barty, Wei Liu, Andrii Ishchenko, Haitao Zhang, Cornelius Gati, Nadia A. Zatsepin, Shibom Basu, Dominik Oberthür, Markus Metz, Kenneth R. Beyerlein, Chun Hong Yoon, Oleksandr M. Yefanov, Daniel James, Dingjie Wang, Marc Messerschmidt, Jason E. Koglin, Sébastien Boutet, Uwe Weierstall, Vadim Cherezov
Citation: White, T.A. et al., 2016. Serial femtosecond crystallography datasets from G protein-coupled receptors. Scientific Data, 3, p.160057.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Robert M. Lawrence, James D. Zook, Brenda G. Hogue
Citation: Lawrence, R.M., Zook, J.D. & Hogue, B.G., 2016. Full inactivation of alphaviruses in single particle and crystallized forms. Journal of Virological Methods, 236, pp.237-244.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Haiguang Liu, John C. H. Spence
Citation: Liu, H. & Spence, J.C.H., 2016. XFEL data analysis for structural biology. Quantitative Biology, 4(3), pp.159-176.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Hongxing He, Hengrui Fang, Mitchell D. Miller, George N. Phillips, Wu-Pei Su
Citation: He, H. et al., 2016. Improving the efficiency of molecular replacement by utilizing a new iterative transform phasing algorithm. Acta Crystallographica Section A Foundations and Advances, 72(5), pp.539-547.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Tingting Huang, Chin-Yuan Chang, Jeremy R Lohman, Jeffrey D Rudolf, Youngchang Kim, Changsoo Chang, Dong Yang, Ming Ma, Xiaohui Yan, Ivana Crnovcic, Lance Bigelow, Shonda Clancy, Craig A Bingman, Ragothaman M Yennamalli, Gyorgy Babnigg, Andrzej Joachimiak, George N Phillips, Ben Shen
Citation: Huang, T. et al., 2016. Crystal structure of SgcJ, an NTF2-like superfamily protein involved in biosynthesis of the nine-membered enediyne antitumor antibiotic C-1027. The Journal of Antibiotics, 69(10), pp.731-740.
Type: Journal-article
Authors: Aleksander V. Drozdetski, Igor S. Tolokh, Lois Pollack, Nathan Baker, Alexey V. Onufriev
Citation: Drozdetski, A.V. et al., 2016. Opposing Effects of Multivalent Ions on the Flexibility of DNA and RNA. Physical Review Letters, 117(2).
Type: Journal-article
Authors: Tyler D. Huber, Fengbin Wang, Shanteri Singh, Brooke R. Johnson, Jianjun Zhang, Manjula Sunkara, Steven G. Van Lanen, Andrew J. Morris, George N. Phillips, Jon S. Thorson
Citation: Huber, T.D. et al., 2016. Functional AdoMet Isosteres Resistant to Classical AdoMet Degradation Pathways. ACS Chemical Biology, 11(9), pp.2484-2491.
Type: Journal-article
Authors: John Spence, Eaton Lattman
Citation: Spence, J. & Lattman, E., 2016. Imaging enzyme kinetics at atomic resolution. IUCrJ, 3(4), pp.228-229.
Type: Journal-article
Authors: Ximeng Y. Dow, Christopher M. Dettmar, Emma L. DeWalt, Justin A. Newman, Alexander R. Dow, Shatabdi Roy-Chowdhury, Jesse D. Coe, Christopher Kupitz, Petra Fromme, Garth J. Simpson
Citation: Dow, X.Y. et al., 2016. Second harmonic generation correlation spectroscopy for characterizing translationally diffusing protein nanocrystals. Acta Crystallographica Section D Structural Biology, 72(7), pp.849-859.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Mahsa Ranji, Mohammad M. Motlagh, Fahimeh Salehpor, Reyhaneh Sepehr, James S. Heisner, Ranjan K. Dash, Amadou K. S. Camara
Citation: Ranji, M. et al., 2016. Optical Cryoimaging Reveals a Heterogeneous Distribution of Mitochondrial Redox State in ex vivo Guinea Pig Hearts and its Alteration during Ischemia and Reperfusion. IEEE Journal of Translational Engineering in Health and Medicine, pp.1-1.
Type: Journal-article
Authors: Hung T. Nguyen, Suzette A. Pabit, Lois Pollack, David A. Case
Citation: Nguyen, H.T. et al., 2016. Extracting water and ion distributions from solution x-ray scattering experiments. The Journal of Chemical Physics, 144(21), p.214105.
Type: Journal-article
Authors: Mian Yang, Randall Nelson, Alexandra Ros
Citation: Yang, M., Nelson, R. & Ros, A., 2016. Toward Analysis of Proteins in Single Cells: A Quantitative Approach Employing Isobaric Tags with MALDI Mass Spectrometry Realized with a Microfluidic Platform. Analytical Chemistry, 88(13), pp.6672-6679.
Type: Journal-article
Authors: Suzette A. Pabit, Andrea M. Katz, Igor S. Tolokh, Aleksander Drozdetski, Nathan Baker, Alexey V. Onufriev, Lois Pollack
Citation: Pabit, S.A. et al., 2016. Understanding nucleic acid structural changes by comparing wide-angle x-ray scattering (WAXS) experiments to molecular dynamics simulations. The Journal of Chemical Physics, 144(20), p.205102.
Type: Journal-article
Authors: Valerio Mariani, Andrew Morgan, Chun Hong Yoon, Thomas J. Lane, Thomas A. White, Christopher O'Grady, Manuela Kuhn, Steve Aplin, Jason Koglin, Anton Barty, Henry N. Chapman
Citation: Mariani, V. et al., 2016. OnDA: online data analysis and feedback for serial X-ray imaging. Journal of Applied Crystallography, 49(3), pp.1073-1080.
Type: Journal-article
Authors: Claudiu A. Stan, Despina Milathianaki, Hartawan Laksmono, Raymond G. Sierra, Trevor A. McQueen, Marc Messerschmidt, Garth J. Williams, Jason E. Koglin, Thomas J. Lane, Matt J. Hayes, Serge A. H. Guillet, Mengning Liang, Andrew L. Aquila, Philip R. Willmott, Joseph S. Robinson, Karl L. Gumerlock, Sabine Botha, Karol Nass, Ilme Schlichting, Robert L. Shoeman, Howard A. Stone, Sébastien Boutet
Citation: Stan, C.A. et al., 2016. Liquid explosions induced by X-ray laser pulses. Nature Physics, 12(10), pp.966-971.
Type: Journal-article
Authors: J. M. Berg, N. Bhalla, P. E. Bourne, M. Chalfie, D. G. Drubin, J. S. Fraser, C. W. Greider, M. Hendricks, C. Jones, R. Kiley, S. King, M. W. Kirschner, H. M. Krumholz, R. Lehmann, M. Leptin, B. Pulverer, B. Rosenzweig, J. E. Spiro, M. Stebbins, C. Strasser, S. Swaminathan, P. Turner, R. D. Vale, K. VijayRaghavan, C. Wolberger
Citation: Berg, J.M. et al., 2016. Preprints for the life sciences. Science, 352(6288), pp.899-901.
Type: Journal-article
Authors: A. V. Mishin, A. P. Luginina, A. P. Potapenko, V. I. Borshchevskiy, V. Katritch, E. Edelweiss, I. S. Okhrimenko, V. I. Gordeliy, V. G. Cherezov
Citation: Mishin, A.V. et al., 2016. Expression and purification of an engineered human endothelin receptor B in a monomeric form. Doklady Biochemistry and Biophysics, 467(1), pp.157-161.
Type: Journal-article
Authors: Garrett Nelson, Richard A. Kirian, Uwe Weierstall, Nadia A. Zatsepin, Tomáš Faragó, Tilo Baumbach, Fabian Wilde, Fabian B. P. Niesler, Benjamin Zimmer, Izumi Ishigami, Masahide Hikita, Saša Bajt, Syun-Ru Yeh, Denis L. Rousseau, Henry N. Chapman, John C. H. Spence, Michael Heymann
Citation: Nelson, G. et al., 2016. Three-dimensional-printed gas dynamic virtual nozzles for x-ray laser sample delivery. Optics Express, 24(11), p.11515.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Richard A. Kirian, Henry N. Chapman
Citation: Kirian, R.A. & Chapman, H.N., 2016. Imaging of Objects by Coherent Diffraction of X-Ray Free-Electron Laser Pulses. Synchrotron Light Sources and Free-Electron Lasers, pp.1135-1195.
Type: Book-chapter
Authors: Katerina Dörner, Jose M. Martin-Garcia, Christopher Kupitz, Zhen Gong, T. Conn Mallet, Liqing Chen, Rebekka M. Wachter, Petra Fromme
Citation: Dörner, K. et al., 2016. Characterization of Protein Nanocrystals Based on the Reversibility of Crystallization. Crystal Growth & Design, 16(7), pp.3838-3845.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: K. Pande, C. D. M. Hutchison, G. Groenhof, A. Aquila, J. S. Robinson, J. Tenboer, S. Basu, S. Boutet, D. P. DePonte, M. Liang, T. A. White, N. A. Zatsepin, O. Yefanov, D. Morozov, D. Oberthuer, C. Gati, G. Subramanian, D. James, Y. Zhao, J. Koralek, J. Brayshaw, C. Kupitz, C. Conrad, S. Roy-Chowdhury, J. D. Coe, M. Metz, P. L. Xavier, T. D. Grant, J. E. Koglin, G. Ketawala, R. Fromme, V.  rajer, R. Henning, J. C. H. Spence, A. Ourmazd, P. Schwander, U. Weierstall, M. Frank, P. Fromme, A. Barty, H. N. Chapman, K. Moffat, J. J. van Thor, M. Schmidt
Citation: Pande, K. et al., 2016. Femtosecond structural dynamics drives the trans/cis isomerization in photoactive yellow protein. Science, 352(6286), pp.725-729.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jinghui Luo, Katherine A. Muratore, Edgar A. Arriaga, Alexandra Ros
Citation: Luo, J. et al., 2016. Deterministic Absolute Negative Mobility for Micro- and Submicrometer Particles Induced in a Microfluidic Device. Analytical Chemistry, 88(11), pp.5920-5927.
Type: Journal-article
Authors: Jose M. Martin-Garcia, Chelsie E. Conrad, Jesse Coe, Shatabdi Roy-Chowdhury, Petra Fromme
Citation: Martin-Garcia, J.M. et al., 2016. Serial femtosecond crystallography: A revolution in structural biology. Archives of Biochemistry and Biophysics, 602, pp.32-47.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Christopher D.M. Hutchison, Marius Kaucikas, Jason Tenboer, Christopher Kupitz, Keith Moffat, Marius Schmidt, Jasper J. van Thor
Citation: Hutchison, C.D.M. et al., 2016. Photocycle populations with femtosecond excitation of crystalline photoactive yellow protein. Chemical Physics Letters, 654, pp.63-71.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Hongnan Cao, Kemin Tan, Fengbin Wang, Lance Bigelow, Ragothaman M. Yennamalli, Robert Jedrzejczak, Gyorgy Babnigg, Craig A. Bingman, Andrzej Joachimiak, Madan K. Kharel, Shanteri Singh, Jon S. Thorson, George N. Phillips
Citation: Cao, H. et al., 2016. Structural dynamics of a methionine γ-lyase for calicheamicin biosynthesis: Rotation of the conserved tyrosine stacking with pyridoxal phosphate. Structural Dynamics, 3(3), p.034702.
Type: Journal-article
Authors: Ray Yu-Ruei Wang, Yifan Song, Benjamin Barad, Yifan Cheng, James Fraser, Frank DiMaio
Citation: Wang, R.Y.-R. et al., 2016. Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: R. Fung, A. Ourmazd, A. M. Hanna, O. Vendrell, S. Ramakrishna, T. Seideman, R. Santra, A. Ourmazd
Citation: Fung, R. et al., 2016. Dynamics from noisy data with extreme timing uncertainty. Nature, 532(7600), pp.471-475.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Hilary P. Stevenson, Guowu Lin, Christopher O. Barnes, Ieva Sutkeviciute, Troy Krzysiak, Simon C. Weiss, Shelley Reynolds, Ying Wu, Veeranagu Nagarajan, Alexander M. Makhov, Robert Lawrence, Emily Lamm, Lisa Clark, Timothy J. Gardella, Brenda G. Hogue, Craig M. Ogata, Jinwoo Ahn, Angela M. Gronenborn, James F. Conway, Jean-Pierre Vilardaga, Aina E. Cohen, Guillermo Calero
Citation: Stevenson, H.P. et al., 2016. Transmission electron microscopy for the evaluation and optimization of crystal growth. Acta Crystallographica Section D Structural Biology, 72(5), pp.603-615.
Type: Journal-article
Citation: Anon, 2016. Correction for Thomaston et al., High-resolution structures of the M2 channel from influenza A virus reveal dynamic pathways for proton stabilization and transduction. Proceedings of the National Academy of Sciences, 113(18), pp.E2548-E2548.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: David Mavor, Kyle Barlow, Samuel Thompson, Benjamin A Barad, Alain R Bonny, Clinton L Cario, Garrett Gaskins, Zairan Liu, Laura Deming, Seth D Axen, Elena Caceres, Weilin Chen, Adolfo Cuesta, Rachel E Gate, Evan M Green, Kaitlin R Hulce, Weiyue Ji, Lillian R Kenner, Bruk Mensa, Leanna S Morinishi, Steven M Moss, Marco Mravic, Ryan K Muir, Stefan Niekamp, Chimno I Nnadi, Eugene Palovcak, Erin M Poss, Tyler D Ross, Eugenia C Salcedo, Stephanie K See, Meena Subramaniam, Allison W Wong, Jennifer Li, Kurt S Thorn, Shane Ó Conchúir, Benjamin P Roscoe, Eric D Chow, Joseph L DeRisi, Tanja Kortemme, Daniel N Bolon, James S Fraser
Citation: Mavor, D. et al., 2016. Determination of ubiquitin fitness landscapes under different chemical stresses in a classroom setting. eLife, 5.
Type: Journal-article
Authors: Igor S. Tolokh, Aleksander V. Drozdetski, Lois Pollack, Nathan A. Baker, Alexey V. Onufriev
Citation: Tolokh, I.S. et al., 2016. Multi-shell model of ion-induced nucleic acid condensation. The Journal of Chemical Physics, 144(15), p.155101.
Type: Journal-article
Authors: Yujie Chen, Lois Pollack
Citation: Chen, Y. & Pollack, L., 2016. SAXS studies of RNA: structures, dynamics, and interactions with partners. WIREs RNA.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: X. Edward Zhou, Xiang Gao, Anton Barty, Yanyong Kang, Yuanzheng He, Wei Liu, Andrii Ishchenko, Thomas A. White, Oleksandr Yefanov, Gye Won Han, Qingping Xu, Parker W. de Waal, Kelly M. Suino-Powell, Sébastien Boutet, Garth J. Williams, Meitian Wang, Dianfan Li, Martin Caffrey, Henry N. Chapman, John C.H. Spence, Petra Fromme, Uwe Weierstall, Raymond C. Stevens, Vadim Cherezov, Karsten Melcher, H. Eric Xu
Citation: Zhou, X.E. et al., 2016. X-ray laser diffraction for structure determination of the rhodopsin-arrestin complex. Sci. Data, 3, p.160021.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Maia Azubel, Roger D. Kornberg
Citation: Azubel, M. & Kornberg, R.D., 2016. Synthesis of Water-Soluble, Thiolate-Protected Gold Nanoparticles Uniform in Size. Nano Letters, 16(5), pp.3348-3351.
Type: Journal-article
Authors: Joshua M. Tokuda, Suzette A. Pabit, Lois Pollack
Citation: Tokuda, J.M., Pabit, S.A. & Pollack, L., 2016. Protein-DNA and ion-DNA interactions revealed through contrast variation SAXS. Biophysical Reviews, 8(2), pp.139-149.
Type: Journal-article
Authors: Thomas A. White, Valerio Mariani, Wolfgang Brehm, Oleksandr Yefanov, Anton Barty, Kenneth R. Beyerlein, Fedor Chervinskii, Lorenzo Galli, Cornelius Gati, Takanori Nakane, Alexandra Tolstikova, Keitaro Yamashita, Chun Hong Yoon, Kay Diederichs, Henry N. Chapman
Citation: White, T.A. et al., 2016. Recent developments in CrystFEL . J Appl Crystallogr, 49(2), pp.680-689.
Type: Journal-article
Authors: Andrew H. Van Benschoten, Lin Liu, Ana Gonzalez, Aaron S. Brewster, Nicholas K. Sauter, James S. Fraser, Michael E. Wall
Citation: Van Benschoten, A.H. et al., 2016. Measuring and modeling diffuse scattering in protein X-ray crystallography. Proceedings of the National Academy of Sciences, 113(15), pp.4069-4074.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Matthew A. Coleman, Jenny A. Cappuccio, Craig D. Blanchette, Tingjuan Gao, Erin S. Arroyo, Angela K. Hinz, Feliza A. Bourguet, Brent Segelke, Paul D. Hoeprich, Thomas Huser, Ted A. Laurence, Vladimir L. Motin, Brett A. Chromy
Citation: Coleman, M.A. et al., 2016. Expression and Association of the Yersinia pestis Translocon Proteins, YopB and YopD, Are Facilitated by Nanolipoprotein Particles M. Skurnik, ed. PLoS ONE, 11(3), p.e0150166.
Type: Journal-article
Authors: Sarah A. Kessans, Mark D. Linhart, Lydia R. Meador, Jacquelyn Kilbourne, Brenda G. Hogue, Petra Fromme, Nobuyuki Matoba, Tsafrir S. Mor
Citation: Kessans, S.A. et al., 2016. Immunological Characterization of Plant-Based HIV-1 Gag/Dgp41 Virus-Like Particles M. L. Alvarez, ed. PLoS ONE, 11(3), p.e0151842.
Type: Journal-article
Authors: Salah Awel, Richard A. Kirian, Niko Eckerskorn, Max Wiedorn, Daniel A. Horke, Andrei V. Rode, Jochen Küpper, Henry N. Chapman
Citation: Awel, S. et al., 2016. Visualizing aerosol-particle injection for diffractive-imaging experiments. Optics Express, 24(6), p.6507.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Matthias Fuchs
Citation: Fuchs, M., 2016. Anomalous Nonlinear X-ray Compton Scattering. High-Brightness Sources and Light-Driven Interactions.
Type: Proceedings-article
Authors: Peter A. Meyer, Stephanie Socias, Jason Key, Elizabeth Ransey, Emily C. Tjon, Alejandro Buschiazzo, Ming Lei, Chris Botka, James Withrow, David Neau, Kanagalaghatta Rajashankar, Karen S. Anderson, Richard H. Baxter, Stephen C. Blacklow, Titus J. Boggon, Alexandre M. J. J. Bonvin, Dominika Borek, Tom J. Brett, Amedeo Caflisch, Chung-I Chang, Walter J. Chazin, Kevin D. Corbett, Michael S. Cosgrove, Sean Crosson, Sirano Dhe-Paganon, Enrico Di Cera, Catherine L. Drennan, Michael J. Eck, Brandt F. Eichman, Qing R. Fan, Adrian R. Ferré-D'Amaré, J. Christopher Fromme, K. Christopher Garcia, Rachelle Gaudet, Peng Gong, Stephen C. Harrison, Ekaterina E. Heldwein, Zongchao Jia, Robert J. Keenan, Andrew C. Kruse, Marc Kvansakul, Jason S. McLellan, Yorgo Modis, Yunsun Nam, Zbyszek Otwinowski, Emil F. Pai, Pedro José Barbosa Pereira, Carlo Petosa, C. S. Raman, Tom A. Rapoport, Antonina Roll-Mecak, Michael K. Rosen, Gabby Rudenko, Joseph Schlessinger, Thomas U. Schwartz, Yousif Shamoo, Holger Sondermann, Yizhi J. Tao, Niraj H. Tolia, Oleg V. Tsodikov, Kenneth D. Westover, Hao Wu, Ian Foster, James S. Fraser, Filipe R. N C. Maia, Tamir Gonen, Tom Kirchhausen, Kay Diederichs, Mercè Crosas, Piotr Sliz
Citation: Meyer, P.A. et al., 2016. Data publication with the structural biology data grid supports live analysis. Nature Communications, 7, p.10882.
Type: Journal-article
Authors: Christopher O. Barnes, Elena G. Kovaleva, Xiaofeng Fu, Hilary P. Stevenson, Aaron S. Brewster, Daniel P. DePonte, Elizabeth L. Baxter, Aina E. Cohen, Guillermo Calero
Citation: Barnes, C.O. et al., 2016. Assessment of microcrystal quality by transmission electron microscopy for efficient serial femtosecond crystallography. Archives of Biochemistry and Biophysics, 602, pp.61-68.
Type: Journal-article
Authors: F.X. Kärtner, F. Ahr, A.-L. Calendron, H. Çankaya, S. Carbajo, G. Chang, G. Cirmi, K. Dörner, U. Dorda, A. Fallahi, A. Hartin, M. Hemmer, R. Hobbs, Y. Hua, W.R. Huang, R. Letrun, N. Matlis, V. Mazalova, O.D. Mücke, E. Nanni, W. Putnam, K. Ravi, F. Reichert, I. Sarrou, X. Wu, A. Yahaghi, H. Ye, L. Zapata, D. Zhang, C. Zhou, R.J.D. Miller, K.K. Berggren, H. Graafsma, A. Meents, R.W. Assmann, H.N. Chapman, P. Fromme
Citation: Kärtner, F.X. et al., 2016. AXSIS: Exploring the frontiers in attosecond X-ray science, imaging and spectroscopy. Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, 829, pp.24-29.
Type: Journal-article
Authors: Bahige G. Abdallah, Shatabdi Roy-Chowdhury, Raimund Fromme, Petra Fromme, Alexandra Ros
Citation: Abdallah, B.G. et al., 2016. Protein Crystallization in an Actuated Microfluidic Nanowell Device. Crystal Growth & Design.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Debra T. Hansen, Mark D. Robida, Felicia M. Craciunescu, Andrey V. Loskutov, Katerina Dörner, John-Charles Rodenberry, Xiao Wang, Tien L. Olson, Hetal Patel, Petra Fromme, Kathryn F. Sykes
Citation: Hansen, D.T. et al., 2016. Polyclonal Antibody Production for Membrane Proteins via Genetic Immunization. Scientific Reports, 6, p.21925.
Type: Journal-article
Authors: M. Uddin
Citation: Uddin, M., 2016. Reconstructing three-dimensional helical structure with an X-ray free electron laser. Journal of Applied Crystallography, 49(2), pp.450-456.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Lu Han, Shanteri Singh, Jon S. Thorson, George N. Phillips
Citation: Han, L. et al., 2016. Loop dynamics of thymidine diphosphate-rhamnose 3′-O-methyltransferase (CalS11), an enzyme in calicheamicin biosynthesis. Structural Dynamics, 3(1), p.012004.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Ming-Yue Lee, Nilkanth Patel, Vsevolod Katritch, Raymond C. Stevens, Vadim Cherezov
Citation: Lee, M.-Y. et al., 2016. Structural Studies of the Human Kappa Opioid Receptor Active State Conformations. Biophysical Journal, 110(3), p.38a-39a.
Type: Journal-article
Authors: Premila P. Samuel, William Ou, George N. Phillips, John S. Olson
Citation: Samuel, P.P. et al., 2016. An in Vitro Investigation of Globin Folding and Expression. Biophysical Journal, 110(3), p.209a-210a.
Type: Journal-article
Authors: Andrii Ishchenko, Vadim Cherezov, Wei Liu
Citation: Ishchenko, A., Cherezov, V. & Liu, W., 2016. Preparation and Delivery of Microcrystals in Lipidic Cubic Phase for Serial Femtosecond Crystallography. Biophysical Journal, 110(3), p.59a.
Type: Journal-article
Authors: Joachim Frank, Abbas Ourmazd
Citation: Frank, J. & Ourmazd, A., 2016. Continuous Changes in Structure Mapped by Manifold Embedding of Single-Particle Data in Cryo-EM. Methods.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Kartik Ayyer, Oleksandr M. Yefanov, Dominik Oberthür, Shatabdi Roy-Chowdhury, Lorenzo Galli, Valerio Mariani, Shibom Basu, Jesse Coe, Chelsie E. Conrad, Raimund Fromme, Alexander Schaffer, Katerina Dörner, Daniel James, Christopher Kupitz, Markus Metz, Garrett Nelson, Paulraj Lourdu Xavier, Kenneth R. Beyerlein, Marius Schmidt, Iosifina Sarrou, John C. H. Spence, Uwe Weierstall, Thomas A. White, Jay-How Yang, Yun Zhao, Mengning Liang, Andrew Aquila, Mark S. Hunter, Joseph S. Robinson, Jason E. Koglin, Sébastien Boutet, Petra Fromme, Anton Barty, Henry N. Chapman
Citation: Ayyer, K. et al., 2016. Macromolecular diffractive imaging using imperfect crystals. Nature, 530(7589), pp.202-206.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jie Ding, Robert M. Lawrence, Paul V. Jones, Brenda G. Hogue, Mark A. Hayes
Citation: Ding, J. et al., 2016. Concentration of Sindbis virus with optimized gradient insulator-based dielectrophoresis. Analyst.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Peter Cimermancic, Patrick Weinkam, T. Justin Rettenmaier, Leon Bichmann, Daniel A. Keedy, Rahel A. Woldeyes, Dina Schneidman-Duhovny, Omar N. Demerdash, Julie C. Mitchell, James A. Wells, James S. Fraser, Andrej Sali
Citation: Cimermancic, P. et al., 2016. CryptoSite: Expanding the Druggable Proteome by Characterization and Prediction of Cryptic Binding Sites. Journal of Molecular Biology, 428(4), pp.709-719.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: K. R. Ferguson, M. Bucher, T. Gorkhover, S. Boutet, H. Fukuzawa, J. E. Koglin, Y. Kumagai, A. Lutman, A. Marinelli, M. Messerschmidt, K. Nagaya, J. Turner, K. Ueda, G. J. Williams, P. H. Bucksbaum, C. Bostedt
Citation: Ferguson, K.R. et al., 2016. Transient lattice contraction in the solid-to-plasma transition. Science Advances, 2(1), pp.e1500837-e1500837.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Saša Bajt, Mauro Prasciolu, Andrew J. Morgan, Henry N. Chapman, Jacek Krzywinski, Andrzej Andrejczuk
Citation: Bajt, S. et al., 2016. One dimensional focusing with high numerical aperture multilayer Laue lens.
Type: Proceedings-article
Authors: Richard A. Kirian, Henry N. Chapman
Citation: Kirian, R.A. & Chapman, H.N., 2015. Imaging of Objects by Coherent Diffraction of X-Ray Free-Electron Laser Pulses. Synchrotron Light Sources and Free-Electron Lasers, pp.1-55.
Type: Book-chapter
Authors: Tais Gorkhover, Sebastian Schorb, Ryan Coffee, Marcus Adolph, Lutz Foucar, Daniela Rupp, Andrew Aquila, John D. Bozek, Sascha W. Epp, Benjamin Erk, Lars Gumprecht, Lotte Holmegaard, Andreas Hartmann, Robert Hartmann, Günter Hauser, Peter Holl, Andre Hömke, Per Johnsson, Nils Kimmel, Kai-Uwe Kühnel, Marc Messerschmidt, Christian Reich, Arnaud Rouzée, Benedikt Rudek, Carlo Schmidt, Joachim Schulz, Heike Soltau, Stephan Stern, Georg Weidenspointner, Bill White, Jochen Küpper, Lothar Strüder, Ilme Schlichting, Joachim Ullrich, Daniel Rolles, Artem Rudenko, Thomas Möller, Christoph Bostedt
Citation: Gorkhover, T. et al., 2016. Femtosecond and nanometre visualization of structural dynamics in superheated nanoparticles. Nature Photon, 10(2), pp.93-97.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jesse Coe, Petra Fromme
Citation: Coe, J. & Fromme, P., 2016. Serial femtosecond crystallography opens new avenues for Structural Biology. PPL, 23(3), pp.255-272.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Maria L. Sushko, Dennis G. Thomas, Suzette A. Pabit, Lois Pollack, Alexey V. Onufriev, Nathan A. Baker
Citation: Sushko, M.L. et al., 2016. The Role of Correlation and Solvation in Ion Interactions with B-DNA. Biophysical Journal, 110(2), pp.315-326.
Type: Journal-article
Authors: Arjen J. Jakobi, Daniel M. Passon, Kèvin Knoops, Francesco Stellato, Mengning Liang, Thomas A. White, Thomas Seine, Marc Messerschmidt, Henry N. Chapman, Matthias Wilmanns
Citation: Jakobi, A.J. et al., 2016. In cellulo serial crystallography of alcohol oxidase crystals inside yeast cells . IUCrJ, 3(2).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Irem Altan, Patrick Charbonneau, Edward H. Snell
Citation: Altan, I., Charbonneau, P. & Snell, E.H., 2016. Computational crystallization. Archives of Biochemistry and Biophysics.
Type: Journal-article
Authors: Leonard M. G. Chavas, Sasa Bajt, Lars Gumprecht, Henry N. Chapman
Citation: Chavas, L.M.G. et al., 2015. Serial femtosecond crystallography on in vivo grown crystals at SACLA - developments and results . Acta Cryst Sect A Found Adv, 71(a1), pp.s148-s148.
Type: Journal-article
Authors: Diana C. F. Monteiro, Vijay Patel, Christopher P. Bartlett, Shingo Nozaki, Thomas D. Grant, James A. Gowdy, Gary S. Thompson, Arnout P. Kalverda, Edward H. Snell, Hironori Niki, Arwen R. Pearson, Michael E. Webb
Citation: Monteiro, D.C.F. et al., 2015. Towards a generalised approach for the time-resolved crystallographic study of enzymes. Acta Cryst Sect A Found Adv, 71(a1), pp.s25-s25.
Type: Journal-article
Authors: Joe P. J. Chen, Rick A. Kirian, Richard J. Bean, Kenneth R. Beyerlein, Miriam Barthelmess, Chun Hong Yoon, Fenglin Wang, Flavio Capotondi, Emanuele Pedersoli, Anton Barty, Henry N. Chapman, Philip J. Bones, Romain D. Arnal, Rick P. Millane, John C. H. Spence
Citation: Chen, J.P.J. et al., 2015. Phase retrieval for randomly terminated finite crystals. Acta Cryst Sect A Found Adv, 71(a1), pp.s17-s17.
Type: Journal-article
Authors: Kartik Ayyer, Oleksandr M. Yefanov, Dominik Oberthuer, Shatabdi Chowdhury, Lorenzo Galli, Valerio Mariani, Shibom Basu, Jesse Coe, Chelsie E. Conrad, Raimund Fromme, Katerina Doerner, Matthias Frank, Daniel James, Christopher Kupitz, Markus Metz, Garrett Nelson, Xavier L. Paulraj, Kenneth Beyerlein, Marius Schmidt, Iosifina Sarrou, John C. H. Spence, Uwe Weierstall, Thomas A. White, Jayhow Yang, Nadia A. Zatsepin, Yun Zhao, Mengning Liang, Andrew Aquila, Mark S. Hunter, Joseph S. Robinson, Jason E. Koglin, Sébastien Boutet, Petra Fromme, Anton Barty, Henry N. Chapman
Citation: Ayyer, K. et al., 2015. Improving resolution in serial crystallography. Acta Cryst Sect A Found Adv, 71(a1), pp.s16-s16.
Type: Journal-article
Authors: Thomas R. Schneider, Gleb Bourenkov, Cornelius Gati, Henry N. Chapman, Lars Redecke, Ulrich Zander, José A. Marquez, Florent Cipriani, Thomas R. Schneider
Citation: Schneider, T.R. et al., 2015. Serial synchrotron crystallography experiments at EMBL beamline P14 at PETRA III. Acta Cryst Sect A Found Adv, 71(a1), pp.s12-s12.
Type: Journal-article
Authors: Dianfan Li, Phillip J. Stansfeld, Mark S. P. Sansom, Aaron Keogh, Lutz Vogeley, Nicole Howe, Joseph A. Lyons, David Aragao, Petra Fromme, Raimund Fromme, Shibom Basu, Ingo Grotjohann, Christopher Kupitz, Kimberley Rendek, Uwe Weierstall, Nadia A. Zatsepin, Vadim Cherezov, Wei Liu, Sateesh Bandaru, Niall J. English, Cornelius Gati, Anton Barty, Oleksandr Yefanov, Henry N. Chapman, Kay Diederichs, Marc Messerschmidt, Sébastien Boutet, Garth J. Williams, M. Marvin Seibert, Martin Caffrey
Citation: Li, D. et al., 2015. Ternary structure reveals mechanism of a membrane diacylglycerol kinase. Nat Comms, 6, p.10140.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Julie L. Sutton, Lois Pollack
Citation: Sutton, J.L. & Pollack, L., 2015. Tuning RNA Flexibility with Helix Length and Junction Sequence. Biophysical Journal, 109(12), pp.2644-2653.
Type: Journal-article
Authors: Niko Eckerskorn, Richard Bowman, Richard A. Kirian, Salah Awel, Max Wiedorn, Jochen Küpper, Miles J. Padgett, Henry N. Chapman, Andrei V. Rode
Citation: Eckerskorn, N. et al., 2015. Optically Induced Forces Imposed in an Optical Funnel on a Stream of Particles in Air or Vacuum. Physical Review Applied, 4(6).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Marius Schmidt
Citation: Schmidt, M., 2015. Time-Resolved Crystallography at X-ray Free Electron Lasers and Synchrotron Light Sources. Synchrotron Radiation News, 28(6), pp.25-30.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: K. R. Beyerlein, L. Adriano, M. Heymann, R. Kirian, J. Knoška, F. Wilde, H. N. Chapman, S. Bajt
Citation: Beyerlein, K.R. et al., 2015. Ceramic micro-injection molded nozzles for serial femtosecond crystallography sample delivery. Review of Scientific Instruments, 86(12), p.125104.
Type: Journal-article
Authors: Andrew H Van Benschoten, Lin Liu, Ana Gonzalez, Aaron S Brewster, Nicholas K Sauter, James S Fraser, Michael Wall
Citation: Van Benschoten, A.H. et al., 2015. Measuring and modeling diffuse scattering in protein X-ray crystallography.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Alexander Heifetz, Ewa I. Chudyk, Laura Gleave, Matteo Aldeghi, Vadim Cherezov, Dmitri G. Fedorov, Philip C. Biggin, Mike J. Bodkin
Citation: Heifetz, A. et al., 2016. The Fragment Molecular Orbital Method Reveals New Insight into the Chemical Nature of GPCR-Ligand Interactions. Journal of Chemical Information and Modeling, 56(1), pp.159-172.
Type: Journal-article
Authors: Kate E. Helmich, Jose Henrique Pereira, Daniel L. Gall, Richard A. Heins, Ryan P. McAndrew, Craig Bingman, Kai Deng, Keefe C. Holland, Daniel R. Noguera, Blake A. Simmons, Kenneth L. Sale, John Ralph, Timothy J. Donohue, Paul D. Adams, George N. Phillips
Citation: Helmich, K.E. et al., 2015. Structural Basis of Stereospecificity in the Bacterial Enzymatic Cleavage of β-Aryl Ether Bonds in Lignin. J. Biol. Chem., 291(10), pp.5234-5246.
Type: Journal-article
Authors: Elizabeth L. Baxter, Laura Aguila, Roberto Alonso-Mori, Christopher O. Barnes, Christopher A. Bonagura, Winnie Brehmer, Axel T. Brunger, Guillermo Calero, Tom T. Caradoc-Davies, Ruchira Chatterjee, William F. Degrado, James S. Fraser, Mohamed Ibrahim, Jan Kern, Brian K. Kobilka, Andrew C. Kruse, Karl M. Larsson, Heinrik T. Lemke, Artem Y. Lyubimov, Aashish Manglik, Scott E. McPhillips, Erik Norgren, Siew S. Pang, S. M. Soltis, Jinhu Song, Jessica Thomaston, Yingssu Tsai, William I. Weis, Rahel A. Woldeyes, Vittal Yachandra, Junko Yano, Athina Zouni, Aina E. Cohen
Citation: Baxter, E.L. et al., 2016. High-density grids for efficient data collection from multiple crystals. Acta Crystallogr Sect D Struct Biol, 72(1), pp.2-11.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Raymond G Sierra, Cornelius Gati, Hartawan Laksmono, E Han Dao, Sheraz Gul, Franklin Fuller, Jan Kern, Ruchira Chatterjee, Mohamed Ibrahim, Aaron S Brewster, Iris D Young, Tara Michels-Clark, Andrew Aquila, Mengning Liang, Mark S Hunter, Jason E Koglin, Sébastien Boutet, Elia A Junco, Brandon Hayes, Michael J Bogan, Christina Y Hampton, Elisabetta V Puglisi, Nicholas K Sauter, Claudiu A Stan, Athina Zouni, Junko Yano, Vittal K Yachandra, S Michael Soltis, Joseph D Puglisi, Hasan DeMirci
Citation: Sierra, R.G. et al., 2015. Concentric-flow electrokinetic injector enables serial crystallography of ribosome and photosystem II. Nat Meth.
Type: Journal-article
Authors: Petra Fromme
Citation: Fromme, P., 2015. XFELs open a new era in structural chemical biology. Nat Chem Biol, 11(12), pp.895-899.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Lin Gan, Fernanda Camacho-Alanis, Alexandra Ros
Citation: Gan, L., Camacho-Alanis, F. & Ros, A., 2015. Polarizability of Six-Helix Bundle and Triangle DNA Origami and Their Escape Characteristics from a Dielectrophoretic Trap. Anal. Chem., 87(24), pp.12059-12064.
Type: Journal-article
Authors: Kyle P. Eagen, Tom A. Hartl, Roger D. Kornberg
Citation: Eagen, K.P., Hartl, T.A. & Kornberg, R.D., 2015. Stable Chromosome Condensation Revealed by Chromosome Conformation Capture. Cell, 163(4), pp.934-946.
Type: Journal-article
Authors: Yahli Lorch, Roger D. Kornberg
Citation: Lorch, Y. & Kornberg, R.D., 2015. Chromatin-remodeling and the initiation of transcription. Quarterly Reviews of Biophysics, 48(04), pp.465-470.
Type: Journal-article
Authors: Rebecca L. Miller, Aaron A. Thompson, Claudio Trapella, Remo Guerrini, Davide Malfacini, Nilkanth Patel, Gye Won Han, Vadim Cherezov, Girolamo Caló, Vsevolod Katritch, Raymond C. Stevens
Citation: Miller, R.L. et al., 2015. The Importance of Ligand-Receptor Conformational Pairs in Stabilization: Spotlight on the N/OFQ G Protein-Coupled Receptor. Structure, 23(12), pp.2291-2299.
Type: Journal-article
Authors: Jessica L. Thomaston, Mercedes Alfonso-Prieto, Rahel A. Woldeyes, James S. Fraser, Michael L. Klein, Giacomo Fiorin, William F. DeGrado
Citation: Thomaston, J.L. et al., 2015. High-resolution structures of the M2 channel from influenza A virus reveal dynamic pathways for proton stabilization and transduction. Proc Natl Acad Sci USA, 112(46), pp.14260-14265.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Andrey Bogorodskiy, Fedor Frolov, Alexey Mishin, Ekaterina Round, Vitaly Polovinkin, Vadim Cherezov, Valentin Gordeliy, Georg Büldt, Thomas Gensch, Valentin Borshchevskiy
Citation: Bogorodskiy, A. et al., 2015. Nucleation and Growth of Membrane Protein CrystalsIn Meso--A Fluorescence Microscopy Study. Crystal Growth & Design, 15(12), pp.5656-5660.
Type: Journal-article
Authors: Jeffrey D. Rudolf, Lance Bigelow, Changsoo Chang, Marianne E. Cuff, Jeremy R. Lohman, Chin-Yuan Chang, Ming Ma, Dong Yang, Shonda Clancy, Gyorgy Babnigg, Andrzej Joachimiak, George N. Phillips, Ben Shen
Citation: Rudolf, J.D. et al., 2015. Crystal Structure of the Zorbamycin-Binding Protein ZbmA, the Primary Self-Resistance Element in Streptomyces flavoviridis ATCC21892 . Biochemistry, 54(45), pp.6842-6851.
Type: Journal-article
Authors: Daniel A. Keedy, James S. Fraser, Henry van den Bedem
Citation: Keedy, D.A., Fraser, J.S. & van den Bedem, H., 2015. Exposing Hidden Alternative Backbone Conformations in X-ray Crystallography Using qFit A. Shehu, ed. PLoS Comput Biol, 11(10), p.e1004507.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Oleksandr Yefanov, Valerio Mariani, Cornelius Gati, Thomas A. White, Henry N. Chapman, Anton Barty
Citation: Yefanov, O. et al., 2015. Accurate determination of segmented X-ray detector geometry. Optics Express, 23(22), p.28459.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Kenji Murakami, Kuang-Lei Tsai, Nir Kalisman, David A. Bushnell, Francisco J. Asturias, Roger D. Kornberg
Citation: Murakami, K. et al., 2015. Structure of an RNA polymerase II preinitiation complex. Proceedings of the National Academy of Sciences, 112(44), pp.13543-13548.
Type: Journal-article
Authors: Richard A. Kirian, Henry N. Chapman
Citation: Kirian, R.A. & Chapman, H.N., 2015. Imaging of Objects by Coherent Diffraction of X-Ray FEL Pulses. Synchrotron Light Sources and Free-Electron Lasers, pp.1-55.
Type: Book-chapter
Authors: Daniel A Keedy, Lillian R Kenner, Matthew Warkentin, Rahel A Woldeyes, Jesse B Hopkins, Michael C Thompson, Aaron S Brewster, Andrew H Van Benschoten, Elizabeth L Baxter, Monarin Uervirojnangkoorn, Scott E McPhillips, Jinhu Song, Roberto Alonso-Mori, James M Holton, William I Weis, Axel T Brunger, S Michael Soltis, Henrik Lemke, Ana Gonzalez, Nicholas K Sauter, Aina E Cohen, Henry van den Bedem, Robert E Thorne, James S Fraser
Citation: Keedy, D.A. et al., 2015. Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography. eLife, 4.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jeremy R. Lohman, Ming Ma, Jerzy Osipiuk, Boguslaw Nocek, Youngchang Kim, Changsoo Chang, Marianne Cuff, Jamey Mack, Lance Bigelow, Hui Li, Michael Endres, Gyorgy Babnigg, Andrzej Joachimiak, George N. Phillips, Ben Shen
Citation: Lohman, J.R. et al., 2015. Structural and evolutionary relationships of "AT-less" type I polyketide synthase ketosynthases. Proceedings of the National Academy of Sciences, 112(41), pp.12693-12698.
Type: Journal-article
Authors: Haitao Zhang, Hamiyet Unal, Russell Desnoyer, Gye Won Han, Nilkanth Patel, Vsevolod Katritch, Sadashiva S. Karnik, Vadim Cherezov, Raymond C. Stevens
Citation: Zhang, H. et al., 2015. Structural Basis for Ligand Recognition and Functional Selectivity at Angiotensin Receptor. J. Biol. Chem., 290(49), pp.29127-29139.
Type: Journal-article
Authors: Lorenzo Galli, Sang-Kil Son, Thomas R. M. Barends, Thomas A. White, Anton Barty, Sabine Botha, Sébastien Boutet, Carl Caleman, R. Bruce Doak, Max H. Nanao, Karol Nass, Robert L. Shoeman, Nicusor Timneanu, Robin Santra, Ilme Schlichting, Henry N. Chapman
Citation: Galli, L. et al., 2015. Towards phasing using high X-ray intensity. IUCrJ, 2(6), pp.627-634.
Type: Journal-article
Authors: Philip J Robinson, Michael J Trnka, Riccardo Pellarin, Charles H Greenberg, David A Bushnell, Ralph Davis, Alma L Burlingame, Andrej Sali, Roger D Kornberg
Citation: Robinson, P.J. et al., 2015. Molecular architecture of the yeast Mediator complex. eLife, 4.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: J C H Spence, G Subramanian, P Musumeci
Citation: Spence, J.C.H., Subramanian, G. & Musumeci, P., 2015. Hollow cone illumination for fast TEM, and outrunning damage with electrons. Journal of Physics B: Atomic, Molecular and Optical Physics, 48(21), p.214003.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Joe P. J. Chen, Richard A. Kirian, Kenneth R. Beyerlein, Richard J. Bean, Andrew J. Morgan, Oleksandr M. Yefanov, Romain D. Arnal, David H. Wojtas, Phil J. Bones, Henry N. Chapman, John C. H. Spence, Rick P. Millane
Citation: Chen, J.P.J. et al., 2015. Image reconstruction in serial femtosecond nanocrystallography using x-ray free-electron lasers Philip J. Bones, M. A. Fiddy, & R. P. Millane, eds. Image Reconstruction from Incomplete Data VIII.
Type: Proceedings-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Thomas Kierspel, Joss Wiese, Terry Mullins, Joseph Robinson, Andy Aquila, Anton Barty, Richard Bean, Rebecca Boll, Sébastien Boutet, Philip Bucksbaum, Henry N Chapman, Lauge Christensen, Alan Fry, Mark Hunter, Jason E Koglin, Mengning Liang, Valerio Mariani, Andrew Morgan, Adi Natan, Vladimir Petrovic, Daniel Rolles, Artem Rudenko, Kirsten Schnorr, Henrik Stapelfeldt, Stephan Stern, Jan Thøgersen, Chun Hong Yoon, Fenglin Wang, Sebastian Trippel, Jochen Küpper
Citation: Kierspel, T. et al., 2015. Strongly aligned gas-phase molecules at free-electron lasers. Journal of Physics B: Atomic, Molecular and Optical Physics, 48(20), p.204002.
Type: Journal-article
Authors: W. Wierzchowski, K. Wieteska, R. Sobierajski, D. Klinger, J. Pełka, D. Żymierska, C. Paulmann, S.P. Hau-Riege, R.A. London, A. Graf, T. Burian, J. Chalupský, J. Gaudin, J. Krzywinski, S. Moeller, M. Messerschmidt, J. Bozek, Ch. Bostedt
Citation: Wierzchowski, W. et al., 2015. Synchrotron topographic evaluation of strain around craters generated by irradiation with X-ray pulses from free electron laser with different intensities. Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, 364, pp.20-26.
Type: Journal-article
Authors: Jose A. Rodriguez, Magdalena I. Ivanova, Michael R. Sawaya, Duilio Cascio, Francis E. Reyes, Dan Shi, Smriti Sangwan, Elizabeth L. Guenther, Lisa M. Johnson, Meng Zhang, Lin Jiang, Mark A. Arbing, Brent L. Nannenga, Johan Hattne, Julian Whitelegge, Aaron S. Brewster, Marc Messerschmidt, Sébastien Boutet, Nicholas K. Sauter, Tamir Gonen, David S. Eisenberg
Citation: Rodriguez, J.A. et al., 2015. Structure of the toxic core of α-synuclein from invisible crystals. Nature, 525(7570), pp.486-490.
Type: Journal-article
Authors: J Hoszowska, J Szlachetko, J-Cl Dousse, W Błachucki, Y Kayser, Ch Milne, M Pajek, S Boutet, M Messerschmidt, G Williams, C T Chantler
Citation: Hoszowska, J. et al., 2015. X-ray two-photon absorption with high fluence XFEL pulses. Journal of Physics: Conference Series, 635(10), p.102009.
Type: Journal-article
Authors: Furqan M. Fazal, Cong A. Meng, Kenji Murakami, Roger D. Kornberg, Steven M. Block
Citation: Fazal, F.M. et al., 2015. Real-time observation of the initiation of RNA polymerase II transcription. Nature, 525(7568), pp.274-277.
Type: Journal-article
Authors: Matthias Fuchs, Mariano Trigo, Jian Chen, Shambhu Ghimire, Sharon Shwartz, Michael Kozina, Mason Jiang, Thomas Henighan, Crystal Bray, Georges Ndabashimiye, Philip H. Bucksbaum, Yiping Feng, Sven Herrmann, Gabriella A. Carini, Jack Pines, Philip Hart, Christopher Kenney, Serge Guillet, Sébastien Boutet, Garth J. Williams, Marc Messerschmidt, M. Marvin Seibert, Stefan Moeller, Jerome B. Hastings, David A. Reis
Citation: Fuchs, M. et al., 2015. Anomalous nonlinear X-ray Compton scattering. Nature Physics, 11(11), pp.964-970.
Type: Journal-article
Authors: David Mavor, James Fraser,
Citation: Mavor, D. & Fraser, J., 2015. Determination of Ubiquitin Fitness Landscapes Under Different Chemical Stresses in a Classroom Setting.
Type: Posted-content
Authors: Niko Eckerskorn, Richard Bowman, Richard A. Kirian, Salah Awel, Max Wiedorn, Jochen Küpper, Miles J. Padgett, Henry N. Chapman, Andrei V. Rode
Citation: Eckerskorn, N. et al., 2015. Toward steering a jet of particles into an x-ray beam with optically induced forces K. Dholakia & G. C. Spalding, eds. Optical Trapping and Optical Micromanipulation XII.
Type: Proceedings-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Zhen Gong, Jose M. Martin-Garcia, Sasha M. Daskalova, Felicia M. Craciunescu, Lusheng Song, Katerina Dörner, Debra T. Hansen, Jay-How Yang, Joshua LaBaer, Brenda G. Hogue, Tsafrir S. Mor, Petra Fromme
Citation: Gong, Z. et al., 2015. Biophysical Characterization of a Vaccine Candidate against HIV-1: The Transmembrane and Membrane Proximal Domains of HIV-1 gp41 as a Maltose Binding Protein Fusion A. Kumar, ed. PLoS ONE, 10(8), p.e0136507.
Type: Journal-article
Authors: Robert M. Lawrence, Chelsie E. Conrad, Nadia A. Zatsepin, Thomas D. Grant, Haiguang Liu, Daniel James, Garrett Nelson, Ganesh Subramanian, Andrew Aquila, Mark S. Hunter, Mengning Liang, Sébastien Boutet, Jesse Coe, John C. H. Spence, Uwe Weierstall, Wei Liu, Petra Fromme, Vadim Cherezov, Brenda G. Hogue
Citation: Lawrence, R.M. et al., 2015. Serial femtosecond X-ray diffraction of enveloped virus microcrystals. Structural Dynamics, 2(4), p.041720.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Bahige G. Abdallah, Nadia A. Zatsepin, Shatabdi Roy-Chowdhury, Jesse Coe, Chelsie E. Conrad, Katerina Dörner, Raymond G. Sierra, Hilary P. Stevenson, Fernanda Camacho-Alanis, Thomas D. Grant, Garrett Nelson, Daniel James, Guillermo Calero, Rebekka M. Wachter, John C. H. Spence, Uwe Weierstall, Petra Fromme, Alexandra Ros
Citation: Abdallah, B.G. et al., 2015. Microfluidic sorting of protein nanocrystals by size for X-ray free-electron laser diffraction. Structural Dynamics, 2(4), p.041719.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Abbas Ourmazd
Citation: Ourmazd, A., 2015. Preface for Special Issue on Biology with X-ray Lasers 2. Structural Dynamics, 2(4), p.041501.
Type: Journal-article
Authors: Benjamin A Barad, Nathaniel Echols, Ray Yu-Ruei Wang, Yifan Cheng, Frank DiMaio, Paul D Adams, James S Fraser
Citation: Barad, B.A. et al., 2015. EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy. Nat Meth, 12(10), pp.943-946.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Raimund Fromme, Andrii Ishchenko, Markus Metz, Shatabdi Roy Chowdhury, Shibom Basu, Sébastien Boutet, Petra Fromme, Thomas A. White, Anton Barty, John C. H. Spence, Uwe Weierstall, Wei Liu, Vadim Cherezov
Citation: Fromme, R. et al., 2015. Serial femtosecond crystallography of soluble proteins in lipidic cubic phase. IUCrJ, 2(5), pp.545-551.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Shanteri Singh, Karolina Michalska, Lance Bigelow, Michael Endres, Madan K. Kharel, Gyorgy Babnigg, Ragothaman M. Yennamalli, Craig A. Bingman, Andrzej Joachimiak, Jon S. Thorson, George N. Phillips
Citation: Singh, S. et al., 2015. Structural Characterization of CalS8, a TDP-α-d-Glucose Dehydrogenase Involved in Calicheamicin Aminodideoxypentose Biosynthesis. J. Biol. Chem., 290(43), pp.26249-26258.
Type: Journal-article
Authors: Andrew H. Van Benschoten, Pavel V. Afonine, Thomas C. Terwilliger, Michael E. Wall, Colin J. Jackson, Nicholas K. Sauter, Paul D. Adams, Alexandre Urzhumtsev, James S. Fraser
Citation: Van Benschoten, A.H. et al., 2015. Predicting X-ray diffuse scattering from translation-libration-screw structural ensembles. Acta Crystallogr D, 71(8), pp.1657-1667.
Type: Journal-article
Authors: Alexandre Urzhumtsev, Pavel V. Afonine, Andrew H. Van Benschoten, James S. Fraser, Paul D. Adams
Citation: Urzhumtsev, A. et al., 2015. From deep TLS validation to ensembles of atomic models built from elemental motions. Acta Crystallogr D, 71(8), pp.1668-1683.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Premila P. Samuel, Lucian P. Smith, George N. Phillips, John S. Olson
Citation: Samuel, P.P. et al., 2015. Apoglobin Stability Is the Major Factor Governing both Cell-free andin VivoExpression of Holomyoglobin. Journal of Biological Chemistry, 290(39), pp.23479-23495.
Type: Journal-article
Authors: Yanyong Kang, X. Edward Zhou, Xiang Gao, Yuanzheng He, Wei Liu, Andrii Ishchenko, Anton Barty, Thomas A. White, Oleksandr Yefanov, Gye Won Han, Qingping Xu, Parker W. de Waal, Jiyuan Ke, M. H. Eileen Tan, Chenghai Zhang, Arne Moeller, Graham M. West, Bruce D. Pascal, Ned Van Eps, Lydia N. Caro, Sergey A. Vishnivetskiy, Regina J. Lee, Kelly M. Suino-Powell, Xin Gu, Kuntal Pal, Jinming Ma, Xiaoyong Zhi, Sébastien Boutet, Garth J. Williams, Marc Messerschmidt, Cornelius Gati, Nadia A. Zatsepin, Dingjie Wang, Daniel James, Shibom Basu, Shatabdi Roy-Chowdhury, Chelsie E. Conrad, Jesse Coe, Haiguang Liu, Stella Lisova, Christopher Kupitz, Ingo Grotjohann, Raimund Fromme, Yi Jiang, Minjia Tan, Huaiyu Yang, Jun Li, Meitian Wang, Zhong Zheng, Dianfan Li, Nicole Howe, Yingming Zhao, Jörg Standfuss, Kay Diederichs, Yuhui Dong, Clinton S. Potter, Bridget Carragher, Martin Caffrey, Hualiang Jiang, Henry N. Chapman, John C. H. Spence, Petra Fromme, Uwe Weierstall, Oliver P. Ernst, Vsevolod Katritch, Vsevolod V. Gurevich, Patrick R. Griffin, Wayne L. Hubbell, Raymond C. Stevens, Vadim Cherezov, Karsten Melcher, H. Eric Xu
Citation: Kang, Y. et al., 2015. Crystal structure of rhodopsin bound to arrestin by femtosecond X-ray laser. Nature, 523(7562), pp.561-567.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: S. Goyal, M. Jäger, P.N. Robinson, V. Vanita
Citation: Goyal, S. et al., 2015. Confirmation of TTC8 as a disease gene for nonsyndromic autosomal recessive retinitis pigmentosa (RP51) . Clinical Genetics, 89(4), pp.454-460.
Type: Journal-article
Authors: Marcus Fischer, Brian K. Shoichet, James S. Fraser
Citation: Fischer, M., Shoichet, B.K. & Fraser, J.S., 2015. Inside Cover: One Crystal, Two Temperatures: Cryocooling Penalties Alter Ligand Binding to Transient Protein Sites (ChemBioChem 11/2015). ChemBioChem, 16(11), pp.1526-1526.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: J. Chalupský, P. Boháček, T. Burian, V. Hájková, S. P. Hau-Riege, P. A. Heimann, L. Juha, M. Messerschmidt, S. P. Moeller, B. Nagler, M. Rowen, W. F. Schlotter, M. L. Swiggers, J. J. Turner, J. Krzywinski
Citation: Chalupský, J. et al., 2015. Imprinting a Focused X-Ray Laser Beam to Measure Its Full Spatial Characteristics. Physical Review Applied, 4(1).
Type: Journal-article
Authors: Hartawan Laksmono, Trevor A. McQueen, Jonas A. Sellberg, N. Duane Loh, Congcong Huang, Daniel Schlesinger, Raymond G. Sierra, Christina Y. Hampton, Dennis Nordlund, Martin Beye, Andrew V. Martin, Anton Barty, M. Marvin Seibert, Marc Messerschmidt, Garth J. Williams, Sébastien Boutet, Katrin Amann-Winkel, Thomas Loerting, Lars G. M. Pettersson, Michael J. Bogan, Anders Nilsson
Citation: Laksmono, H. et al., 2015. Anomalous Behavior of the Homogeneous Ice Nucleation Rate in "No-Man's Land." The Journal of Physical Chemistry Letters, 6(14), pp.2826-2832.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: M Mucke, V Zhaunerchyk, L J Frasinski, R J Squibb, M Siano, J H D Eland, P Linusson, P Salén, P v d Meulen, R D Thomas, M Larsson, L Foucar, J Ullrich, K Motomura, S Mondal, K Ueda, T Osipov, L Fang, B F Murphy, N Berrah, C Bostedt, J D Bozek, S Schorb, M Messerschmidt, J M Glownia, J P Cryan, R N Coffee, O Takahashi, S Wada, M N Piancastelli, R Richter, K C Prince, R Feifel
Citation: Mucke, M. et al., 2015. Covariance mapping of two-photon double core hole states in C2H2and C2H6produced by an x-ray free electron laser. New J. Phys., 17(7), p.073002.
Type: Journal-article
Authors: Johan Hattne, Nathaniel Echols, Rosalie Tran, Jan Kern, Richard J Gildea, Aaron S Brewster, Roberto Alonso-Mori, Carina Glöckner, Julia Hellmich, Hartawan Laksmono, Raymond G Sierra, Benedikt Lassalle-Kaiser, Alyssa Lampe, Guangye Han, Sheraz Gul, Dörte DiFiore, Despina Milathianaki, Alan R Fry, Alan Miahnahri, William E White, Donald W Schafer, M Marvin Seibert, Jason E Koglin, Dimosthenis Sokaras, Tsu-Chien Weng, Jonas Sellberg, Matthew J Latimer, Pieter Glatzel, Petrus H Zwart, Ralf W Grosse-Kunstleve, Michael J Bogan, Marc Messerschmidt, Garth J Williams, Sébastien Boutet, Johannes Messinger, Athina Zouni, Junko Yano, Uwe Bergmann, Vittal K Yachandra, Paul D Adams, Nicholas K Sauter
Citation: Hattne, J. et al., 2015. Corrigendum: Accurate macromolecular structures using minimal measurements from X-ray free-electron lasers. Nat Meth, 12(7), pp.692-692.
Type: Journal-article
Authors: Valérie Panneels, Wenting Wu, Ching-Ju Tsai, Przemek Nogly, Jan Rheinberger, Kathrin Jaeger, Gregor Cicchetti, Cornelius Gati, Leonhard M. Kick, Leonardo Sala, Guido Capitani, Chris Milne, Celestino Padeste, Bill Pedrini, Xiao-Dan Li, Jörg Standfuss, Rafael Abela, Gebhard Schertler
Citation: Panneels, V. et al., 2015. Time-resolved structural studies with serial crystallography: A new light on retinal proteins. Structural Dynamics, 2(4), p.041718.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Chelsie E. Conrad, Shibom Basu, Daniel James, Dingjie Wang, Alexander Schaffer, Shatabdi Roy-Chowdhury, Nadia A. Zatsepin, Andrew Aquila, Jesse Coe, Cornelius Gati, Mark S. Hunter, Jason E. Koglin, Christopher Kupitz, Garrett Nelson, Ganesh Subramanian, Thomas A. White, Yun Zhao, James Zook, Sébastien Boutet, Vadim Cherezov, John C. H. Spence, Raimund Fromme, Uwe Weierstall, Petra Fromme
Citation: Conrad, C.E. et al., 2015. A novel inert crystal delivery medium for serial femtosecond crystallography. IUCrJ, 2(4), pp.421-430.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Ashtamurthy S. Pawate, Vukica Šrajer, Jeremy Schieferstein, Sudipto Guha, Robert Henning, Irina Kosheleva, Marius Schmidt, Zhong Ren, Paul J. A. Kenis, Sarah L. Perry
Citation: Pawate, A.S. et al., 2015. Towards time-resolved serial crystallography in a microfluidic device. Acta Crystallogr Sect F Struct Biol Cryst Commun, 71(7), pp.823-830.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Wenting Wu, Przemyslaw Nogly, Jan Rheinberger, Leonhard M. Kick, Cornelius Gati, Garrett Nelson, Xavier Deupi, Jörg Standfuss, Gebhard Schertler, Valérie Panneels
Citation: Wu, W. et al., 2015. Batch crystallization of rhodopsin for structural dynamics using an X-ray free-electron laser. Acta Crystallogr Sect F Struct Biol Cryst Commun, 71(7), pp.856-860.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Geoffrey K. Feld, Michael Heymann, W. Henry Benner, Tommaso Pardini, Ching-Ju Tsai, Sébastien Boutet, Matthew A. Coleman, Mark S. Hunter, Xiaodan Li, Marc Messerschmidt, Achini Opathalage, Bill Pedrini, Garth J. Williams, Bryan A. Krantz, Seth Fraden, Stefan Hau-Riege, James E. Evans, Brent W. Segelke, Matthias Frank
Citation: Feld, G.K. et al., 2015. Low- Z polymer sample supports for fixed-target serial femtosecond X-ray crystallography . J Appl Crystallogr, 48(4), pp.1072-1079.
Type: Journal-article
Authors: JR Lohman, A Joachimiak, GN Phillips Jr, B Shen
Citation: Lohman, J. et al., 2015. Structural and evolutionary relationships of ketosynthase domains from modular polyketide synthases. Planta Medica, 81(11).
Type: Journal-article
Authors: R. A. Kirian, S. Awel, N. Eckerskorn, H. Fleckenstein, M. Wiedorn, L. Adriano, S. Bajt, M. Barthelmess, R. Bean, K. R. Beyerlein, L. M. G. Chavas, M. Domaracky, M. Heymann, D. A. Horke, J. Knoska, M. Metz, A. Morgan, D. Oberthuer, N. Roth, T. Sato, P. L. Xavier, O. Yefanov, A. V. Rode, J. Küpper, H. N. Chapman
Citation: Kirian, R.A. et al., 2015. Simple convergent-nozzle aerosol injector for single-particle diffractive imaging with X-ray free-electron lasers. Structural Dynamics, 2(4), p.041717.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jing Yang, Antonella Cusimano, Jappmann K. Monga, Morgan E. Preziosi, Filippo Pullara, Guillermo Calero, Richard Lang, Terry P. Yamaguchi, Kari N. Nejak-Bowen, Satdarshan P. Monga
Citation: Yang, J. et al., 2015. WNT5A Inhibits Hepatocyte Proliferation and Concludes β-Catenin Signaling in Liver Regeneration. The American Journal of Pathology, 185(8), pp.2194-2205.
Type: Journal-article
Authors: H. C. Poon, D. K. Saldin
Citation: Poon, H.C. & Saldin, D.K., 2015. Use of triple correlations for the sign determinations of expansion coefficients of symmetric approximations to the diffraction volumes of regular viruses. Structural Dynamics, 2(4), p.041716.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Steve P. Meisburger, Suzette A. Pabit, Lois Pollack
Citation: Meisburger, S.P., Pabit, S.A. & Pollack, L., 2015. Determining the Locations of Ions and Water around DNA from X-Ray Scattering Measurements. Biophysical Journal, 108(12), pp.2886-2895.
Type: Journal-article
Authors: Kenji Murakami, Pierre-Jean Mattei, Ralph E. Davis, Huiyan Jin, Craig D. Kaplan, Roger D. Kornberg
Citation: Murakami, K. et al., 2015. Uncoupling Promoter Opening from Start-Site Scanning. Molecular Cell, 59(1), pp.133-138.
Type: Journal-article
Authors: Chufeng Li, Kevin Schmidt, John C. Spence
Citation: Li, C., Schmidt, K. & Spence, J.C., 2015. Data collection strategies for time-resolved X-ray free-electron laser diffraction, and 2-color methods. Structural Dynamics, 2(4), p.041714.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Maike Bublitz, Karol Nass, Nikolaj D. Drachmann, Anders J. Markvardsen, Matthias J. Gutmann, Thomas R. M. Barends, Daniel Mattle, Robert L. Shoeman, R. Bruce Doak, Sébastien Boutet, Marc Messerschmidt, Marvin M. Seibert, Garth J. Williams, Lutz Foucar, Linda Reinhard, Oleg Sitsel, Jonas L. Gregersen, Johannes D. Clausen, Thomas Boesen, Kamil Gotfryd, Kai-Tuo Wang, Claus Olesen, Jesper V. Møller, Poul Nissen, Ilme Schlichting
Citation: Bublitz, M. et al., 2015. Structural studies of P-type ATPase-ligand complexes using an X-ray free-electron laser. IUCrJ, 2(4), pp.409-420.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Shanteri Singh, Youngchang Kim, Fengbin Wang, Lance Bigelow, Michael Endres, Madan K. Kharel, Gyorgy Babnigg, Craig A. Bingman, Andrzej Joachimiak, Jon S. Thorson, George N. Phillips
Citation: Singh, S. et al., 2015. Structural characterization of AtmS13, a putative sugar aminotransferase involved in indolocarbazole AT2433 aminopentose biosynthesis. Proteins: Structure, Function, and Bioinformatics, 83(8), pp.1547-1554.
Type: Journal-article
Authors: Ying Wu, Leonardus M. I. Koharudin, Jennifer Mehrens, Maria DeLucia, Chang-Hyeok Byeon, In-Ja L. Byeon, Guillermo Calero, Jinwoo Ahn, Angela M. Gronenborn
Citation: Wu, Y. et al., 2015. Structural Basis of Clade-specific Engagement of SAMHD1 (Sterile α Motif and Histidine/Aspartate-containing Protein 1) Restriction Factors by Lentiviral Viral Protein X (Vpx) Virulence Factors. Journal of Biological Chemistry, 290(29), pp.17935-17945.
Type: Journal-article
Authors: Jesse N. Clark, Loren Beitra, Gang Xiong, David M. Fritz, Henrik T. Lemke, Diling Zhu, Matthieu Chollet, Garth J. Williams, Marc M. Messerschmidt, Brian Abbey, Ross J. Harder, Alexander M. Korsunsky, Justin S. Wark, David A. Reis, Ian K. Robinson
Citation: Clark, J.N. et al., 2015. Imaging transient melting of a nanocrystal using an X-ray laser. Proc Natl Acad Sci USA, 112(24), pp.7444-7448.
Type: Journal-article
Authors: Mauro Prasciolu, Anton Haase, Frank Scholze, Henry N. Chapman, Saša Bajt
Citation: Prasciolu, M. et al., 2015. Extended asymmetric-cut multilayer X-ray gratings. Optics Express, 23(12), p.15195.
Type: Journal-article
Authors: Andrew J. Morgan, Mauro Prasciolu, Andrzej Andrejczuk, Jacek Krzywinski, Alke Meents, David Pennicard, Heinz Graafsma, Anton Barty, Richard J. Bean, Miriam Barthelmess, Dominik Oberthuer, Oleksandr Yefanov, Andrew Aquila, Henry N. Chapman, Saša Bajt
Citation: Morgan, A.J. et al., 2015. High numerical aperture multilayer Laue lenses. Scientific Reports, 5(1).
Type: Journal-article
Authors: Fengbin Wang, Shanteri Singh, Weijun Xu, Kate E. Helmich, Mitchell D. Miller, Hongnan Cao, Craig A. Bingman, Jon S. Thorson, George N. Phillips
Citation: Wang, F. et al., 2015. Structural Basis for the Stereochemical Control of Amine Installation in Nucleotide Sugar Aminotransferases. ACS Chemical Biology, 10(9), pp.2048-2056.
Type: Journal-article
Authors: Marcus Fischer, Brian K. Shoichet, James S. Fraser
Citation: Fischer, M., Shoichet, B.K. & Fraser, J.S., 2015. One Crystal, Two Temperatures: Cryocooling Penalties Alter Ligand Binding to Transient Protein Sites. ChemBioChem, 16(11), pp.1560-1564.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Eynat Dellus-Gur, Mikael Elias, Emilia Caselli, Fabio Prati, Merijn L.M. Salverda, J. Arjan G.M. de Visser, James S. Fraser, Dan S. Tawfik
Citation: Dellus-Gur, E. et al., 2015. Negative Epistasis and Evolvability in TEM-1 β-Lactamase--The Thin Line between an Enzyme's Conformational Freedom and Disorder. Journal of Molecular Biology, 427(14), pp.2396-2409.
Type: Journal-article
Authors: James Zook, Gina Mo, Nicholas J. Sisco, Felicia M. Craciunescu, Debra T. Hansen, Bobby Baravati, Brian R. Cherry, Kathryn Sykes, Rebekka Wachter, Wade D. Van Horn, Petra Fromme
Citation: Zook, J. et al., 2015. NMR Structure of Francisella tularensis Virulence Determinant Reveals Structural Homology to Bet v1 Allergen Proteins. Structure, 23(6), pp.1116-1122.
Type: Journal-article
Authors: Joseph R. Luft, Jennifer R. Wolfley, Eleanor Cook Franks, Angela M. Lauricella, Ellen J. Gualtieri, Edward H. Snell, Rong Xiao, John K. Everett, Gaetano T. Montelione
Citation: Luft, J.R. et al., 2015. The detection and subsequent volume optimization of biological nanocrystals. Structural Dynamics, 2(4), p.041710.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Joshua R. Kane, David J. Stanley, Judd F. Hultquist, Jeffrey R. Johnson, Nicole Mietrach, Jennifer M. Binning, Stefán R. Jónsson, Sarah Barelier, Billy W. Newton, Tasha L. Johnson, Kathleen E. Franks-Skiba, Ming Li, William L. Brown, Hörður I. Gunnarsson, Adalbjorg Adalbjornsdóttir, James S. Fraser, Reuben S. Harris, Valgerður Andrésdóttir, John D. Gross, Nevan J. Krogan
Citation: Kane, J.R. et al., 2015. Lineage-Specific Viral Hijacking of Non-canonical E3 Ubiquitin Ligase Cofactors in the Evolution of Vif Anti-APOBEC3 Activity. Cell Reports, 11(8), pp.1236-1250.
Type: Journal-article
Authors: L. M. G. Chavas, L. Gumprecht, H. N. Chapman
Citation: Chavas, L.M.G., Gumprecht, L. & Chapman, H.N., 2015. Possibilities for serial femtosecond crystallography sample delivery at future light sourcesa). Structural Dynamics, 2(4), p.041709.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jay-How Yang, Iosifina Sarrou, Jose M. Martin-Garcia, Shangji Zhang, Kevin E. Redding, Petra Fromme
Citation: Yang, J.-H. et al., 2015. Purification and biochemical characterization of the ATP synthase from Heliobacterium modesticaldum. Protein Expression and Purification, 114, pp.1-8.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Marius Schmidt, Kanupriya Pande, Shibom Basu, Jason Tenboer
Citation: Schmidt, M. et al., 2015. Room temperature structures beyond 1.5 ... by serial femtosecond crystallography. Structural Dynamics, 2(4), p.041708.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Wolfram Helml, Andreas R. Maier, Wolfgang Schweinberger, Ivanka Grguras, Paul Radcliffe, Gilles Doumy, Chris Roedig, Justin Gagnon, Marc Messerschmidt, Sebastian Schorb, Christoph Bostedt, Florian Grüner, Louis F. DiMauro, Denis Cubaynes, John D. Bozek, Thomas Tschentscher, John T. Costello, Michael Meyer, Ryan Coffee, Stefan Düsterer, Adrian L. Cavalieri, Reinhard Kienberger
Citation: Helml, W. et al., 2015. Sub-Femtosecond Free-Electron Laser Pulses. CLEO: 2015.
Type: Proceedings-article
Authors: Daniel A Keedy, James Fraser, Henry van den Bedem
Citation: Keedy, D.A., Fraser, J. & van den Bedem, H., 2015. Exposing hidden alternative backbone conformations in X-ray crystallography using qFit.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: A. Hosseinizadeh, A. Dashti, P. Schwander, R. Fung, A. Ourmazd
Citation: Hosseinizadeh, A. et al., 2015. Single-particle structure determination by X-ray free-electron lasers: Possibilities and challenges. Structural Dynamics, 2(4), p.041601.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: L. Galli, S.-K. Son, M. Klinge, S. Bajt, A. Barty, R. Bean, C. Betzel, K. R. Beyerlein, C. Caleman, R. B. Doak, M. Duszenko, H. Fleckenstein, C. Gati, B. Hunt, R. A. Kirian, M. Liang, M. H. Nanao, K. Nass, D. Oberthür, L. Redecke, R. Shoeman, F. Stellato, C. H. Yoon, T. A. White, O. Yefanov, J. Spence, H. N. Chapman
Citation: Galli, L. et al., 2015. Electronic damage in S atoms in a native protein crystal induced by an intense X-ray free-electron laser pulse. Structural Dynamics, 2(4), p.041703.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Do Jin Kim, Eduard Bitto, Craig A. Bingman, Hyun-Jung Kim, Byung Woo Han, George N. Phillips
Citation: Kim, D.J. et al., 2015. Crystal structure of the protein At3g01520, a eukaryotic universal stress protein-like protein from arabidopsis thaliana in complex with AMP . Proteins: Structure, Function, and Bioinformatics, 83(7), pp.1368-1373.
Type: Journal-article
Authors: Haitao Zhang, Hamiyet Unal, Cornelius Gati, Gye Won Han, Wei Liu, Nadia A. Zatsepin, Daniel James, Dingjie Wang, Garrett Nelson, Uwe Weierstall, Michael R. Sawaya, Qingping Xu, Marc Messerschmidt, Garth J. Williams, Sébastien Boutet, Oleksandr M. Yefanov, Thomas A. White, Chong Wang, Andrii Ishchenko, Kalyan C. Tirupula, Russell Desnoyer, Jesse Coe, Chelsie E. Conrad, Petra Fromme, Raymond C. Stevens, Vsevolod Katritch, Sadashiva S. Karnik, Vadim Cherezov
Citation: Zhang, H. et al., 2015. Structure of the Angiotensin Receptor Revealed by Serial Femtosecond Crystallography. Cell, 161(4), pp.833-844.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Thomas Charles Terwilliger, Li-Wei Hung, Paul D. Adams, Nathanial D Echols, Ralf Grosse-Kunstleve, James Holton, Gabor Bunkoczi, Randy J. Read, David Akey, Janet Smith
Citation: Terwilliger, T.C. et al., 2015. Structure determination with weak anomalous signal.
Type: Report
Authors: Michele E. Auldridge, Hongnan Cao, Saurabh Sen, Laura P. Franz, Craig A. Bingman, Ragothaman M. Yennamalli, George N. Phillips, David Mead, Eric J. Steinmetz
Citation: Auldridge, M.E. et al., 2015. LucY: A Versatile New Fluorescent Reporter Protein S. W. Michnick, ed. PLoS ONE, 10(4), p.e0124272.
Type: Journal-article
Authors: Diana C.F. Monteiro, Vijay Patel, Christopher P. Bartlett, Shingo Nozaki, Thomas D. Grant, James A. Gowdy, Gary S. Thompson, Arnout P. Kalverda, Edward H. Snell, Hironori Niki, Arwen R. Pearson, Michael E. Webb
Citation: Monteiro, D.C.F. et al., 2015. The Structure of the PanD/PanZ Protein Complex Reveals Negative Feedback Regulation of Pantothenate Biosynthesis by Coenzyme A. Chemistry & Biology, 22(4), pp.492-503.
Type: Journal-article
Authors: A. Aquila, A. Barty, C. Bostedt, S. Boutet, G. Carini, D. dePonte, P. Drell, S. Doniach, K. H. Downing, T. Earnest, H. Elmlund, V. Elser, M. Gühr, J. Hajdu, J. Hastings, S. P. Hau-Riege, Z. Huang, E. E. Lattman, F. R. N. C. Maia, S. Marchesini, A. Ourmazd, C. Pellegrini, R. Santra, I. Schlichting, C. Schroer, J. C. H. Spence, I. A. Vartanyants, S. Wakatsuki, W. I. Weis, G. J. Williams
Citation: Aquila, A. et al., 2015. The linac coherent light source single particle imaging road map. Structural Dynamics, 2(4), p.041701.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Thomas Barends, Thomas A. White, Anton Barty, Lutz Foucar, Marc Messerschmidt, Roberto Alonso-Mori, Sabine Botha, Henry Chapman, R. Bruce Doak, Lorenzo Galli, Cornelius Gati, Matthias Gutmann, Jason Koglin, Anders Markvardsen, Karol Nass, Dominik Oberthur, Robert L. Shoeman, Ilme Schlichting, Sébastien Boutet
Citation: Barends, T. et al., 2015. Effects of self-seeding and crystal post-selection on the quality of Monte Carlo-integrated SFX data. Journal of Synchrotron Radiation, 22(3), pp.644-652.
Type: Journal-article
Authors: Jesse Coe, Christopher Kupitz, Shibom Basu, Chelsie E. Conrad, Shatabdi Roy-Chowdhury, Raimund Fromme, Petra Fromme
Citation: Coe, J. et al., 2015. Crystallization of Photosystem II for Time-Resolved Structural Studies Using an X-ray Free Electron Laser. Membrane Proteins--Engineering, Purification and Crystallization, pp.459-482.
Type: Book-chapter
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Volker Schweikhard, Cong A. Meng, Kenji Murakami, Craig D. Kaplan, Roger D. Kornberg, Steven M. Block
Citation: Schweikhard, V. et al., 2014. TFIIF and TFIIS Enhance the Mechanical Persistence of Transcript Elongation by RNA Polymerase II. Biophysical Journal, 106(2), p.486a.
Type: Journal-article
Authors: James D. Zook, Nicholas Sisco, Gina Mo, Debra Hansen, Felicia Craciunescu, Brian Cherry, Kathryn Sykes, Wade Van Horn, Petra Fromme
Citation: Zook, J.D. et al., 2014. High-Resolution NMR Spectroscopy Reveals Structure of Lipoprotein flpp3. Biophysical Journal, 106(2), p.193a.
Type: Journal-article
Authors: Alexander L. Van Slyke, Juan Wang, Avtar Singh, Lois Pollack, Warren R. Zipfel
Citation: Van Slyke, A.L. et al., 2014. Fast Binding Kinetics of RNA Aptamers Measured using a Novel Microfluidic Mixer. Biophysical Journal, 106(2), p.796a.
Type: Journal-article
Authors: Katerina Dörner, Jose Martin Garcia, Christopher Kupitz, Rebekka M. Wachter, Petra Fromme
Citation: Dörner, K. et al., 2014. Detection of Protein Nanocrystals Based on the Reversibility of Crystallization. Biophysical Journal, 106(2), p.458a.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Michael E. Wall, Thomas C. Terwilliger, James S. Fraser, Paul D. Adams, Nicholas K. Sauter, Andrew VanBenschoten
Citation: Wall, M.E. et al., 2014. Diffuse X-Ray Scattering for Ensemble Modeling of Crystalline Proteins. Biophysical Journal, 106(2), p.384a.
Type: Journal-article
Authors: Jose M. Martin, Debra T. Hansen, Andrrey Loskutov, Mark D. Robida, Felicia M. Craciunescu, Kathryn Sykes, Rebekka M. Wachter, Petra Fromme, James P. Allen
Citation: Martin, J.M. et al., 2014. Sequence Analysis and Biophysical Characterization Reveals the Presence of a Long Disordered Region in the CapA Membrane Protein from F. Tularensis. Biophysical Journal, 106(2), p.688a.
Type: Journal-article
Authors: Ken R. Ferguson, Maximilian Bucher, John D. Bozek, Sebastian Carron, Jean-Charles Castagna, Ryan Coffee, G. Ivan Curiel, Michael Holmes, Jacek Krzywinski, Marc Messerschmidt, Michael Minitti, Ankush Mitra, Stefan Moeller, Peter Noonan, Timur Osipov, Sebastian Schorb, Michele Swiggers, Alexander Wallace, Jing Yin, Christoph Bostedt
Citation: Ferguson, K.R. et al., 2015. The Atomic, Molecular and Optical Science instrument at the Linac Coherent Light Source. J Synchrotron Rad, 22(3), pp.492-497.
Type: Journal-article
Authors: R. Sophia Weerth, Karolina Michalska, Craig A. Bingman, Ragothaman M. Yennamalli, Hui Li, Robert Jedrzejczak, Fengbin Wang, Gyorgy Babnigg, Andrzej Joachimiak, Michael G. Thomas, George N. Phillips
Citation: Sophia Weerth, R. et al., 2015. Structure of a cupin protein Plu4264 from Photorhabdus luminescens subsp. laumondii TTO1 at 1.35 ... resolution . Proteins: Structure, Function, and Bioinformatics, 83(5), pp.1003-1003.
Type: Journal-article
Authors: Mengning Liang, Garth J. Williams, Marc Messerschmidt, M. Marvin Seibert, Paul A. Montanez, Matt Hayes, Despina Milathianaki, Andrew Aquila, Mark S. Hunter, Jason E. Koglin, Donald W. Schafer, Serge Guillet, Armin Busse, Robert Bergan, William Olson, Kay Fox, Nathaniel Stewart, Robin Curtis, Alireza Alan Miahnahri, Sébastien Boutet
Citation: Liang, M. et al., 2015. The Coherent X-ray Imaging instrument at the Linac Coherent Light Source. J Synchrotron Rad, 22(3), pp.514-519.
Type: Journal-article
Authors: K. Pande, M. Schmidt, P. Schwander, D. K. Saldin
Citation: Pande, K. et al., 2015. Simulations on time-resolved structure determination of uncrystallized biomolecules in the presence of shot noise. Structural Dynamics, 2(2), p.024103.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Sébastien Boutet, Lutz Foucar, Thomas R. M. Barends, Sabine Botha, R. Bruce Doak, Jason E. Koglin, Marc Messerschmidt, Karol Nass, Ilme Schlichting, M. Marvin Seibert, Robert L. Shoeman, Garth J. Williams
Citation: Boutet, S. et al., 2015. Characterization and use of the spent beam for serial operation of LCLS. J Synchrotron Rad, 22(3), pp.634-643.
Type: Journal-article
Authors: Y. Feng, R. Alonso-Mori, T. R. M. Barends, V. D. Blank, S. Botha, M. Chollet, D. S. Damiani, R. B. Doak, J. M. Glownia, J. M. Koglin, H. T. Lemke, M. Messerschmidt, K. Nass, S. Nelson, I. Schlichting, R. L. Shoeman, Yu. V. Shvyd'ko, M. Sikorski, S. Song, S. Stoupin, S. Terentyev, G. J. Williams, D. Zhu, A. Robert, S. Boutet
Citation: Feng, Y. et al., 2015. Demonstration of simultaneous experiments using thin crystal multiplexing at the Linac Coherent Light Source. J Synchrotron Rad, 22(3), pp.626-633.
Type: Journal-article
Authors: David J. Aceti, Craig A. Bingman, Russell L. Wrobel, Ronnie O. Frederick, Shin-ichi Makino, Karl W. Nichols, Sarata C. Sahu, Lai F. Bergeman, Paul G. Blommel, Claudia C. Cornilescu, Katarzyna A. Gromek, Kory D. Seder, Soyoon Hwang, John G. Primm, Grzegorz Sabat, Frank C. Vojtik, Brian F. Volkman, Zsolt Zolnai, George N. Phillips, John L. Markley, Brian G. Fox
Citation: Aceti, D.J. et al., 2015. Expression platforms for producing eukaryotic proteins: a comparison of E. coli cell-based and wheat germ cell-free synthesis, affinity and solubility tags, and cloning strategies. Journal of Structural and Functional Genomics, 16(2), pp.67-80.
Type: Journal-article
Authors: Dario Mizrachi, Yujie Chen, Jiayan Liu, Hwei-Ming Peng, Ailong Ke, Lois Pollack, Raymond J. Turner, Richard J. Auchus, Matthew P. DeLisa
Citation: Mizrachi, D. et al., 2015. Making water-soluble integral membrane proteins in vivo using an amphipathic protein fusion strategy. Nature Communications, 6, p.6826.
Type: Journal-article
Authors: Yoav Shechtman, Yonina C. Eldar, Oren Cohen, Henry Nicholas Chapman, Jianwei Miao, Mordechai Segev
Citation: Shechtman, Y. et al., 2015. Phase Retrieval with Application to Optical Imaging: A contemporary overview. IEEE Signal Processing Magazine, 32(3), pp.87-109.
Type: Journal-article
Authors: Jinhai Chen, Adam Kell, Khem Acharya, Christopher Kupitz, Petra Fromme, Ryszard Jankowiak
Citation: Chen, J. et al., 2015. Critical assessment of the emission spectra of various photosystem II core complexes. Photosynthesis Research, 124(3), pp.253-265.
Type: Journal-article
Authors: Henry van den Bedem, James S Fraser
Citation: Van den Bedem, H. & Fraser, J.S., 2015. Integrative, dynamic structural biology at atomic resolution--it's about time. Nat Meth, 12(4), pp.307-318.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Dandan Zhang, Zhan-Guo Gao, Kaihua Zhang, Evgeny Kiselev, Steven Crane, Jiang Wang, Silvia Paoletta, Cuiying Yi, Limin Ma, Wenru Zhang, Gye Won Han, Hong Liu, Vadim Cherezov, Vsevolod Katritch, Hualiang Jiang, Raymond C. Stevens, Kenneth A. Jacobson, Qiang Zhao, Beili Wu
Citation: Zhang, D. et al., 2015. Two disparate ligand-binding sites in the human P2Y1 receptor. Nature, 520(7547), pp.317-321.
Type: Journal-article
Authors: Lindsay L Traeger, Jeremy D Volkening, Howell Moffett, Jason R Gallant, Po-Hao Chen, Carl D Novina, George N Phillips, Rene Anand, Gregg B Wells, Matthew Pinch, Robert Güth, Graciela A Unguez, James S Albert, Harold Zakon, Michael R Sussman, Manoj P Samanta
Citation: Traeger, L.L. et al., 2015. Unique patterns of transcript and miRNA expression in the South American strong voltage electric eel (Electrophorus electricus). BMC Genomics, 16(1).
Type: Journal-article
Authors: Gustavo Fenalti, Enrique E. Abola, Chong Wang, Beili Wu, Vadim Cherezov
Citation: Fenalti, G. et al., 2015. Fluorescence Recovery After Photobleaching in Lipidic Cubic Phase (LCP-FRAP). Membrane Proteins--Engineering, Purification and Crystallization, pp.417-437.
Type: Book-chapter
Authors: Bahige G. Abdallah, Shatabdi Roy-Chowdhury, Jesse Coe, Petra Fromme, Alexandra Ros
Citation: Abdallah, B.G. et al., 2015. High Throughput Protein Nanocrystal Fractionation in a Microfluidic Sorter. Anal. Chem., 87(8), pp.4159-4167.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Daniel A Keedy, Lillian R Kenner, Matthew Warkentin, Rahel Woldeyes, Michael C Thompson, Aaron S Brewster, Andrew H Van Benschoten, Elizabeth L Baxter, Jesse B Hopkins, Monarin Uervirojnangkoorn, Scott E McPhillps, Jinhu Song, Roberto Alonso-Mori, James M Holton, William I Weis, Axel T Brunger, S. Michael Soltis, Henrik Lemke, Ana Gonzalez, Nicholas K Sauter, Aina E Cohen, Henry van den Bedem, Robert E Thorne, James Fraser
Citation: Keedy, D.A. et al., 2015. Mapping the Conformational Landscape of a Dynamic Enzyme by XFEL and Multitemperature Crystallography.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: P.F. Lyman, V.L. Shneerson, R. Fung, R.J. Harder, S.S. Parihar, H.T. Johnson-Steigelman, D.K. Saldin
Citation: Lyman, P.F. et al., 2008. Solution to the phase problem for surface X-ray diffraction. Acta Crystallographica Section A Foundations of Crystallography, 64(a1), pp.C109-C109.
Type: Journal-article
Authors: Alexander Heifetz, Gebhard F. X. Schertler, Roland Seifert, Christopher G. Tate, Patrick M. Sexton, Vsevolod V. Gurevich, Daniel Fourmy, Vadim Cherezov, Fiona H. Marshall, R. Ian Storer, Isabel Moraes, Irina G. Tikhonova, Christofer S. Tautermann, Peter Hunt, Tom Ceska, Simon Hodgson, Mike J. Bodkin, Shweta Singh, Richard J. Law, Philip C. Biggin
Citation: Heifetz, A. et al., 2015. GPCR structure, function, drug discovery and crystallography: report from Academia-Industry International Conference (UK Royal Society) Chicheley Hall, 1-2 September 2014. Naunyn-Schmiedeberg's Arch Pharmacol, 388(8), pp.883-903.
Type: Journal-article
Authors: M. Prasciolu, A. F. G. Leontowich, J. Krzywinski, A. Andrejczuk, H. N. Chapman, S. Bajt
Citation: Prasciolu, M. et al., 2015. Fabrication of wedged multilayer Laue lenses. Opt. Mater. Express, 5(4), p.748.
Type: Journal-article
Authors: Justin D Flory, Trey Johnson, Chad R Simmons, Su Lin, Giovanna Ghirlanda, Petra Fromme
Citation: Flory, J.D. et al., 2014. Purification and assembly of thermostable Cy5 labeled γ-PNAs into a 3D DNA nanocage. Artificial DNA: PNA & XNA, 5(3), p.e992181.
Type: Journal-article
Authors: Helen M. Ginn, Marc Messerschmidt, Xiaoyun Ji, Hanwen Zhang, Danny Axford, Richard J. Gildea, Graeme Winter, Aaron S. Brewster, Johan Hattne, Armin Wagner, Jonathan M. Grimes, Gwyndaf Evans, Nicholas K. Sauter, Geoff Sutton, David I. Stuart
Citation: Ginn, H.M. et al., 2015. Structure of CPV17 polyhedrin determined by the improved analysis of serial femtosecond crystallographic data. Nat Comms, 6, p.6435.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Sol M. Gruner, Eaton E. Lattman
Citation: Gruner, S.M. & Lattman, E.E., 2015. Biostructural Science Inspired by Next-Generation X-Ray Sources. Annual Review of Biophysics, 44(1), pp.33-51.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: S. M. Vinko, O. Ciricosta, T. R. Preston, D. S. Rackstraw, C.R.D. Brown, T. Burian, J. Chalupský, B. I. Cho, H.-K. Chung, K. Engelhorn, R. W. Falcone, R. Fiokovinini, V. Hájková, P. A. Heimann, L. Juha, H. J. Lee, R. W. Lee, M. Messerschmidt, B. Nagler, W. Schlotter, J. J. Turner, L. Vysin, U. Zastrau, J. S. Wark
Citation: Vinko, S.M. et al., 2015. Investigation of femtosecond collisional ionization rates in a solid-density aluminium plasma. Nature Communications, 6, p.6397.
Type: Journal-article
Authors: Tomas Ekeberg, Martin Svenda, Chantal Abergel, Filipe R. N. C. Maia, Virginie Seltzer, Jean-Michel Claverie, Max Hantke, Olof Jönsson, Carl Nettelblad, Gijs van der Schot, Mengning Liang, Daniel P. DePonte, Anton Barty, M. Marvin Seibert, Bianca Iwan, Inger Andersson, N. Duane Loh, Andrew V. Martin, Henry Chapman, Christoph Bostedt, John D. Bozek, Ken R. Ferguson, Jacek Krzywinski, Sascha W. Epp, Daniel Rolles, Artem Rudenko, Robert Hartmann, Nils Kimmel, Janos Hajdu
Citation: Ekeberg, T. et al., 2015. Three-Dimensional Reconstruction of the Giant Mimivirus Particle with an X-Ray Free-Electron Laser. Physical Review Letters, 114(9).
Type: Journal-article
Authors: Pavithra Venkatagopalan, Sasha M. Daskalova, Lisa A. Lopez, Kelly A. Dolezal, Brenda G. Hogue
Citation: Venkatagopalan, P. et al., 2015. Coronavirus envelope (E) protein remains at the site of assembly. Virology, 478, pp.75-85.
Type: Journal-article
Authors: Alice Soragni, Shida Yousefi, Christina Stoeckle, Angela B. Soriaga, Michael R. Sawaya, Evelyne Kozlowski, Inès Schmid, Susanne Radonjic-Hoesli, Sebastien Boutet, Garth J. Williams, Marc Messerschmidt, M. Marvin Seibert, Duilio Cascio, Nadia A. Zatsepin, Manfred Burghammer, Christian Riekel, Jacques-Philippe Colletier, Roland Riek, David S. Eisenberg, Hans-Uwe Simon
Citation: Soragni, A. et al., 2015. Toxicity of Eosinophil MBP Is Repressed by Intracellular Crystallization and Promoted by Extracellular Aggregation. Molecular Cell, 57(6), pp.1011-1021.
Type: Journal-article
Authors: Fernanda Camacho-Alanis, Alexandra Ros
Citation: Camacho-Alanis, F. & Ros, A., 2015. Protein dielectrophoresis and the link to dielectric properties. Bioanalysis, 7(3), pp.353-371.
Type: Journal-article
Authors: Karol Nass, Lutz Foucar, Thomas R. M. Barends, Elisabeth Hartmann, Sabine Botha, Robert L. Shoeman, R. Bruce Doak, Roberto Alonso-Mori, Andrew Aquila, Saša Bajt, Anton Barty, Richard Bean, Kenneth R. Beyerlein, Maike Bublitz, Nikolaj Drachmann, Jonas Gregersen, H. Olof Jönsson, Wolfgang Kabsch, Stephan Kassemeyer, Jason E. Koglin, Michael Krumrey, Daniel Mattle, Marc Messerschmidt, Poul Nissen, Linda Reinhard, Oleg Sitsel, Dimosthenis Sokaras, Garth J. Williams, Stefan Hau-Riege, Nicusor Timneanu, Carl Caleman, Henry N. Chapman, Sébastien Boutet, Ilme Schlichting
Citation: Nass, K. et al., 2015. Indications of radiation damage in ferredoxin microcrystals using high-intensity X-FEL beams. J Synchrotron Rad, 22(2), pp.225-238.
Type: Journal-article
Authors: Gustavo Fenalti, Nadia A Zatsepin, Cecilia Betti, Patrick Giguere, Gye Won Han, Andrii Ishchenko, Wei Liu, Karel Guillemyn, Haitao Zhang, Daniel James, Dingjie Wang, Uwe Weierstall, John C H Spence, Sébastien Boutet, Marc Messerschmidt, Garth J Williams, Cornelius Gati, Oleksandr M Yefanov, Thomas A White, Dominik Oberthuer, Markus Metz, Chun Hong Yoon, Anton Barty, Henry N Chapman, Shibom Basu, Jesse Coe, Chelsie E Conrad, Raimund Fromme, Petra Fromme, Dirk Tourwé, Peter W Schiller, Bryan L Roth, Steven Ballet, Vsevolod Katritch, Raymond C Stevens, Vadim Cherezov
Citation: Fenalti, G. et al., 2015. Structural basis for bifunctional peptide recognition at human δ-opioid receptor. Nature Structural & Molecular Biology, 22(3), pp.265-268.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Richard A. Kirian, Richard J. Bean, Kenneth R. Beyerlein, Miriam Barthelmess, Chun Hong Yoon, Fenglin Wang, Flavio Capotondi, Emanuele Pedersoli, Anton Barty, Henry N. Chapman
Citation: Kirian, R.A. et al., 2015. Direct Phasing of Finite Crystals Illuminated with a Free-Electron Laser. Physical Review X, 5(1).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Gijs van der Schot, Martin Svenda, Filipe R. N. C. Maia, Max Hantke, Daniel P. DePonte, M. Marvin Seibert, Andrew Aquila, Joachim Schulz, Richard Kirian, Mengning Liang, Francesco Stellato, Bianca Iwan, Jakob Andreasson, Nicusor Timneanu, Daniel Westphal, F. Nunes Almeida, Dusko Odic, Dirk Hasse, Gunilla H. Carlsson, Daniel S. D. Larsson, Anton Barty, Andrew V. Martin, Sebastian Schorb, Christoph Bostedt, John D. Bozek, Daniel Rolles, Artem Rudenko, Sascha Epp, Lutz Foucar, Benedikt Rudek, Robert Hartmann, Nils Kimmel, Peter Holl, Lars Englert, Ne-Te Duane Loh, Henry N. Chapman, Inger Andersson, Janos Hajdu, Tomas Ekeberg
Citation: Van der Schot, G. et al., 2015. Imaging single cells in a beam of live cyanobacteria with an X-ray laser. Nat Comms, 6, p.5704.
Type: Journal-article
Authors: Benjamin A Barad, Nathaniel Echols, Ray Yu-Ruei Wang, Yifan Cheng, Frank DiMaio, Paul D Adams, James S Fraser
Citation: Barad, B.A. et al., 2015. Side-chain-directed model and map validation for 3D Electron Cryomicroscopy.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Lorenzo Galli, Sang-Kil Son, Thomas A. White, Robin Santra, Henry N. Chapman, Max H. Nanao
Citation: Galli, L. et al., 2015. Towards RIP using free-electron laser SFX data. J Synchrotron Rad, 22(2), pp.249-255.
Type: Journal-article
Authors: Jesse B. Hopkins, Andrea M. Katz, Steve P. Meisburger, Matthew A. Warkentin, Robert E. Thorne, Lois Pollack
Citation: Hopkins, J.B. et al., 2015. A microfabricated fixed path length silicon sample holder improves background subtraction for cryoSAXS. Journal of Applied Crystallography, 48(1), pp.227-237.
Type: Journal-article
Authors: Euiyoung Bae, Sojin Moon, George N. Phillips
Citation: Bae, E., Moon, S. & Phillips, G.N., 2015. Molecular dynamics simulation of a psychrophilic adenylate kinase. Journal of the Korean Society for Applied Biological Chemistry, 58(2), pp.209-212.
Type: Journal-article
Authors: L. Qin, I. Kufareva, L. G. Holden, C. Wang, Y. Zheng, C. Zhao, G. Fenalti, H. Wu, G. W. Han, V. Cherezov, R. Abagyan, R. C. Stevens, T. M. Handel
Citation: Qin, L. et al., 2015. Crystal structure of the chemokine receptor CXCR4 in complex with a viral chemokine. Science, 347(6226), pp.1117-1122.
Type: Journal-article
Authors: Carl Caleman, Nicuşor Tîmneanu, Andrew V. Martin, H. Olof Jönsson, Andrew Aquila, Anton Barty, Howard A. Scott, Thomas A. White, Henry N. Chapman
Citation: Caleman, C. et al., 2015. Ultrafast self-gating Bragg diffraction of exploding nanocrystals in an X-ray laser. Optics Express, 23(2), p.1213.
Type: Journal-article
Authors: E.C. Mattson, K. Pande, S. Cui, M. Weinert, J.H. Chen, C.J. Hirschmugl
Citation: Mattson, E.C. et al., 2015. Investigation of NO2 adsorption on reduced graphene oxide. Chemical Physics Letters, 622, pp.86-91.
Type: Journal-article
Authors: Tomáš Burian, Věra Hájková, Jaromír Chalupský, Luděk Vyšín, Pavel Boháček, Martin Přeček, Jan Wild, Cigdem Özkan, Nicola Coppola, Shafagh Dastjani Farahani, Joachim Schulz, Harald Sinn, Thomas Tschentscher, Jérôme Gaudin, Saša Bajt, Kai Tiedtke, Sven Toleikis, Henry N. Chapman, Rolf A. Loch, Marek Jurek, Ryszard Sobierajski, Jacek Krzywinski, Stefan Moeller, Marion Harmand, Germano Galasso, Mitsuru Nagasono, Karel Saskl, Pavol Sovák, Libor Juha
Citation: Burian, T. et al., 2015. Soft x-ray free-electron laser induced damage to inorganic scintillators. Opt. Mater. Express, 5(2), p.254.
Type: Journal-article
Authors: Alexandre Urzhumtsev, Pavel Afonine, Andrew H Van Benschoten, James Fraser, Paul D Adams
Citation: Urzhumtsev, A. et al., 2015. From deep TLS validation to ensembles of atomic models built from elemental motions.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Andrew Van Benschoten, Pavel Afonine, Thomas Terwilliger, Michael Wall, Colin Jackson, Nicholas Sauter, Paul Adams, Alexandre Urzhumtsev, James Fraser
Citation: Van Benschoten, A. et al., 2015. Predicting X-ray Diffuse Scattering from Translation Libration Screw Structural Ensembles.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Przemyslaw Nogly, Daniel James, Dingjie Wang, Thomas A. White, Nadia Zatsepin, Anastasya Shilova, Garrett Nelson, Haiguang Liu, Linda Johansson, Michael Heymann, Kathrin Jaeger, Markus Metz, Cecilia Wickstrand, Wenting Wu, Petra Båth, Peter Berntsen, Dominik Oberthuer, Valerie Panneels, Vadim Cherezov, Henry Chapman, Gebhard Schertler, Richard Neutze, John Spence, Isabel Moraes, Manfred Burghammer, Joerg Standfuss, Uwe Weierstall
Citation: Nogly, P. et al., 2015. Lipidic cubic phase serial millisecond crystallography using synchrotron radiation. IUCrJ, 2(2), pp.168-176.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Gira Bhabha, Justin T. Biel, James S. Fraser
Citation: Bhabha, G., Biel, J.T. & Fraser, J.S., 2015. Keep on Moving: Discovering and Perturbing the Conformational Dynamics of Enzymes. Acc. Chem. Res., 48(2), pp.423-430.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Thomas D. Grant, Joseph R. Luft, Lester G. Carter, Tsutomu Matsui, Thomas M. Weiss, Anne Martel, Edward H. Snell
Citation: Grant, T.D. et al., 2015. The accurate assessment of small-angle X-ray scattering data. Acta Crystallogr D, 71(1), pp.45-56.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Vignir Isberg, Chris de Graaf, Andrea Bortolato, Vadim Cherezov, Vsevolod Katritch, Fiona H. Marshall, Stefan Mordalski, Jean-Philippe Pin, Raymond C. Stevens, Gerrit Vriend, David E. Gloriam
Citation: Isberg, V. et al., 2015. Generic GPCR residue numbers - aligning topology maps while minding the gaps. Trends in Pharmacological Sciences, 36(1), pp.22-31.
Type: Journal-article
Authors: J. Tenboer, S. Basu, N. Zatsepin, K. Pande, D. Milathianaki, M. Frank, M. Hunter, S. Boutet, G. J. Williams, J. E. Koglin, D. Oberthuer, M. Heymann, C. Kupitz, C. Conrad, J. Coe, S. Roy-Chowdhury, U. Weierstall, D. James, D. Wang, T. Grant, A. Barty, O. Yefanov, J. Scales, C. Gati, C. Seuring, V. Srajer, R. Henning, P. Schwander, R. Fromme, A. Ourmazd, K. Moffat, J. J. Van Thor, J. C. H. Spence, P. Fromme, H. N. Chapman, M. Schmidt
Citation: Tenboer, J. et al., 2014. Time-resolved serial crystallography captures high-resolution intermediates of photoactive yellow protein. Science, 346(6214), pp.1242-1246.
Type: Journal-article
Authors: Ali Dashti, Peter Schwander, Robert Langlois, Russell Fung, Wen Li, Ahmad Hosseinizadeh, Hstau Y. Liao, Jesper Pallesen, Gyanesh Sharma, Vera A. Stupina, Anne E. Simon, Jonathan D. Dinman, Joachim Frank, Abbas Ourmazd
Citation: Dashti, A. et al., 2014. Trajectories of the ribosome as a Brownian nanomachine. Proc Natl Acad Sci USA, 111(49), pp.17492-17497.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: W. Helml, A. R. Maier, W. Schweinberger, I. Grguraš, P. Radcliffe, G. Doumy, C. Roedig, J. Gagnon, M. Messerschmidt, S. Schorb, C. Bostedt, F. Grüner, L. F. DiMauro, D. Cubaynes, J. D. Bozek, Th. Tschentscher, J. T. Costello, M. Meyer, R. Coffee, S. Düsterer, A. L. Cavalieri, R. Kienberger
Citation: Helml, W. et al., 2014. Measuring the temporal structure of few-femtosecond free-electron laser X-ray pulses directly in the time domain. Nature Photonics, 8(12), pp.950-957.
Type: Journal-article
Authors: Yahli Lorch, Barbara Maier-Davis, Roger D. Kornberg
Citation: Lorch, Y., Maier-Davis, B. & Kornberg, R.D., 2014. Role of DNA sequence in chromatin remodeling and the formation of nucleosome-free regions. Genes & Development, 28(22), pp.2492-2497.
Type: Journal-article
Authors: Kenneth R. Beyerlein, Christian Jooss, Anton Barty, Richard Bean, Sébastien Boutet, Sarnjeet S. Dhesi, R. Bruce Doak, Michael Först, Lorenzo Galli, Richard A. Kirian, Joseph Kozak, Michael Lang, Roman Mankowsky, Marc Messerschmidt, John C. H. Spence, Dingjie Wang, Uwe Weierstall, Thomas A. White, Garth J. Williams, Oleksandr Yefanov, Nadia A. Zatsepin, Andrea Cavalleri, Henry N. Chapman
Citation: Beyerlein, K.R. et al., 2014. Trace phase detection and strain characterization from serial X-ray free-electron laser crystallography of a Pr0.5Ca0.5MnO3 powder. Powder Diffraction, 30(S1), pp.S25-S30.
Type: Journal-article
Authors: Paolo Rossi, Lei Shi, Gaohua Liu, Christopher M. Barbieri, Hsiau-Wei Lee, Thomas D. Grant, Joseph R. Luft, Rong Xiao, Thomas B. Acton, Edward H. Snell, Gaetano T. Montelione, David Baker, Oliver F. Lange, Nikolaos G. Sgourakis
Citation: Rossi, P. et al., 2014. A hybrid NMR/SAXS-based approach for discriminating oligomeric protein interfaces using Rosetta. Proteins: Structure, Function, and Bioinformatics, 83(2), pp.309-317.
Type: Journal-article
Authors: Asuka Nakano, Fernanda Camacho-Alanis, Alexandra Ros
Citation: Nakano, A., Camacho-Alanis, F. & Ros, A., 2015. Insulator-based dielectrophoresis with β-galactosidase in nanostructured devices. Analyst, 140(3), pp.860-868.
Type: Journal-article
Authors: Aina E. Cohen, S. Michael Soltis, Ana González, Laura Aguila, Roberto Alonso-Mori, Christopher O. Barnes, Elizabeth L. Baxter, Winnie Brehmer, Aaron S. Brewster, Axel T. Brunger, Guillermo Calero, Joseph F. Chang, Matthieu Chollet, Paul Ehrensberger, Thomas L. Eriksson, Yiping Feng, Johan Hattne, Britt Hedman, Michael Hollenbeck, James M. Holton, Stephen Keable, Brian K. Kobilka, Elena G. Kovaleva, Andrew C. Kruse, Henrik T. Lemke, Guowu Lin, Artem Y. Lyubimov, Aashish Manglik, Irimpan I. Mathews, Scott E. McPhillips, Silke Nelson, John W. Peters, Nicholas K. Sauter, Clyde A. Smith, Jinhu Song, Hilary P. Stevenson, Yingssu Tsai, Monarin Uervirojnangkoorn, Vladimir Vinetsky, Soichi Wakatsuki, William I. Weis, Oleg A. Zadvornyy, Oliver B. Zeldin, Diling Zhu, Keith O. Hodgson
Citation: Cohen, A.E. et al., 2014. Goniometer-based femtosecond crystallography with X-ray free electron lasers. Proceedings of the National Academy of Sciences, 111(48), pp.17122-17127.
Type: Journal-article
Authors: Mi Seul Park, Eduard Bitto, Kyung Rok Kim, Craig A. Bingman, Mitchell D. Miller, Hyun-Jung Kim, Byung Woo Han, George N. Phillips
Citation: Park, M.S. et al., 2014. Crystal Structure of Human Protein N-Terminal Glutamine Amidohydrolase, an Initial Component of the N-End Rule Pathway T. J. Boggon, ed. PLoS ONE, 9(10), p.e111142.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: R. Sophia Weerth, Karolina Michalska, Craig A. Bingman, Ragothaman M. Yennamalli, Hui Li, Robert Jedrzejczak, Fengbin Wang, Gyorgy Babnigg, Andrzej Joachimiak, Michael G. Thomas, George N. Phillips
Citation: Weerth, R.S. et al., 2014. Structure of a cupin protein Plu4264 from Photorhabdus luminescens subsp. laumondii TTO1 at 1.35 ... resolution. Proteins: Structure, Function, and Bioinformatics, 83(2), pp.383-388.
Type: Journal-article
Authors: Ganesh Subramanian, Shibom Basu, Haiguang Liu, Jian-Min Zuo, John C.H. Spence
Citation: Subramanian, G. et al., 2015. Solving protein nanocrystals by cryo-EM diffraction: Multiple scattering artifacts. Ultramicroscopy, 148, pp.87-93.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Dingjie Wang, Uwe Weierstall, Lois Pollack, John Spence
Citation: Wang, D. et al., 2014. Double-focusing mixing jet for XFEL study of chemical kinetics. J Synchrotron Rad, 21(6), pp.1364-1366.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Pilarisetty Tarakeshwar, Julio L. Palma, Gregory P. Holland, Petra Fromme, Jeffery L. Yarger, Vladimiro Mujica
Citation: Tarakeshwar, P. et al., 2014. Probing the Nature of Charge Transfer at Nano-Bio Interfaces: Peptides on Metal Oxide Nanoparticles. The Journal of Physical Chemistry Letters, 5(20), pp.3555-3559.
Type: Journal-article
Authors: Hung T. Nguyen, Suzette A. Pabit, Steve P. Meisburger, Lois Pollack, David A. Case
Citation: Nguyen, H.T. et al., 2014. Accurate small and wide angle x-ray scattering profiles from atomic models of proteins and nucleic acids. The Journal of Chemical Physics, 141(22), p.22D508.
Type: Journal-article
Authors: Brianna B. Williams, Andrew H. Van Benschoten, Peter Cimermancic, Mohamed S. Donia, Michael Zimmermann, Mao Taketani, Atsushi Ishihara, Purna C. Kashyap, James S. Fraser, Michael A. Fischbach
Citation: Williams, B.B. et al., 2014. Discovery and Characterization of Gut Microbiota Decarboxylases that Can Produce the Neurotransmitter Tryptamine. Cell Host & Microbe, 16(4), pp.495-503.
Type: Journal-article
Authors: Haiguang Liu, John C.H. Spence
Citation: Liu, H. & Spence, J.C.H., 2014. The indexing ambiguity in serial femtosecond crystallography (SFX) resolved using an expectation maximization algorithm. IUCrJ, 1(6), pp.393-401.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Tom Pardini, Sébastien Boutet, Joseph Bradley, Tilo Doeppner, Luke B. Fletcher, Dennis F. Gardner, Randy M. Hill, Mark S. Hunter, Jacek Krzywinski, Marc Messerschmidt, Arthur E. Pak, Florian Quirin, Klaus Sokolowski-Tinten, Garth J. Williams, Stefan P. Hau-Riege
Citation: Pardini, T. et al., 2014. Silicon single crystal as back-reflector for high-intensity hard x-rays S. P. Hau-Riege, S. P. Moeller, & M. Yabashi, eds. X-Ray Free-Electron Lasers: Beam Diagnostics, Beamline Instrumentation, and Applications II.
Type: Proceedings-article
Authors: M. R. Bionta, N. Hartmann, M. Weaver, D. French, D. J. Nicholson, J. P. Cryan, J. M. Glownia, K. Baker, C. Bostedt, M. Chollet, Y. Ding, D. M. Fritz, A. R. Fry, D. J. Kane, J. Krzywinski, H. T. Lemke, M. Messerschmidt, S. Schorb, D. Zhu, W. E. White, R. N. Coffee
Citation: Bionta, M.R. et al., 2014. Spectral encoding method for measuring the relative arrival time between x-ray/optical pulses. Review of Scientific Instruments, 85(8), p.083116.
Type: Journal-article
Authors: S. Karkehabadi, K. E. Helmich, T. Kaper, H. Hansson, N.-E. Mikkelsen, M. Gudmundsson, K. Piens, M. Fujdala, G. Banerjee, J. S. Scott-Craig, J. D. Walton, G. N. Phillips, M. Sandgren
Citation: Karkehabadi, S. et al., 2014. Biochemical Characterization and Crystal Structures of a Fungal Family 3  -Glucosidase, Cel3A from Hypocrea jecorina. Journal of Biological Chemistry, 289(45), pp.31624-31637.
Type: Journal-article
Authors: Kevin K. Desai, Craig A. Bingman, Chin L. Cheng, George N. Phillips, Ronald T. Raines
Citation: Desai, K.K. et al., 2014. Structure of RNA 3′-phosphate cyclase bound to substrate RNA. RNA, 20(10), pp.1560-1566.
Type: Journal-article
Authors: K. Tiedtke, A. A. Sorokin, U. Jastrow, P. Juranić, S. Kreis, N. Gerken, M. Richter, U. Arp, Y. Feng, D. Nordlund, R. Soufli, M. Fernández-Perea, L. Juha, P. Heimann, B. Nagler, H. J. Lee, S. Mack, M. Cammarata, O. Krupin, M. Messerschmidt, M. Holmes, M. Rowen, W. Schlotter, S. Moeller, J. J. Turner
Citation: Tiedtke, K. et al., 2014. Absolute pulse energy measurements of soft x-rays at the Linac Coherent Light Source. Optics Express, 22(18), p.21214.
Type: Journal-article
Authors: Zhen Gong, Sarah A. Kessans, Lusheng Song, Katerina Dörner, Ho-Hsien Lee, Lydia R Meador, Joshua LaBaer, Brenda G. Hogue, Tsafrir S. Mor, Petra Fromme
Citation: Gong, Z. et al., 2014. Recombinant expression, purification, and biophysical characterization of the transmembrane and membrane proximal domains of HIV-1 gp41. Protein Science, 23(11), pp.1607-1618.
Type: Journal-article
Authors: M. Azubel, J. Koivisto, S. Malola, D. Bushnell, G. L. Hura, A. L. Koh, H. Tsunoyama, T. Tsukuda, M. Pettersson, H. Hakkinen, R. D. Kornberg
Citation: Azubel, M. et al., 2014. Electron microscopy of gold nanoparticles at atomic resolution. Science, 345(6199), pp.909-912.
Type: Journal-article
Authors: Ho-Hsien Lee, Irene Cherni, HongQi Yu, Raimund Fromme, Jeffrey D. Doran, Ingo Grotjohann, Michele Mittman, Shibom Basu, Arpan Deb, Katerina Dörner, Andrew Aquila, Anton Barty, Sébastien Boutet, Henry N. Chapman, R. Bruce Doak, Mark S. Hunter, Daniel James, Richard A. Kirian, Christopher Kupitz, Robert M. Lawrence, Haiguang Liu, Karol Nass, Ilme Schlichting, Kevin E. Schmidt, M. Marvin Seibert, Robert L. Shoeman, John C. H. Spence, Francesco Stellato, Uwe Weierstall, Garth J. Williams, Chunhong Yoon, Dingjie Wang, Nadia A. Zatsepin, Brenda G. Hogue, Nobuyuki Matoba, Petra Fromme, Tsafrir S. Mor
Citation: Lee, H.-H. et al., 2014. Expression, purification and crystallization of CTB-MPR, a candidate mucosal vaccine component against HIV-1. IUCrJ, 1(5), pp.305-317.
Type: Journal-article
Authors: M. R. Sawaya, D. Cascio, M. Gingery, J. Rodriguez, L. Goldschmidt, J.-P. Colletier, M. M. Messerschmidt, S. Boutet, J. E. Koglin, G. J. Williams, A. S. Brewster, K. Nass, J. Hattne, S. Botha, R. B. Doak, R. L. Shoeman, D. P. DePonte, H.-W. Park, B. A. Federici, N. K. Sauter, I. Schlichting, D. S. Eisenberg
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Type: Journal-article
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Citation: Stern, S. et al., 2014. Toward atomic resolution diffractive imaging of isolated molecules with X-ray free-electron lasers. Faraday Discuss., 171, pp.393-418.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Wei Liu, Andrii Ishchenko, Vadim Cherezov
Citation: Liu, W., Ishchenko, A. & Cherezov, V., 2014. Preparation of microcrystals in lipidic cubic phase for serial femtosecond crystallography. Nature Protocols, 9(9), pp.2123-2134.
Type: Journal-article
Authors: Mark S. Hunter, Brent Segelke, Marc Messerschmidt, Garth J. Williams, Nadia A. Zatsepin, Anton Barty, W. Henry Benner, David B. Carlson, Matthew Coleman, Alexander Graf, Stefan P. Hau-Riege, Tommaso Pardini, M. Marvin Seibert, James Evans, Sébastien Boutet, Matthias Frank
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Type: Journal-article
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Citation: Arnlund, D. et al., 2014. Visualizing a protein quake with time-resolved X-ray scattering at a free-electron laser. Nature Methods, 11(9), pp.923-926.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Adam J Book, Ragothaman M Yennamalli, Taichi E Takasuka, Cameron R Currie, George N Phillips, Brian G Fox
Citation: Book, A.J. et al., 2014. Evolution of substrate specificity in bacterial AA10 lytic polysaccharide monooxygenases. Biotechnology for Biofuels, 7(1), p.109.
Type: Journal-article
Authors: Hongnan Cao, Jonathan D. Walton, Phil Brumm, George N. Phillips
Citation: Cao, H. et al., 2014. Structure and Substrate Specificity of a Eukaryotic Fucosidase fromFusarium graminearum. Journal of Biological Chemistry, 289(37), pp.25624-25638.
Type: Journal-article
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Type: Journal-article
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Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Type: Journal-article
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Type: Journal-article
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Citation: Calero, G. et al., 2014. Identifying, studying and making good use of macromolecular crystals. Acta Crystallogr Sect F Struct Biol Cryst Commun, 70(8), pp.993-1008.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Katrin R. Siefermann, Chaitanya D. Pemmaraju, Stefan Neppl, Andrey Shavorskiy, Amy A. Cordones, Josh Vura-Weis, Daniel S. Slaughter, Felix P. Sturm, Fabian Weise, Hendrik Bluhm, Matthew L. Strader, Hana Cho, Ming-Fu Lin, Camila Bacellar, Champak Khurmi, Jinghua Guo, Giacomo Coslovich, Joseph S. Robinson, Robert A. Kaindl, Robert W. Schoenlein, Ali Belkacem, Daniel M. Neumark, Stephen R. Leone, Dennis Nordlund, Hirohito Ogasawara, Oleg Krupin, Joshua J. Turner, William F. Schlotter, Michael R. Holmes, Marc Messerschmidt, Michael P. Minitti, Sheraz Gul, Jin Z. Zhang, Nils Huse, David Prendergast, Oliver Gessner
Citation: Siefermann, K.R. et al., 2014. Atomic-Scale Perspective of Ultrafast Charge Transfer at a Dye-Semiconductor Interface. The Journal of Physical Chemistry Letters, 5(15), pp.2753-2759.
Type: Journal-article
Authors: Jan Kern, Rosalie Tran, Roberto Alonso-Mori, Sergey Koroidov, Nathaniel Echols, Johan Hattne, Mohamed Ibrahim, Sheraz Gul, Hartawan Laksmono, Raymond G. Sierra, Richard J. Gildea, Guangye Han, Julia Hellmich, Benedikt Lassalle-Kaiser, Ruchira Chatterjee, Aaron S. Brewster, Claudiu A. Stan, Carina Glöckner, Alyssa Lampe, Dörte DiFiore, Despina Milathianaki, Alan R. Fry, M. Marvin Seibert, Jason E. Koglin, Erik Gallo, Jens Uhlig, Dimosthenis Sokaras, Tsu-Chien Weng, Petrus H. Zwart, David E. Skinner, Michael J. Bogan, Marc Messerschmidt, Pieter Glatzel, Garth J. Williams, Sébastien Boutet, Paul D. Adams, Athina Zouni, Johannes Messinger, Nicholas K. Sauter, Uwe Bergmann, Junko Yano, Vittal K. Yachandra
Citation: Kern, J. et al., 2014. Taking snapshots of photosynthetic water oxidation using femtosecond X-ray diffraction and spectroscopy. Nature Communications, 5.
Type: Journal-article
Authors: Christopher Kupitz, Shibom Basu, Ingo Grotjohann, Raimund Fromme, Nadia A. Zatsepin, Kimberly N. Rendek, Mark S. Hunter, Robert L. Shoeman, Thomas A. White, Dingjie Wang, Daniel James, Jay-How Yang, Danielle E. Cobb, Brenda Reeder, Raymond G. Sierra, Haiguang Liu, Anton Barty, Andrew L. Aquila, Daniel Deponte, Richard A. Kirian, Sadia Bari, Jesse J. Bergkamp, Kenneth R. Beyerlein, Michael J. Bogan, Carl Caleman, Tzu-Chiao Chao, Chelsie E. Conrad, Katherine M. Davis, Holger Fleckenstein, Lorenzo Galli, Stefan P. Hau-Riege, Stephan Kassemeyer, Hartawan Laksmono, Mengning Liang, Lukas Lomb, Stefano Marchesini, Andrew V. Martin, Marc Messerschmidt, Despina Milathianaki, Karol Nass, Alexandra Ros, Shatabdi Roy-Chowdhury, Kevin Schmidt, Marvin Seibert, Jan Steinbrener, Francesco Stellato, Lifen Yan, Chunhong Yoon, Thomas A. Moore, Ana L. Moore, Yulia Pushkar, Garth J. Williams, Sébastien Boutet, R. Bruce Doak, Uwe Weierstall, Matthias Frank, Henry N. Chapman, John C. H. Spence, Petra Fromme
Citation: Kupitz, C. et al., 2014. Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser. Nature, 513(7517), pp.261-265.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Yujie Chen, Joshua M. Tokuda, Traci Topping, Julie L. Sutton, Steve P. Meisburger, Suzette A. Pabit, Lisa M. Gloss, Lois Pollack
Citation: Chen, Y. et al., 2014. Revealing transient structures of nucleosomes as DNA unwinds. Nucleic Acids Research, 42(13), pp.8767-8776.
Type: Journal-article
Authors: Diana Fusco, Timothy J. Barnum, Andrew E. Bruno, Joseph R. Luft, Edward H. Snell, Sayan Mukherjee, Patrick Charbonneau
Citation: Fusco, D. et al., 2014. Statistical Analysis of Crystallization Database Links Protein Physico-Chemical Features with Crystallization Mechanisms B. Kobe, ed. PLoS ONE, 9(7), p.e101123.
Type: Journal-article
Authors: Andrew E. Bruno, Amanda M. Ruby, Joseph R. Luft, Thomas D. Grant, Jayaraman Seetharaman, Gaetano T. Montelione, John F. Hunt, Edward H. Snell
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Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: J. R. Gallant, L. L. Traeger, J. D. Volkening, H. Moffett, P.-H. Chen, C. D. Novina, G. N. Phillips, R. Anand, G. B. Wells, M. Pinch, R. Guth, G. A. Unguez, J. S. Albert, H. H. Zakon, M. P. Samanta, M. R. Sussman
Citation: Gallant, J.R. et al., 2014. Genomic basis for the convergent evolution of electric organs. Science, 344(6191), pp.1522-1525.
Type: Journal-article
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Type: Journal-article
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Citation: Sellberg, J.A. et al., 2014. Ultrafast X-ray probing of water structure below the homogeneous ice nucleation temperature. Nature, 510(7505), pp.381-384.
Type: Journal-article
Authors: Jo E. Lomax, Christopher M. Bianchetti, Aram Chang, George N. Phillips, Brian G. Fox, Ronald T. Raines
Citation: Lomax, J.E. et al., 2014. Functional Evolution of Ribonuclease Inhibitor: Insights from Birds and Reptiles. Journal of Molecular Biology, 426(17), pp.3041-3056.
Type: Journal-article
Authors: Sojin Moon, Ryan M. Bannen, Thomas J. Rutkoski, George N. Phillips, Euiyoung Bae
Citation: Moon, S. et al., 2014. Effectiveness and limitations of local structural entropy optimization in the thermal stabilization of mesophilic and thermophilic adenylate kinases. Proteins: Structure, Function, and Bioinformatics, 82(10), pp.2631-2642.
Type: Journal-article
Authors: Geoffrey K Feld, Matthias Frank
Citation: Feld, G.K. & Frank, M., 2014. Enabling membrane protein structure and dynamics with X-ray free electron lasers. Current Opinion in Structural Biology, 27, pp.69-78.
Type: Journal-article
Authors: D Rolles, R Boll, M Adolph, A Aquila, C Bostedt, J D Bozek, H N Chapman, R Coffee, N Coppola, P Decleva, T Delmas, S W Epp, B Erk, F Filsinger, L Foucar, L Gumprecht, A Hömke, T Gorkhover, L Holmegaard, P Johnsson, Ch Kaiser, F Krasniqi, K-U Kühnel, J Maurer, M Messerschmidt, R Moshammer, W Quevedo, I Rajkovic, A Rouzée, B Rudek, I Schlichting, C Schmidt, S Schorb, C D Schröter, J Schulz, H Stapelfeldt, M Stener, S Stern, S Techert, J Thøgersen, M J J Vrakking, A Rudenko, J Küpper, J Ullrich
Citation: Rolles, D. et al., 2014. Femtosecond x-ray photoelectron diffraction on gas-phase dibromobenzene molecules. Journal of Physics B: Atomic, Molecular and Optical Physics, 47(12), p.124035.
Type: Journal-article
Authors: H. N. Chapman, C. Caleman, N. Timneanu
Citation: Chapman, H.N., Caleman, C. & Timneanu, N., 2014. Diffraction before destruction. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130313-20130313.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: W. Liu, D. Wacker, C. Wang, E. Abola, V. Cherezov
Citation: Liu, W. et al., 2014. Femtosecond crystallography of membrane proteins in the lipidic cubic phase. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130314-20130314.
Type: Journal-article
Authors: C. Kupitz, I. Grotjohann, C. E. Conrad, S. Roy-Chowdhury, R. Fromme, P. Fromme
Citation: Kupitz, C. et al., 2014. Microcrystallization techniques for serial femtosecond crystallography using photosystem II from Thermosynechococcus elongatus as a model system. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130316-20130316.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: J. C. H. Spence, N. A. Zatsepin, C. Li
Citation: Spence, J.C.H., Zatsepin, N.A. & Li, C., 2014. Coherent convergent-beam time-resolved X-ray diffraction. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130325-20130325.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: A. Hosseinizadeh, P. Schwander, A. Dashti, R. Fung, R. M. D'Souza, A. Ourmazd
Citation: Hosseinizadeh, A. et al., 2014. High-resolution structure of viruses from random diffraction snapshots. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130326-20130326.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: R. A. Kirian, R. J. Bean, K. R. Beyerlein, O. M. Yefanov, T. A. White, A. Barty, H. N. Chapman
Citation: Kirian, R.A. et al., 2014. Phasing coherently illuminated nanocrystals bounded by partial unit cells. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130331-20130331.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: O. Yefanov, C. Gati, G. Bourenkov, R. A. Kirian, T. A. White, J. C. H. Spence, H. N. Chapman, A. Barty
Citation: Yefanov, O. et al., 2014. Mapping the continuous reciprocal space intensity distribution of X-ray serial crystallography. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130333-20130333.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: U. Weierstall
Citation: Weierstall, U., 2014. Liquid sample delivery techniques for serial femtosecond crystallography. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130337-20130337.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: B. Pedrini, C.-J. Tsai, G. Capitani, C. Padeste, M. S. Hunter, N. A. Zatsepin, A. Barty, W. H. Benner, S. Boutet, G. K. Feld, S. P. Hau-Riege, R. A. Kirian, C. Kupitz, M. Messerschmitt, J. I. Ogren, T. Pardini, B. Segelke, G. J. Williams, J. C. H. Spence, R. Abela, M. Coleman, J. E. Evans, G. F. X. Schertler, M. Frank, X.-D. Li
Citation: Pedrini, B. et al., 2014. 7 A resolution in protein two-dimensional-crystal X-ray diffraction at Linac Coherent Light Source. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130500-20130500.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: P. Schwander, R. Fung, A. Ourmazd
Citation: Schwander, P., Fung, R. & Ourmazd, A., 2014. Conformations of macromolecules and their complexes from heterogeneous datasets. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130567-20130567.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: K. Pande, P. Schwander, M. Schmidt, D. K. Saldin
Citation: Pande, K. et al., 2014. Deducing fast electron density changes in randomly orientated uncrystallized biomolecules in a pump-probe experiment. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130332-20130332.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: M. Caffrey, D. Li, N. Howe, S. T. A. Shah
Citation: Caffrey, M. et al., 2014. "Hit and run" serial femtosecond crystallography of a membrane kinase in the lipid cubic phase. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130621-20130621.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Diling Zhu, Yiping Feng, Stanislav Stoupin, Sergey A. Terentyev, Henrik T. Lemke, David M. Fritz, Matthieu Chollet, J. M. Glownia, Roberto Alonso-Mori, Marcin Sikorski, Sanghoon Song, Tim B. van Driel, Garth J. Williams, Marc Messerschmidt, Sébastien Boutet, Vladimir D. Blank, Yuri V. Shvyd'ko, Aymeric Robert
Citation: Zhu, D. et al., 2014. Performance of a beam-multiplexing diamond crystal monochromator at the Linac Coherent Light Source. Review of Scientific Instruments, 85(6), p.063106.
Type: Journal-article
Authors: Asuka Nakano, Jinghui Luo, Alexandra Ros
Citation: Nakano, A., Luo, J. & Ros, A., 2014. Temporal and Spatial Temperature Measurement in Insulator-Based Dielectrophoretic Devices. Analytical Chemistry, 86(13), pp.6516-6524.
Type: Journal-article
Authors: Chufeng Li, Ganesh Subramanian, John C.H. Spence
Citation: Li, C., Subramanian, G. & Spence, J.C.H., 2014. Time-Resolved Spectra from Millivolt EELS Data. Microscopy and Microanalysis, 20(03), pp.837-846.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Daniel A. Keedy, Henry van den Bedem, David A. Sivak, Gregory A. Petsko, Dagmar Ringe, Mark A. Wilson, James S. Fraser
Citation: Keedy, D.A. et al., 2014. Crystal Cryocooling Distorts Conformational Heterogeneity in a Model Michaelis Complex of DHFR. Structure, 22(6), pp.899-910.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: H. P. Stevenson, A. M. Makhov, M. Calero, A. L. Edwards, O. B. Zeldin, I. I. Mathews, G. Lin, C. O. Barnes, H. Santamaria, T. M. Ross, S. M. Soltis, C. Khosla, V. Nagarajan, J. F. Conway, A. E. Cohen, G. Calero
Citation: Stevenson, H.P. et al., 2014. Use of transmission electron microscopy to identify nanocrystals of challenging protein targets. Proceedings of the National Academy of Sciences, 111(23), pp.8470-8475.
Type: Journal-article
Authors: Tom Pardini, Sébastien Boutet, Joseph Bradley, Tilo Döppner, Luke B. Fletcher, Dennis F. Gardner, Randy M. Hill, Mark S. Hunter, Jacek Krzywinski, Marc Messerschmidt, Arthur E. Pak, Florian Quirin, Klaus Sokolowski-Tinten, Garth J. Williams, Stefan P. Hau-Riege
Citation: Pardini, T. et al., 2014. Silicon Mirrors for High-Intensity X-Ray Pump and Probe Experiments. Physical Review Applied, 1(4).
Type: Journal-article
Authors: Joseph R. Luft, Thomas D. Grant, Jennifer R. Wolfley, Edward H. Snell
Citation: Luft, J.R. et al., 2014. A new view on crystal harvesting. J Appl Crystallogr, 47(3), pp.1158-1161.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Ragothaman Yennamalli, Raj Arangarasan, Aaron Bryden, Michael Gleicher, George N. Phillips
Citation: Yennamalli, R. et al., 2014. Using a commodity high-definition television for collaborative structural biology. J Appl Crystallogr, 47(3), pp.1153-1157.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Marcus Fischer, Ryan G. Coleman, James S. Fraser, Brian K. Shoichet
Citation: Fischer, M. et al., 2014. Incorporation of protein flexibility and conformational energy penalties in docking screens to improve ligand discovery. Nature Chemistry, 6(7), pp.575-583.
Type: Journal-article
Authors: Justin D. Flory, Chad R. Simmons, Su Lin, Trey Johnson, Alessio Andreoni, James Zook, Giovanna Ghirlanda, Yan Liu, Hao Yan, Petra Fromme
Citation: Flory, J.D. et al., 2014. Low Temperature Assembly of Functional 3D DNA-PNA-Protein Complexes. Journal of the American Chemical Society, 136(23), pp.8283-8295.
Type: Journal-article
Authors: Ivan Komarov, Ali Dashti, Roshan M. D'Souza
Citation: Komarov, I., Dashti, A. & D'Souza, R.M., 2014. Fast k-NNG Construction with GPU-Based Quick Multi-Select M. Gomez-Gesteira, ed. PLoS ONE, 9(5), p.e92409.
Type: Journal-article
Authors: John C.H. Spence
Citation: Spence, J.C.H., 2014. X-ray lasers and crystallography. IUCrJ, 1(3), pp.151-152.
Type: Journal-article
Authors: V. Schweikhard, C. Meng, K. Murakami, C. D. Kaplan, R. D. Kornberg, S. M. Block
Citation: Schweikhard, V. et al., 2014. Transcription factors TFIIF and TFIIS promote transcript elongation by RNA polymerase II by synergistic and independent mechanisms. Proceedings of the National Academy of Sciences, 111(18), pp.6642-6647.
Type: Journal-article
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Citation: Mucke, M. et al., 2014. Mapping the decay of double core hole states of atoms and molecules. Journal of Physics: Conference Series, 488(3), p.032021.
Type: Journal-article
Authors: Jasper J. van Thor, Mark M. Warren, Craig N. Lincoln, Matthieu Chollet, Henrik Till Lemke, David M. Fritz, Marius Schmidt, Jason Tenboer, Zhong Ren, Vukica Srajer, Keith Moffat, Tim Graber
Citation: Van Thor, J.J. et al., 2014. Signal to noise considerations for single crystal femtosecond time resolved crystallography of the Photoactive Yellow Protein. Faraday Discuss., 171, pp.439-455.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: G A Carini, S Boutet, M Chollet, A Dragone, G Haller, P A Hart, S C Herrmann, C J Kenney, J Koglin, M Messerschmidt, S Nelson, J Pines, A Robert, S Song, J B Thayer, G J Williams, D Zhu
Citation: Carini, G.A. et al., 2014. Experience with the CSPAD during dedicated detector runs at LCLS. Journal of Physics: Conference Series, 493, p.012011.
Type: Journal-article
Authors: Marius Schmidt, Dilano K. Saldin
Citation: Schmidt, M. & Saldin, D.K., 2014. Enzyme transient state kinetics in crystal and solution from the perspective of a time-resolved crystallographer. Structural Dynamics, 1(2), p.024701.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Matthias Fuchs
Citation: Fuchs, M., 2014. Nonlinear X-ray Compton Scattering. Research in Optical Sciences.
Type: Proceedings-article
Authors: John C. H. Spence
Citation: Spence, J.C.H., 2014. Approaches to time-resolved diffraction using an XFEL. Faraday Discuss., 171, pp.429-438.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Yang Ouk Jung, Jae Hyuk Lee, Joonghan Kim, Marius Schmidt, Keith Moffat, Vukica Šrajer, Hyotcherl Ihee
Citation: Jung, Y.O. et al., 2014. Reply to "Contradictions in X-ray structures of intermediates in the photocycle of photoactive yellow protein." Nature Chem, 6(4), pp.259-260.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Fengbin Wang, Shanteri Singh, Jianjun Zhang, Tyler D. Huber, Kate E. Helmich, Manjula Sunkara, Katherine A. Hurley, Randal D. Goff, Craig A. Bingman, Andrew J. Morris, Jon S. Thorson, George N. Phillips
Citation: Wang, F. et al., 2014. Understanding molecular recognition of promiscuity of thermophilic methionine adenosyltransferase sMAT fromSulfolobus solfataricus. FEBS Journal, 281(18), pp.4224-4239.
Type: Journal-article
Authors: J. Szlachetko, C. J. Milne, J. Hoszowska, J.-Cl. Dousse, W. Błachucki, J. Sà, Y. Kayser, M. Messerschmidt, R. Abela, S. Boutet, C. David, G. Williams, M. Pajek, B. D. Patterson, G. Smolentsev, J. A. van Bokhoven, M. Nachtegaal
Citation: Szlachetko, J. et al., 2014. Communication: The electronic structure of matter probed with a single femtosecond hard x-ray pulse. Structural Dynamics, 1(2), p.021101.
Type: Journal-article
Authors: Johan Hattne, Nathaniel Echols, Rosalie Tran, Jan Kern, Richard J Gildea, Aaron S Brewster, Roberto Alonso-Mori, Carina Glöckner, Julia Hellmich, Hartawan Laksmono, Raymond G Sierra, Benedikt Lassalle-Kaiser, Alyssa Lampe, Guangye Han, Sheraz Gul, Dörte DiFiore, Despina Milathianaki, Alan R Fry, Alan Miahnahri, William E White, Donald W Schafer, M Marvin Seibert, Jason E Koglin, Dimosthenis Sokaras, Tsu-Chien Weng, Jonas Sellberg, Matthew J Latimer, Pieter Glatzel, Petrus H Zwart, Ralf W Grosse-Kunstleve, Michael J Bogan, Marc Messerschmidt, Garth J Williams, Sébastien Boutet, Johannes Messinger, Athina Zouni, Junko Yano, Uwe Bergmann, Vittal K Yachandra, Paul D Adams, Nicholas K Sauter
Citation: Hattne, J. et al., 2014. Accurate macromolecular structures using minimal measurements from X-ray free-electron lasers. Nature Methods, 11(5), pp.545-548.
Type: Journal-article
Authors: D.S. Rackstraw, S.M. Vinko, O. Ciricosta, B.I. Cho, K. Engelhorn, H.-K. Chung, C.R.D. Brown, T. Burian, J. Chalupský, R.W. Falcone, C. Graves, V. Hájková, A. Higginbotham, L. Juha, J. Krzywinski, H.J. Lee, M. Messerschmidt, C. Murphy, Y. Ping, A. Scherz, W. Schlotter, S. Toleikis, J.J. Turner, L. Vysin, T. Wang, B. Wu, U. Zastrau, D. Zhu, B. Nagler, R.W. Lee, P.A. Heimann, J.S. Wark
Citation: Rackstraw, D.S. et al., 2014. Opacity effects in a solid-density aluminium plasma created by photo-excitation with an X-ray laser. High Energy Density Physics, 11, pp.59-69.
Type: Journal-article
Authors: Sojin Moon, Du-kyo Jung, George N. Phillips, Euiyoung Bae
Citation: Moon, S. et al., 2014. An integrated approach for thermal stabilization of a mesophilic adenylate kinase. Proteins: Structure, Function, and Bioinformatics, 82(9), pp.1947-1959.
Type: Journal-article
Authors: Jochen Küpper, Stephan Stern, Lotte Holmegaard, Frank Filsinger, Arnaud Rouzée, Artem Rudenko, Per Johnsson, Andrew V. Martin, Marcus Adolph, Andrew Aquila, Saša Bajt, Anton Barty, Christoph Bostedt, John Bozek, Carl Caleman, Ryan Coffee, Nicola Coppola, Tjark Delmas, Sascha Epp, Benjamin Erk, Lutz Foucar, Tais Gorkhover, Lars Gumprecht, Andreas Hartmann, Robert Hartmann, Günter Hauser, Peter Holl, Andre Hömke, Nils Kimmel, Faton Krasniqi, Kai-Uwe Kühnel, Jochen Maurer, Marc Messerschmidt, Robert Moshammer, Christian Reich, Benedikt Rudek, Robin Santra, Ilme Schlichting, Carlo Schmidt, Sebastian Schorb, Joachim Schulz, Heike Soltau, John C. H. Spence, Dmitri Starodub, Lothar Strüder, Jan Thøgersen, Marc J. J. Vrakking, Georg Weidenspointner, Thomas A. White, Cornelia Wunderer, Gerard Meijer, Joachim Ullrich, Henrik Stapelfeldt, Daniel Rolles, Henry N. Chapman
Citation: Küpper, J. et al., 2014. X-Ray Diffraction from Isolated and Strongly Aligned Gas-Phase Molecules with a Free-Electron Laser. Physical Review Letters, 112(8).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Jose M. Martin-Garcia, Debra T. Hansen, James Zook, Andrey V. Loskutov, Mark D. Robida, Felicia M. Craciunescu, Kathryn F. Sykes, Rebekka M. Wachter, Petra Fromme, James P. Allen
Citation: Martin-Garcia, J.M. et al., 2014. Purification and Biophysical Characterization of the CapA Membrane Protein FTT0807 fromFrancisella tularensis. Biochemistry, 53(12), pp.1958-1970.
Type: Journal-article
Authors: Jinghui Luo, Bahige G. Abdallah, Gregory G. Wolken, Edgar A. Arriaga, Alexandra Ros
Citation: Luo, J. et al., 2014. Insulator-based dielectrophoresis of mitochondria. Biomicrofluidics, 8(2), p.021801.
Type: Journal-article
Authors: Uwe Weierstall, Daniel James, Chong Wang, Thomas A. White, Dingjie Wang, Wei Liu, John C. H. Spence, R. Bruce Doak, Garrett Nelson, Petra Fromme, Raimund Fromme, Ingo Grotjohann, Christopher Kupitz, Nadia A. Zatsepin, Haiguang Liu, Shibom Basu, Daniel Wacker, Gye Won Han, Vsevolod Katritch, Sébastien Boutet, Marc Messerschmidt, Garth J. Williams, Jason E. Koglin, M. Marvin Seibert, Markus Klinker, Cornelius Gati, Robert L. Shoeman, Anton Barty, Henry N. Chapman, Richard A. Kirian, Kenneth R. Beyerlein, Raymond C. Stevens, Dianfan Li, Syed T. A. Shah, Nicole Howe, Martin Caffrey, Vadim Cherezov
Citation: Weierstall, U. et al., 2014. Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography. Nat Comms, 5.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Matthias Frank, David B. Carlson, Mark S. Hunter, Garth J. Williams, Marc Messerschmidt, Nadia A. Zatsepin, Anton Barty, W. Henry Benner, Kaiqin Chu, Alexander T. Graf, Stefan P. Hau-Riege, Richard A. Kirian, Celestino Padeste, Tommaso Pardini, Bill Pedrini, Brent Segelke, M. Marvin Seibert, John C. H. Spence, Ching-Ju Tsai, Stephen M. Lane, Xiao-Dan Li, Gebhard Schertler, Sebastien Boutet, Matthew Coleman, James E. Evans
Citation: Frank, M. et al., 2014. Femtosecond X-ray diffraction from two-dimensional protein crystals. IUCrJ, 1(2), pp.95-100.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: R. Paul, R. E. Jinkerson, K. Buss, J. Steel, R. Mohr, W. R. Hess, M. Chen, P. Fromme
Citation: Paul, R. et al., 2014. Draft Genome Sequence of the Filamentous Cyanobacterium Leptolyngbya sp. Strain Heron Island J, Exhibiting Chromatic Acclimation. Genome Announcements, 2(1), pp.e01166-13-e01166-13.
Type: Journal-article
Authors: Michael E. Wall, Paul D. Adams, James S. Fraser, Nicholas K. Sauter
Citation: Wall, M.E. et al., 2014. Diffuse X-Ray Scattering to Model Protein Motions. Structure, 22(2), pp.182-184.
Type: Journal-article
Authors: Sean McSweeney, Petra Fromme
Citation: McSweeney, S. & Fromme, P., 2014. Crystallography: Sources of inspiration. Nature, 505(7485), pp.620-621.
Type: Journal-article
Authors: K. K. Desai, C. L. Cheng, C. A. Bingman, G. N. Phillips, R. T. Raines
Citation: Desai, K.K. et al., 2014. A tRNA splicing operon: Archease endows RtcB with dual GTP/ATP cofactor specificity and accelerates RNA ligation. Nucleic Acids Research, 42(6), pp.3931-3942.
Type: Journal-article
Authors: Gheorghe Acbas, Katherine A. Niessen, Edward H. Snell, A.G. Markelz
Citation: Acbas, G. et al., 2014. Optical measurements of long-range protein vibrations. Nature Communications, 5.
Type: Journal-article
Authors: Joe P. J. Chen, John C. H. Spence, Rick P. Millane
Citation: Chen, J.P.J., Spence, J.C.H. & Millane, R.P., 2014. Direct phasing in femtosecond nanocrystallography. I. Diffraction characteristics. Acta Cryst Sect A Found Adv, 70(2), pp.143-153.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Joe P. J. Chen, John C. H. Spence, Rick P. Millane
Citation: Chen, J.P.J., Spence, J.C.H. & Millane, R.P., 2014. Direct phasing in femtosecond nanocrystallography. II. Phase retrieval. Acta Cryst Sect A Found Adv, 70(2), pp.154-161.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: R. B. Fenwick, H. van den Bedem, J. S. Fraser, P. E. Wright
Citation: Fenwick, R.B. et al., 2014. Integrated description of protein dynamics from room-temperature X-ray crystallography and NMR. Proceedings of the National Academy of Sciences, 111(4), pp.E445-E454.
Type: Journal-article
Authors: Sanchari Bhattacharya, Tzu-Chiao Chao, Nethmi Ariyasinghe, Yvette Ruiz, Douglas Lake, Robert Ros, Alexandra Ros
Citation: Bhattacharya, S. et al., 2014. Selective trapping of single mammalian breast cancer cells by insulator-based dielectrophoresis. Analytical and Bioanalytical Chemistry, 406(7), pp.1855-1865.
Type: Journal-article
Authors: P. T. Lang, J. M. Holton, J. S. Fraser, T. Alber
Citation: Lang, P.T. et al., 2013. Protein structural ensembles are revealed by redefining X-ray electron density noise. Proceedings of the National Academy of Sciences, 111(1), pp.237-242.
Type: Journal-article
Authors: W. Liu, D. Wacker, C. Gati, G. W. Han, D. James, D. Wang, G. Nelson, U. Weierstall, V. Katritch, A. Barty, N. A. Zatsepin, D. Li, M. Messerschmidt, S. Boutet, G. J. Williams, J. E. Koglin, M. M. Seibert, C. Wang, S. T. A. Shah, S. Basu, R. Fromme, C. Kupitz, K. N. Rendek, I. Grotjohann, P. Fromme, R. A. Kirian, K. R. Beyerlein, T. A. White, H. N. Chapman, M. Caffrey, J. C. H. Spence, R. C. Stevens, V. Cherezov
Citation: Liu, W. et al., 2013. Serial Femtosecond Crystallography of G Protein-Coupled Receptors. Science, 342(6165), pp.1521-1524.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Linda C. Johansson, David Arnlund, Gergely Katona, Thomas A. White, Anton Barty, Daniel P. DePonte, Robert L. Shoeman, Cecilia Wickstrand, Amit Sharma, Garth J. Williams, Andrew Aquila, Michael J. Bogan, Carl Caleman, Jan Davidsson, R Bruce Doak, Matthias Frank, Raimund Fromme, Lorenzo Galli, Ingo Grotjohann, Mark S. Hunter, Stephan Kassemeyer, Richard A. Kirian, Christopher Kupitz, Mengning Liang, Lukas Lomb, Erik Malmerberg, Andrew V. Martin, Marc Messerschmidt, Karol Nass, Lars Redecke, M Marvin Seibert, Jennie Sjöhamn, Jan Steinbrener, Francesco Stellato, Dingjie Wang, Weixaio Y. Wahlgren, Uwe Weierstall, Sebastian Westenhoff, Nadia A. Zatsepin, Sébastien Boutet, John C.H. Spence, Ilme Schlichting, Henry N. Chapman, Petra Fromme, Richard Neutze
Citation: Johansson, L.C. et al., 2013. Structure of a photosynthetic reaction centre determined by serial femtosecond crystallography. Nat Comms, 4.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: E. C. Mattson, J. E. Johns, K. Pande, R. A. Bosch, S. Cui, M. Gajdardziska-Josifovska, M. Weinert, J. H. Chen, M. C. Hersam, C. J. Hirschmugl
Citation: Mattson, E.C. et al., 2014. Vibrational Excitations and Low-Energy Electronic Structure of Epoxide-Decorated Graphene. The Journal of Physical Chemistry Letters, 5(1), pp.212-219.
Type: Journal-article
Authors: A. T. Vaidya, D. Top, C. C. Manahan, J. M. Tokuda, S. Zhang, L. Pollack, M. W. Young, B. R. Crane
Citation: Vaidya, A.T. et al., 2013. Flavin reduction activates Drosophila cryptochrome. Proceedings of the National Academy of Sciences, 110(51), pp.20455-20460.
Type: Journal-article
Authors: Jeremy R. Lohman, Ming Ma, Marianne E. Cuff, Lance Bigelow, Jessica Bearden, Gyorgy Babnigg, Andrzej Joachimiak, George N. Phillips, Ben Shen
Citation: Lohman, J.R. et al., 2013. The crystal structure of BlmI as a model for nonribosomal peptide synthetase peptidyl carrier proteins. Proteins: Structure, Function, and Bioinformatics, 82(7), pp.1210-1218.
Type: Journal-article
Authors: Thomas R. M. Barends, Lutz Foucar, Sabine Botha, R. Bruce Doak, Robert L. Shoeman, Karol Nass, Jason E. Koglin, Garth J. Williams, Sébastien Boutet, Marc Messerschmidt, Ilme Schlichting
Citation: Barends, T.R.M. et al., 2013. De novo protein crystal structure determination from X-ray free-electron laser data. Nature, 505(7482), pp.244-247.
Type: Journal-article
Authors: Kristin A. Sutton, Paul J. Black, Kermit R. Mercer, Elspeth F. Garman, Robin L. Owen, Edward H. Snell, William A. Bernhard
Citation: Sutton, K.A. et al., 2013. Insights into the mechanism of X-ray-induced disulfide-bond cleavage in lysozyme crystals based on EPR, optical absorption and X-ray diffraction studies. Acta Crystallogr D, 69(12), pp.2381-2394.
Type: Journal-article
Authors: Marius Schmidt, Vukica Srajer, Robert Henning, Hyotcherl Ihee, Namrta Purwar, Jason Tenboer, Shailesh Tripathi
Citation: Schmidt, M. et al., 2013. Protein energy landscapes determined by five-dimensional crystallography. Acta Crystallogr D, 69(12), pp.2534-2542.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: Hyung Joo Park, N. Duane Loh, Raymond G. Sierra, Christina Y. Hampton, Dmitri Starodub, Andrew V. Martin, Anton Barty, Andrew Aquila, Joachim Schulz, Jan Steinbrener, Robert L. Shoeman, Lukas Lomb, Stephan Kassemeyer, Christoph Bostedt, John Bozek, Sascha W. Epp, Benjamin Erk, Robert Hartmann, Daniel Rolles, Artem Rudenko, Benedikt Rudek, Lutz Foucar, Nils Kimmel, Georg Weidenspointner, Guenter Hauser, Peter Holl, Emanuele Pedersoli, Mengning Liang, Mark S. Hunter, Lars Gumprecht, Nicola Coppola, Cornelia Wunderer, Heinz Graafsma, Filipe R.N.C. Maia, Tomas Ekeberg, Max Hantke, Holger Fleckenstein, Helmut Hirsemann, Karol Nass, Herbert J. Tobias, George R. Farquar, W. Henry Benner, Stefan Hau-Riege, Christian Reich, Andreas Hartmann, Heike Soltau, Stefano Marchesini, Sasa Bajt, Miriam Barthelmess, Lothar Strueder, Joachim Ullrich, Philip Bucksbaum, Matthias Frank, Ilme Schlichting, Henry N. Chapman, Michael J. Bogan, Veit Elser
Citation: Park, H.J. et al., 2013. Toward unsupervised single-shot diffractive imaging of heterogeneous particles using X-ray free-electron lasers. Optics Express, 21(23), p.28729.
Type: Journal-article
Authors: J.-U. Kreft, C. M. Plugge, V. Grimm, C. Prats, J. H. J. Leveau, T. Banitz, S. Baines, J. Clark, A. Ros, I. Klapper, C. J. Topping, A. J. Field, A. Schuler, E. Litchman, F. L. Hellweger
Citation: Kreft, J.-U. et al., 2013. Mighty small: Observing and modeling individual microbes becomes big science. Proceedings of the National Academy of Sciences, 110(45), pp.18027-18028.
Type: Journal-article
Authors: Bahige G. Abdallah, Christopher Kupitz, Petra Fromme, Alexandra Ros
Citation: Abdallah, B.G. et al., 2013. Crystallization of the Large Membrane Protein Complex Photosystem I in a Microfluidic Channel. ACS Nano, 7(12), pp.10534-10543.
Type: Journal-article
Authors: B.G. Abdallah, A. Ros
Citation: Abdallah, B.G. & Ros, A., 2013. Surface coatings for microfluidic-based biomedical devices. Microfluidic Devices for Biomedical Applications, pp.63-99.
Type: Book-chapter
Authors: James D. Zook, Trivikram R. Molugu, Neil E. Jacobsen, Guangxin Lin, Jürgen Soll, Brian R. Cherry, Michael F. Brown, Petra Fromme
Citation: Zook, J.D. et al., 2013. High-Resolution NMR Reveals Secondary Structure and Folding of Amino Acid Transporter from Outer Chloroplast Membrane O. Y. Dmitriev, ed. PLoS ONE, 8(10), p.e78116.
Type: Journal-article
Authors: Lin Gan, Tzu-Chiao Chao, Fernanda Camacho-Alanis, Alexandra Ros
Citation: Gan, L. et al., 2013. Six-Helix Bundle and Triangle DNA Origami Insulator-Based Dielectrophoresis. Analytical Chemistry, 85(23), pp.11427-11434.
Type: Journal-article
Authors: David A. Bushnell, Roger D. Kornberg
Citation: Bushnell, D.A. & Kornberg, R.D., 2013. Eukaryotic RNA Polymerase II. Nucleic Acids and Molecular Biology, pp.277-287.
Type: Book-chapter
Authors: W. Christenson, I. Yermolenko, B. Plochberger, F. Camacho-Alanis, A. Ros, T.P. Ugarova, R. Ros
Citation: Christenson, W. et al., 2014. Combined single cell AFM manipulation and TIRFM for probing the molecular stability of multilayer fibrinogen matrices. Ultramicroscopy, 136, pp.211-215.
Type: Journal-article
Authors: Haiguang Liu, Nadia A. Zatsepin, John C. H. Spence
Citation: Liu, H., Zatsepin, N.A. & Spence, J.C.H., 2013. Ab-initio phasing using nanocrystal shape transforms with incomplete unit cells . IUCrJ, 1(1), pp.19-27.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors: K. Murakami, H. Elmlund, N. Kalisman, D. A. Bushnell, C. M. Adams, M. Azubel, D. Elmlund, Y. Levi-Kalisman, X. Liu, B. J. Gibbons, M. Levitt, R. D. Kornberg
Citation: Murakami, K. et al., 2013. Architecture of an RNA Polymerase II Transcription Pre-Initiation Complex. Science, 342(6159), pp.1238724-1238724.
Type: Journal-article
Authors: Ali Dashti, Ivan Komarov, Roshan M. D’Souza
Citation: Dashti, A., Komarov, I. & D'Souza, R.M., 2013. Efficient Computation of k-Nearest Neighbour Graphs for Large High-Dimensional Data Sets on GPU Clusters A. Gursoy, ed. PLoS ONE, 8(9), p.e74113.
Type: Journal-article
Authors: Namrta Purwar, Jason Tenboer, Shailesh Tripathi, Marius Schmidt
Citation: Purwar, N. et al., 2013. Spectroscopic Studies of Model Photo-Receptors: Validation of a Nanosecond Time-Resolved Micro-Spectrophotometer Design Using Photoactive Yellow Protein and α-Phycoerythrocyanin. International Journal of Molecular Sciences, 14(9), pp.18881-18898.
Type: Journal-article
Authors: Bahige G. Abdallah, Tzu-Chiao Chao, Christopher Kupitz, Petra Fromme, Alexandra Ros
Citation: Abdallah, B.G. et al., 2013. Dielectrophoretic Sorting of Membrane Protein Nanocrystals. ACS Nano, 7(10), pp.9129-9137.
Type: Journal-article
Authors: Henry van den Bedem, Gira Bhabha, Kun Yang, Peter E Wright, James S Fraser
Citation: Van den Bedem, H. et al., 2013. Automated identification of functional dynamic contact networks from X-ray crystallography. Nature Methods, 10(9), pp.896-902.
Type: Journal-article
Authors: Nan Jiang, John C.H. Spence
Citation: Jiang, N. & Spence, J.C.H., 2013. Valence electron energy-loss spectroscopy study of ZrSiO4 and ZrO2. Ultramicroscopy, 134, pp.68-76.
Type: Journal-article
Authors: H.-C. Poon, P. Schwander, M. Uddin, D. K. Saldin
Citation: Poon, H.-C. et al., 2013. Fiber Diffraction without Fibers. Physical Review Letters, 110(26).
Type: Journal-article
Authors: Xiang Chen, John C. H. Spence
Citation: Chen, X. & Spence, J.C.H., 2013. Casimir torque between birefringent plates with metamaterials. physica status solidi (a), p.n/a-n/a.
Type: Journal-article
Authors: A.V. Martin, A.J. Morgan, T. Ekeberg, N.D. Loh, F.R.N.C. Maia, F. Wang, J.C.H. Spence, H.N. Chapman
Citation: Martin, A.V. et al., 2013. The extraction of single-particle diffraction patterns from a multiple-particle diffraction pattern. Optics Express, 21(13), p.15102.
Type: Journal-article
Authors: Thomas A. White, Anton Barty, Francesco Stellato, James M. Holton, Richard A. Kirian, Nadia A. Zatsepin, Henry N. Chapman
Citation: White, T.A. et al., 2013. Crystallographic data processing for free-electron laser sources. Acta Crystallographica Section D Biological Crystallography, 69(7), pp.1231-1240.
Type: Journal-article
Authors: J. C. H. Spence, J. M. Zuo
Citation: Spence, J.C.H. & Zuo, J.M., 1992. A Brief History of Electron Microdiffraction. Electron Microdiffraction, pp.1-5.
Type: Book-chapter
Authors: Christopher M. Bianchetti, Phillip Brumm, Robert W. Smith, Kevin Dyer, Greg L. Hura, Thomas J. Rutkoski, George N. Phillips
Citation: Bianchetti, C.M. et al., 2013. Structure, Dynamics, and Specificity of Endoglucanase D from Clostridium cellulovorans. Journal of Molecular Biology, 425(22), pp.4267-4285.
Type: Journal-article
Authors: J. N. Clark, L. Beitra, G. Xiong, A. Higginbotham, D. M. Fritz, H. T. Lemke, D. Zhu, M. Chollet, G. J. Williams, M. Messerschmidt, B. Abbey, R. J. Harder, A. M. Korsunsky, J. S. Wark, I. K. Robinson
Citation: Clark, J.N. et al., 2013. Ultrafast Three-Dimensional Imaging of Lattice Dynamics in Individual Gold Nanocrystals. Science, 341(6141), pp.56-59.
Type: Journal-article
Authors: H.-C. Poon, M. Schmidt, D. K. Saldin
Citation: Poon, H.-C., Schmidt, M. & Saldin, D.K., 2013. Extraction of Fast Changes in the Structure of a Disordered Ensemble of Photoexcited Biomolecules. Advances in Condensed Matter Physics, 2013, pp.1-5.
Type: Journal-article
Authors: N. Duane Loh, Dmitri Starodub, Lukas Lomb, Christina Y. Hampton, Andrew V. Martin, Raymond G. Sierra, Anton Barty, Andrew Aquila, Joachim Schulz, Jan Steinbrener, Robert L. Shoeman, Stephan Kassemeyer, Christoph Bostedt, John Bozek, Sascha W. Epp, Benjamin Erk, Robert Hartmann, Daniel Rolles, Artem Rudenko, Benedikt Rudek, Lutz Foucar, Nils Kimmel, Georg Weidenspointner, Guenter Hauser, Peter Holl, Emanuele Pedersoli, Mengning Liang, Mark S. Hunter, Lars Gumprecht, Nicola Coppola, Cornelia Wunderer, Heinz Graafsma, Filipe R.N.C. Maia, Tomas Ekeberg, Max Hantke, Holger Fleckenstein, Helmut Hirsemann, Karol Nass, Thomas A. White, Herbert J. Tobias, George R. Farquar, W. Henry Benner, Stefan Hau-Riege, Christian Reich, Andreas Hartmann, Heike Soltau, Stefano Marchesini, Sasa Bajt, Miriam Barthelmess, Lothar Strueder, Joachim Ullrich, Philip Bucksbaum, Matthias Frank, Ilme Schlichting, Henry N. Chapman, Michael J. Bogan
Citation: Loh, N.D. et al., 2013. Sensing the wavefront of x-ray free-electron lasers using aerosol spheres. Optics Express, 21(10), p.12385.
Type: Journal-article
Authors: Marius Schmidt
Citation: Schmidt, M., 2013. Mix and Inject: Reaction Initiation by Diffusion for Time-Resolved Macromolecular Crystallography. Advances in Condensed Matter Physics, 2013, pp.1-10.
Type: Journal-article
Authors: Haiguang Liu, Billy K. Poon, Dilano K. Saldin, John C. H. Spence, Peter H. Zwart
Citation: Liu, H. et al., 2013. Three-dimensional single-particle imaging using angular correlations from X-ray laser data. Acta Crystallographica Section A Foundations of Crystallography, 69(4), pp.365-373.
Type: Journal-article
Authors: Eric C. Mattson, Kanupriya Pande, Miriam Unger, Shumao Cui, Ganhua Lu, M. Gajdardziska-Josifovska, Michael Weinert, Junhong Chen, Carol J. Hirschmugl
Citation: Mattson, E.C. et al., 2013. Exploring Adsorption and Reactivity of NH3on Reduced Graphene Oxide. The Journal of Physical Chemistry C, 117(20), pp.10698-10707.
Type: Journal-article
Authors: David W. Smith, Mi Ra Han, Joon Sung Park, Kyung Rok Kim, Taeho Yeom, Ji Yeon Lee, Do Jin Kim, Craig A. Bingman, Hyun-Jung Kim, Kyubong Jo, Byung Woo Han, George N. Phillips
Citation: Smith, D.W. et al., 2013. Crystal structure of the protein fromArabidopsis thalianagene At5g06450, a putative DnaQ-like exonuclease domain-containing protein with homohexameric assembly. Proteins: Structure, Function, and Bioinformatics, 81(9), pp.1669-1675.
Type: Journal-article
Authors: Atilla Sit, Julie C Mitchell, George N Phillips, Stephen J Wright
Citation: Sit, A. et al., 2013. An Extension of 3D Zernike Moments for Shape Description and Retrieval of Maps Defined in Rectangular Solids. Molecular Based Mathematical Biology, 1.
Type: Journal-article
Authors: Steve P. Meisburger, Julie L. Sutton, Huimin Chen, Suzette A. Pabit, Serdal Kirmizialtin, Ron Elber, Lois Pollack
Citation: Meisburger, S.P. et al., 2013. Polyelectrolyte properties of single stranded DNA measured using SAXS and single molecule FRET: Beyond the wormlike chain model. Biopolymers, p.n/a-n/a.
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