Publications by BioXFEL Researchers Since Start of BioXFEL Grant
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Acknowledges BioXFEL NSF-STC
Citation: Otten, R. et al., 2020. How directed evolution reshapes the energy landscape in an enzyme to boost catalysis. Science, p.eabd3623.
Type: Journal-article
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Citation: Li, H. et al., 2020. Diffraction data from aerosolized Coliphage PR772 virus particles imaged with the Linac Coherent Light Source. Scientific Data, 7(1).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Jin, S. et al., 2020. Molecular-replacement phasing using predicted protein structures from AWSEM-Suite. IUCrJ, 7(6), pp.1168-1178.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Assalauova, D. et al., 2020. An advanced workflow for single-particle imaging with the limited data at an X-ray free-electron laser. IUCrJ, 7(6), pp.1102-1113.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Lee, M.-Y. et al., 2020. Harnessing the power of an X-ray laser for serial crystallography of membrane proteins crystallized in lipidic cubic phase. IUCrJ, 7(6), pp.976-984.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Shelby, M.L. et al., 2020. Crystallization of ApoA1 and ApoE4 Nanolipoprotein Particles and Initial XFEL-Based Structural Studies. Crystals, 10(10), p.886.
Type: Journal-article
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Citation: Carrillo, M. et al., 2020. High-resolution Crystal Structures of Transient Intermediates in the Phytochrome Photocycle.
Type: Posted-content
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Citation: Echelmeier, A. et al., 2020. Segmented flow generator for serial crystallography at the European X-ray free electron laser. Nature Communications, 11(1).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Durdagi, S. et al., 2020. Near-Physiological-Temperature Serial Femtosecond X-ray Crystallography Reveals Novel Conformations of SARS-CoV-2 Main Protease Active Site for Improved Drug Repurposing.
Type: Posted-content
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Citation: Benjamín-Rivera, J.A. et al., 2020. Exploring Serum Transferrin Regulation of Nonferric Metal Therapeutic Function and Toxicity. Inorganics, 8(9), p.48.
Type: Journal-article
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Citation: Chen, Y.-L. & Pollack, L., 2020. Machine learning deciphers structural features of RNA duplexes measured with solution X-ray scattering. IUCrJ, 7(5).
Type: Journal-article
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Citation: Tang, Y. et al., 2020. Construction of gateway-compatible baculovirus expression vectors for high-throughput protein expression and in vivo microcrystal screening. Scientific Reports, 10(1).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Donatelli, J.J. & Spence, J.C.H., 2020. Inversion of Many-Beam Bragg Intensities for Phasing by Iterated Projections: Removal of Multiple Scattering Artifacts from Diffraction Data. Physical Review Letters, 125(6).
Type: Journal-article
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Citation: Pandey, S., Poudyal, I. & Malla, T.N., 2020. Pump-Probe Time-Resolved Serial Femtosecond Crystallography at X-Ray Free Electron Lasers. Crystals, 10(7), p.628.
Type: Journal-article
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Citation: Nazari, R. et al., 2020. 3D printing of gas-dynamic virtual nozzles and optical characterization of high-speed microjets. Optics Express, 28(15), p.21749.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Kim, Y. & Ourmazd, A., 1990. Diffusion in multilayers, studied by quantitative chemical mapping at the atomic level. Proceedings, annual meeting, Electron Microscopy Society of America, 48(4), pp.354-355.
Type: Journal-article
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Citation: Thomas, C.S. et al., 2020. Pyridine-2,6-Dithiocarboxylic Acid and Its Metal Complexes: New Inhibitors of New Delhi Metallo β-Lactamase-1. Marine Drugs, 18(6), p.295.
Type: Journal-article
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Citation: Rabbani, M.T., Sonker, M. & Ros, A., 2020. Carbon nanotube dielectrophoresis: Theory and applications. ELECTROPHORESIS.
Type: Journal-article
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Citation: Sobolev, E. et al., 2020. Megahertz single-particle imaging at the European XFEL. Communications Physics, 3(1).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Wu, W. et al., 2020. Targeted DNA sequencing analysis to reveal genetic diversity and androgen-receptor alteration in advanced EGFR mutant lung adenocarcinoma. Journal of Clinical Oncology, 38(15_suppl), pp.9526-9526.
Type: Journal-article
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Citation: Rabbani, M.T., Schmidt, C.F. & Ros, A., 2020. Length-Selective Dielectrophoretic Manipulation of Single-Walled Carbon Nanotubes. Analytical Chemistry.
Type: Journal-article
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Citation: Ourmazd, A., 2020. Science in the age of machine learning. Nature Reviews Physics.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Campbell, I.J. et al., 2020. Prochlorococcus phage ferredoxin: Structural characterization and electron transfer to cyanobacterial sulfite reductases. Journal of Biological Chemistry, p.jbc.RA120.013501.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Sato, T. et al., 2020. Femtosecond timing synchronization at megahertz repetition rates for an x-ray free-electron laser. Optica, 7(6), p.716.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Kirian, R.A. & Chapman, H.N., 2020. Imaging of Objects by Coherent Diffraction of X-Ray Free-Electron Laser Pulses. Synchrotron Light Sources and Free-Electron Lasers, pp.1337-1397.
Type: Book-chapter
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Citation: Claesson, E. et al., 2020. The primary structural photoresponse of phytochrome proteins captured by a femtosecond X-ray laser. eLife, 9.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Maji, S. et al., 2020. Propagation of Conformational Coordinates Across Angular Space in Mapping the Continuum of States from Cryo-EM Data by Manifold Embedding. Journal of Chemical Information and Modeling.
Type: Journal-article
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Citation: Fung, R. et al., 2019. Using Machine Learning to Achieve Accurate Estimates of Fetal Gestational Age and Personalized Predictions of Fetal Growth. SSRN Electronic Journal.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Poudyal, I., Schmidt, M. & Schwander, P., 2020. Single-particle imaging by x-ray free-electron lasers--How many snapshots are needed? Structural Dynamics, 7(2), p.024102.
Type: Journal-article
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Citation: Zook, J. et al., 2020. XFEL and NMR Structures of Francisella Lipoprotein Reveal Conformational Space of Drug Target against Tularemia. Structure.
Type: Journal-article
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Citation: Marchany-Rivera, D. et al., 2020. Lucina pectinata oxyhemoglobin (II-III) heterodimer pH susceptibility. Journal of Inorganic Biochemistry, 207, p.111055.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Wolff, A.M. et al., 2020. Comparing serial X-ray crystallography and microcrystal electron diffraction (MicroED) as methods for routine structure determination from small macromolecular crystals. IUCrJ, 7(2), pp.306-323.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Huber, T.D. et al., 2020. Methionine Adenosyltransferase Engineering to Enable Bioorthogonal Platforms for AdoMet-Utilizing Enzymes. ACS Chemical Biology, 15(3), pp.695-705.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Spence, J.C.H., 2020. Serial Crystallography: Preface. Crystals, 10(2), p.135.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Schmidt, M., 2020. Reaction Initiation in Enzyme Crystals by Diffusion of Substrate. Crystals, 10(2), p.116.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Stein, R.M. et al., 2020. Virtual discovery of melatonin receptor ligands to modulate circadian rhythms. Nature.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Chen, Y.-L. & Pollack, L., 2020. Convolutional Neural Networks Bridge Molecular Models and Solution X-ray Scattering Experiments. Biophysical Journal, 118(3), p.301a.
Type: Poster
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Citation: Plumridge, A. & Pollack, L., 2020. Discovering Design Principles to Re-Engineer Functional RNA Elements. Biophysical Journal, 118(3), p.70a.
Type: Poster
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Citation: Lin, D.R., Pabit, S.A. & Pollack, L., 2020. Probing Mg2+-Mediated RNA-RNA Interactions in the Presence of Metabolites. Biophysical Journal, 118(3), p.69a.
Type: Poster
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Citation: Chen, Y.-L. & Pollack, L., 2020. Quantitative Analysis of Salt-Induced RNA Duplex Variations by Wide-Angle X-ray Scattering (WAXS). Biophysical Journal, 118(3), p.68a.
Type: Poster
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Citation: Mauney, A. & Pollack, L., 2020. DNA Sequence and Histone Core Composition Determine the Unwrapping Pathways in Nucleosomes. Biophysical Journal, 118(3), p.489a.
Type: Poster
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Citation: Pabit, S.A. et al., 2020. Evidence that Primary Microrna Bends in the Presence of DGCR8 Seen using Both Saxs and FRET Measurements. Biophysical Journal, 118(3), p.222a.
Type: Poster
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Citation: DeMirci, H. et al., 2020. Structural adaptation of oxygen tolerance in 4-hydroxybutyrl-CoA dehydratase, a key enzyme of archaeal carbon fixation.
Type: Posted-content
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Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Nass, K. et al., 2020. In cellulo crystallization of Trypanosoma brucei IMP dehydrogenase enables the identification of genuine co-factors. Nature Communications, 11(1).
Type: Journal-article
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Citation: Stojković, V. et al., 2020. Assessment of the nucleotide modifications in the high-resolution cryo-electron microscopy structure of the Escherichia coli 50S subunit. Nucleic Acids Research.
Type: Journal-article
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Differences in the chitinolytic activity of mammalian chitinases on soluble and insoluble substrates
Citation: Barad, B.A. et al., 2020. Differences in the chitinolytic activity of mammalian chitinases on soluble and insoluble substrates. Protein Science.
Type: Journal-article
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Citation: Snell, E.H. et al., 1999. Structural knowledge or X-ray damage? Dose-dependent case studies on xylose isomerase revealing structural perturbations. Acta Crystallographica Section A Foundations and Advances, 75(a1), pp.a232-a232.
Type: Poster
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Welty, R. et al., 2019. Ribosomal protein L11 selectively stabilizes a tertiary structure of the GTPase Center rRNA domain. Journal of Molecular Biology.
Type: Journal-article
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Citation: Burgie, E.S. et al., 2019. Photoreversible interconversion of a phytochrome photosensory module in the crystalline state. Proceedings of the National Academy of Sciences, 117(1), pp.300-307.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Wych, D.C. et al., 2019. Liquid-like and rigid-body motions in molecular-dynamics simulations of a crystalline protein. Structural Dynamics, 6(6), p.064704.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Ayyer, K. et al., 2019. Low-signal limit of X-ray single particle diffractive imaging. Optics Express, 27(26), p.37816.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Gusach, A. et al., 2019. Structural basis of ligand selectivity and disease mutations in cysteinyl leukotriene receptors. Nature Communications, 10(1).
Type: Journal-article
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Citation: Plumridge, A., Andresen, K. & Pollack, L., 2019. Visualizing Disordered Single-Stranded RNA: Connecting Sequence, Structure, and Electrostatics. Journal of the American Chemical Society.
Type: Journal-article
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Citation: Grime, G.W. et al., 2019. High-Throughput PIXE as an Essential Quantitative Assay for Accurate Metalloprotein Structural Analysis: Development and Application. Journal of the American Chemical Society.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Claff, T. et al., 2019. Elucidating the active δ-opioid receptor crystal structure with peptide and small-molecule agonists. Science Advances, 5(11), p.eaax9115.
Type: Journal-article
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Citation: Glasgow, A.A. et al., 2019. Computational design of a modular protein sense-response system. Science, 366(6468), pp.1024-1028.
Type: Journal-article
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Citation: Shelby, M.L. et al., 2020. A fixed-target platform for serial femtosecond crystallography in a hydrated environment. IUCrJ, 7(1), pp.30-41.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Pandey, S. et al., 2019. Time-resolved serial femtosecond crystallography at the European XFEL. Nature Methods.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Stauch, B., Johansson, L.C. & Cherezov, V., 2019. Structural Insights into Melatonin Receptors. The FEBS Journal.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Gisriel, C. et al., 2019. Membrane protein megahertz crystallography at the European XFEL. Nature Communications, 10(1).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Ishchenko, A. et al., 2019. Toward G protein-coupled receptor structure-based drug design using X-ray lasers. IUCrJ, 6(6), pp.1106-1119.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Chen, Y.-L. & Pollack, L., 2019. Salt Dependence of A-Form RNA Duplexes: Structures and Implications. The Journal of Physical Chemistry B.
Type: Journal-article
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Citation: Giannakis, D. et al., 2019. Correction to: Spatiotemporal Pattern Extraction by Spectral Analysis of Vector-Valued Observables. Journal of Nonlinear Science.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Luginina, A. et al., 2019. Structure-based mechanism of cysteinyl leukotriene receptor inhibition by antiasthmatic drugs. Science Advances, 5(10), p.eaax2518.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Thompson, M.C. et al., 2019. Temperature-jump solution X-ray scattering reveals distinct motions in a dynamic enzyme. Nature Chemistry, 11(11), pp.1058-1066.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Echelmeier, A. et al., 2019. 3D printed droplet generation devices for serial femtosecond crystallography enabled by surface coating. Journal of Applied Crystallography, 52(5), pp.997-1008.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Chen, J.P.J. et al., 2019. Reconstruction of Objects from Their Averaged Finite Crystal Diffraction Intensity. 2019 IEEE International Conference on Image Processing (ICIP).
Type: Proceedings-article
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Citation: Drell, P. et al., 2018. A Remarkable Return On Investment In Fundamental Research: 40 Years of Basic Energy Sciences at the Department of Energy.
Type: Report
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Citation: Kim, D. et al., 2019. Electric Triggering for Enhanced Control of Droplet Generation. Analytical Chemistry, 91(15), pp.9792-9799.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Echelmeier, A., Sonker, M. & Ros, A., 2019. Microfluidic sample delivery for serial crystallography using XFELs. Analytical and Bioanalytical Chemistry, 411(25), pp.6535-6547.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Taberman, H. et al., 2019. Structural knowledge or X-ray damage? A case study on xylose isomerase illustrating both. Journal of Synchrotron Radiation, 26(4), pp.931-944.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Brändén, G. et al., 2019. Coherent diffractive imaging of microtubules using an X-ray laser. Nature Communications, 10(1).
Type: Journal-article
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Citation: Mehrjoo, M. et al., 2019. Spatial characterization of FLASH2 pulses: current status and future plan (Conference Presentation) T. Tschentscher et al., eds. X-Ray Free-Electron Lasers: Advances in Source Development and Instrumentation V.
Type: Proceedings-article
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Citation: Giannakis, D. et al., 2019. Spatiotemporal Pattern Extraction by Spectral Analysis of Vector-Valued Observables. Journal of Nonlinear Science.
Type: Journal-article
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Citation: Bayani, J. et al., 2019. Abstract P6-19-01: Evaluation of multiple transcriptomic gene risk signatures in male breast cancer. Poster Session Abstracts.
Type: Proceedings-article
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Citation: Calvey, G.D., Katz, A.M. & Pollack, L., 2019. Microfluidic Mixing Injector Holder Enables Routine Structural Enzymology Measurements with Mix-and-Inject Serial Crystallography Using X-ray Free Electron Lasers. Analytical Chemistry.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Stauch, B. et al., 2019. Publisher Correction: Structural basis of ligand recognition at the human MT1 melatonin receptor. Nature, 569(7756), pp.E6-E6.
Type: Journal-article
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Citation: Gutierrez, M.G. et al., 2019. The lipid phase preference of the adenosine A2A receptor depends on its ligand binding state. Chemical Communications, 55(40), pp.5724-5727.
Type: Journal-article
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Citation: Stauch, B. et al., 2019. Structural basis of ligand recognition at the human MT1 melatonin receptor. Nature.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Johansson, L.C. et al., 2019. XFEL structures of the human MT2 melatonin receptor reveal the basis of subtype selectivity. Nature.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Mancuso, A.P. et al., 2019. The Single Particles, Clusters and Biomolecules and Serial Femtosecond Crystallography instrument of the European XFEL: initial installation. Journal of Synchrotron Radiation, 26(3), pp.660-676.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Martin-Garcia, J.M. et al., 2019. High-viscosity injector-based pink-beam serial crystallography of microcrystals at a synchrotron radiation source. IUCrJ, 6(3), pp.412-425.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Niessen, K.A. et al., 2019. Protein and RNA dynamical fingerprinting. Nature Communications, 10(1).
Type: Journal-article
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Citation: Shi, Y. et al., 2019. Evaluation of the performance of classification algorithms for XFEL single-particle imaging data.
Type: Component
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Citation: Shi, Y. et al., 2019. Evaluation of the performance of classification algorithms for XFEL single-particle imaging data. IUCrJ, 6(2), pp.331-340.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Shi, Y. et al., 2019. Evaluation of the performance of classification algorithms for XFEL single-particle imaging data.
Type: Component
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Citation: Chen, J.P.J. et al., 2019. Shape transform phasing of edgy nanocrystals. Acta Crystallographica Section A Foundations and Advances, 75(2), pp.239-259.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Plumridge, A. & Pollack, L., 2019. Following Folding Pathways of Common Riboswitch Motifs with Time-Resolved Single-Molecule FRET. Biophysical Journal, 116(3), p.355a.
Type: Poster
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Citation: Pabit, S.A. et al., 2019. Time-Resolved Contrast Variation SAXS for Studying RNA-Protein Interactions. Biophysical Journal, 116(3), p.319a-320a.
Type: Poster
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Citation: Mauney, A. et al., 2019. DNA Sequence and Histone Core Composition Control the Unwrapping of DNA from Nucleosome Core Particles. Biophysical Journal, 116(3), p.214a.
Type: Poster
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Citation: Sonker, M. et al., 2019. Separation Phenomena in Tailored Micro- and Nanofluidic Environments. Annual Review of Analytical Chemistry, 12(1).
Type: Journal-article
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Citation: DasGupta, M. et al., 2019. Cysteine modification can gate non-equilibrium conformational dynamics during enzyme catalysis: Supplemental Information.
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Hu, S. et al., 2019. Biophysical Characterization of a Disabled Double Mutant of Soybean Lipoxygenase: The "Undoing" of Precise Substrate Positioning Relative to Metal Cofactor and an Identified Dynamical Network. Journal of the American Chemical Society, 141(4), pp.1555-1567.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Ananyev, G. et al., 2019. The Catalytic Cycle of Water Oxidation in Crystallized Photosystem II Complexes: Performance and Requirements for Formation of Intermediates. ACS Catalysis, pp.1396-1407.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Du, S. et al., 2019. SENP1-mediated deSUMOylation of USP28 regulated HIF-1α accumulation and activation during hypoxia response. Cancer Cell International, 19(1).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Kirian, R.A., Chen, J.P.J. & Spence, J.C.H., 2018. Phasing Serial Crystallography Data. X-ray Free Electron Lasers, pp.235-252.
Type: Book-chapter
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Stauch, B. et al., 2018. Advances in Structure Determination of G Protein-Coupled Receptors by SFX. X-ray Free Electron Lasers, pp.301-329.
Type: Book-chapter
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Citation: Coe, J. & Ros, A., 2018. Small Is Beautiful: Growth and Detection of Nanocrystals. X-ray Free Electron Lasers, pp.59-85.
Type: Book-chapter
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Citation: Boutet, S., Fromme, P. & Hunter, M.S. eds., 2018. X-ray Free Electron Lasers.
Type: Book
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Citation: Morgan, A.J. et al., 2019. Ab initio phasing of the diffraction of crystals with translational disorder. Acta Crystallographica Section A Foundations and Advances, 75(1), pp.25-40.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Jensen, S.C. et al., 2019. X-ray Emission Spectroscopy at X-ray Free Electron Lasers: Limits to Observation of the Classical Spectroscopic Response for Electronic Structure Analysis. The Journal of Physical Chemistry Letters, pp.441-446.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Li, C. et al., 2019. SPIND: a reference-based auto-indexing algorithm for sparse serial crystallography data. IUCrJ, 6(1), pp.72-84.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Audet, M. et al., 2018. Crystal structure of misoprostol bound to the labor inducer prostaglandin E2 receptor. Nature Chemical Biology, 15(1), pp.11-17.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Kim, D., Sonker, M. & Ros, A., 2018. Dielectrophoresis: From molecular to micrometer scale analytes. Analytical Chemistry.
Type: Journal-article
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Citation: Carmona-Negrón, J.A. et al., 2019. Synthesis, structure, docking and cytotoxic studies of ferrocene-hormone conjugates for hormone-dependent breast cancer application. Dalton Transactions.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Conformations of an RNA Helix-Junction-Helix Construct revealed by SAXS Refinement of MD Simulations
Citation: Chen, Y.-L. et al., 2018. Conformations of an RNA Helix-Junction-Helix Construct revealed by SAXS Refinement of MD Simulations. Biophysical Journal.
Type: Journal-article
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Citation: Thompson, M.C. et al., 2018. Temperature-Jump Solution X-ray Scattering Reveals Distinct Motions in a Dynamic Enzyme:
Type: Posted-content
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Van Zundert, G. et al., 2018. qFit-ligand reveals widespread conformational heterogeneity of drug-like molecules in X-ray electron density maps. Journal of Medicinal Chemistry.
Type: Journal-article
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Citation: Casadei, C.M. et al., 2019. Structure-factor amplitude reconstruction from serial femtosecond crystallography of two-dimensional membrane-protein crystals. IUCrJ, 6(1).
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Chen, Y.-L., Sutton, J.L. & Pollack, L., 2018. How the Conformations of an Internal Junction Contribute to Fold an RNA Domain. The Journal of Physical Chemistry B.
Type: Journal-article
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Citation: Pande, K. et al., 2018. Free-electron laser data for multiple-particle fluctuation scattering analysis. Scientific Data, 5, p.180201.
Type: Journal-article
Funding: NSF-STC Biology with X-ray Lasers (NSF-1231306)
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Citation: Welty, R. et al., 2018. Divalent ions tune the kinetics of a bacterial GTPase center rRNA folding transition from secondary to tertiary structure. RNA, 24(12), pp.1828-1838.
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The DDB1–DCAF1–Vpr–UNG2 crystal structure reveals how HIV-1 Vpr steers human UNG2 toward destruction
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Citation: Heifetz, A. et al., 2016. The Fragment Molecular Orbital Method Reveals New Insight into the Chemical Nature of GPCR-Ligand Interactions. Journal of Chemical Information and Modeling, 56(1), pp.159-172.
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Citation: Lohman, J.R. et al., 2015. Structural and evolutionary relationships of "AT-less" type I polyketide synthase ketosynthases. Proceedings of the National Academy of Sciences, 112(41), pp.12693-12698.
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Citation: Gong, Z. et al., 2015. Biophysical Characterization of a Vaccine Candidate against HIV-1: The Transmembrane and Membrane Proximal Domains of HIV-1 gp41 as a Maltose Binding Protein Fusion A. Kumar, ed. PLoS ONE, 10(8), p.e0136507.
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Citation: Singh, S. et al., 2015. Structural Characterization of CalS8, a TDP-α-d-Glucose Dehydrogenase Involved in Calicheamicin Aminodideoxypentose Biosynthesis. J. Biol. Chem., 290(43), pp.26249-26258.
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Citation: Mucke, M. et al., 2015. Covariance mapping of two-photon double core hole states in C2H2and C2H6produced by an x-ray free electron laser. New J. Phys., 17(7), p.073002.
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One Crystal, Two Temperatures: Cryocooling Penalties Alter Ligand Binding to Transient Protein Sites
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Citation: Boutet, S. et al., 2015. Characterization and use of the spent beam for serial operation of LCLS. J Synchrotron Rad, 22(3), pp.634-643.
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Making water-soluble integral membrane proteins in vivo using an amphipathic protein fusion strategy
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Citation: Keedy, D.A. et al., 2015. Mapping the Conformational Landscape of a Dynamic Enzyme by XFEL and Multitemperature Crystallography.
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