Publications by BioXFEL Researchers Since Start of BioXFEL Grant

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Acknowledges BioXFEL NSF-STC
   
Authors Athiya Mahmud Hanna, Oriol Vendrell, Abbas Ourmazd, Robin Santra
Citation Hanna, A.M. et al., 2017. Laser control over the ultrafast Coulomb explosion of N22+ after Auger decay: A quantum-dynamics investigation. Physical Review A, 95(4).
Type Journal-article
Authors Petra Fromme, John C. H. Spence
Citation Fromme, P. & Spence, J.C.H., 2017. Split-Second Reactions. Scientific American, 316(5), pp.62-67.
Type Journal-article
Authors Justin T. Biel, Michael C. Thompson, Christian N. Cunningham, Jacob E. Corn, James S. Fraser
Citation Biel, J.T. et al., 2017. Flexibility and Design: Conformational Heterogeneity along the Evolutionary Trajectory of a Redesigned Ubiquitin. Structure, 25(5), pp.739-749.e3.
Type Journal-article
Authors Xuanxuan Li, Chun-Ya Chiu, Hsiang-Ju Wang, Stephan Kassemeyer, Sabine Botha, Robert L. Shoeman, Robert M. Lawrence, Christopher Kupitz, Richard Kirian, Daniel James, Dingjie Wang, Garrett Nelson, Marc Messerschmidt, Sébastien Boutet, Garth J. Williams, Elisabeth Hartmann, Aliakbar Jafarpour, Lutz M. Foucar, Anton Barty, Henry Chapman, Mengning Liang, Andreas Menzel, Fenglin Wang, Shibom Basu, Raimund Fromme, R. Bruce Doak, Petra Fromme, Uwe Weierstall, Michael H. Huang, John C. H. Spence, Ilme Schlichting, Brenda G. Hogue, Haiguang Liu
Citation Li, X. et al., 2017. Diffraction data of core-shell nanoparticles from an X-ray free electron laser. Scientific Data, 4, p.170048.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Benedikt J. Daurer, Kenta Okamoto, Johan Bielecki, Filipe R. N. C. Maia, Kerstin Mühlig, M. Marvin Seibert, Max F. Hantke, Carl Nettelblad, W. Henry Benner, Martin Svenda, Nicuşor Tîmneanu, Tomas Ekeberg, N. Duane Loh, Alberto Pietrini, Alessandro Zani, Asawari D. Rath, Daniel Westphal, Richard A. Kirian, Salah Awel, Max O. Wiedorn, Gijs van der Schot, Gunilla H. Carlsson, Dirk Hasse, Jonas A. Sellberg, Anton Barty, Jakob Andreasson, Sébastien Boutet, Garth Williams, Jason Koglin, Inger Andersson, Janos Hajdu, Daniel S. D. Larsson
Citation Daurer, B.J. et al., 2017. Experimental strategies for imaging bioparticles with femtosecond hard X-ray pulses. IUCrJ, 4(3).
Type Journal-article
Authors Haitao Zhang, Gye Won Han, Alexander Batyuk, Andrii Ishchenko, Kate L. White, Nilkanth Patel, Anastasiia Sadybekov, Beata Zamlynny, Michael T. Rudd, Kaspar Hollenstein, Alexandra Tolstikova, Thomas A. White, Mark S. Hunter, Uwe Weierstall, Wei Liu, Kerim Babaoglu, Eric L. Moore, Ryan D. Katz, Jennifer M. Shipman, Margarita Garcia-Calvo, Sujata Sharma, Payal Sheth, Stephen M. Soisson, Raymond C. Stevens, Vsevolod Katritch, Vadim Cherezov
Citation Zhang, H. et al., 2017. Structural basis for selectivity and diversity in angiotensin II receptors. Nature, 544(7650), pp.327-332.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Yahli Lorch, Roger D. Kornberg
Citation Lorch, Y. & Kornberg, R.D., 2017. Chromatin-remodeling for transcription. Quarterly Reviews of Biophysics, 50.
Type Journal-article
Authors Dominik Oberthuer, Juraj Knoška, Max O. Wiedorn, Kenneth R. Beyerlein, David A. Bushnell, Elena G. Kovaleva, Michael Heymann, Lars Gumprecht, Richard A. Kirian, Anton Barty, Valerio Mariani, Aleksandra Tolstikova, Luigi Adriano, Salah Awel, Miriam Barthelmess, Katerina Dörner, P. Lourdu Xavier, Oleksandr Yefanov, Daniel R. James, Garrett Nelson, Dingjie Wang, George Calvey, Yujie Chen, Andrea Schmidt, Michael Szczepek, Stefan Frielingsdorf, Oliver Lenz, Edward Snell, Philip J. Robinson, Božidar Šarler, Grega Belšak, Marjan Maček, Fabian Wilde, Andrew Aquila, Sébastien Boutet, Mengning Liang, Mark S. Hunter, Patrick Scheerer, John D. Lipscomb, Uwe Weierstall, Roger D. Kornberg, John C. H. Spence, Lois Pollack, Henry N. Chapman, Saša Bajt
Citation Oberthuer, D. et al., 2017. Double-flow focused liquid injector for efficient serial femtosecond crystallography. Scientific Reports, 7, p.44628.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Katherine A. Niessen, Mengyang Xu, Alessandro Paciaroni, Andrea Orecchini, Edward H. Snell, Andrea G. Markelz
Citation Niessen, K.A. et al., 2017. Moving in the Right Direction: Protein Vibrational Steering Function. Biophysical Journal, 112(5), pp.933-942.
Type Journal-article
Authors Franklin D Fuller, Sheraz Gul, Ruchira Chatterjee, E Sethe Burgie, Iris D Young, Hugo Lebrette, Vivek Srinivas, Aaron S Brewster, Tara Michels-Clark, Jonathan A Clinger, Babak Andi, Mohamed Ibrahim, Ernest Pastor, Casper de Lichtenberg, Rana Hussein, Christopher J Pollock, Miao Zhang, Claudiu A Stan, Thomas Kroll, Thomas Fransson, Clemens Weninger, Markus Kubin, Pierre Aller, Louise Lassalle, Philipp Bräuer, Mitchell D Miller, Muhamed Amin, Sergey Koroidov, Christian G Roessler, Marc Allaire, Raymond G Sierra, Peter T Docker, James M Glownia, Silke Nelson, Jason E Koglin, Diling Zhu, Matthieu Chollet, Sanghoon Song, Henrik Lemke, Mengning Liang, Dimosthenis Sokaras, Roberto Alonso-Mori, Athina Zouni, Johannes Messinger, Uwe Bergmann, Amie K Boal, J Martin Bollinger, Carsten Krebs, Martin Högbom, George N Phillips, Richard D Vierstra, Nicholas K Sauter, Allen M Orville, Jan Kern, Vittal K Yachandra, Junko Yano
Citation Fuller, F.D. et al., 2017. Drop-on-demand sample delivery for studying biocatalysts in action at X-ray free-electron lasers. Nature Methods, 14(4), pp.443-449.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Jörg Standfuss, John Spence
Citation Standfuss, J. & Spence, J., 2017. Serial crystallography at synchrotrons and X-ray lasers. IUCrJ, 4(2), pp.100-101.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Sun Kyung Kim, Lindsey Barron, Cynthia S. Hinck, Elyse M. Petrunak, Kristin E. Cano, Avinash Thangirala, Brian Iskra, Molly Brothers, Machell Vonberg, Belinda Leal, Blair Richter, Ravindra Kodali, Alex B. Taylor, Shoucheng Du, Christopher O. Barnes, Traian Sulea, Guillermo Calero, P. John Hart, Matthew J. Hart, Borries Demeler, Andrew P. Hinck
Citation Kim, S.K. et al., 2017. An Engineered TGF-β Monomer that Functions as a Dominant Negative to Block TGF-β Signaling. Journal of Biological Chemistry, p.jbc.M116.768754.
Type Journal-article
Authors Arpan Deb, William A. Johnson, Alexander P. Kline, Boston J. Scott, Lydia R. Meador, Dustin Srinivas, Jose M. Martin-Garcia, Katerina Dörner, Chad R. Borges, Rajeev Misra, Brenda G. Hogue, Petra Fromme, Tsafrir S. Mor
Citation Deb, A. et al., 2017. Bacterial expression, correct membrane targeting and functional folding of the HIV-1 membrane protein Vpu using a periplasmic signal peptide M. Schindler, ed. PLOS ONE, 12(2), p.e0172529.
Type Journal-article
Authors Premila P. Samuel, William C. Ou, George N. Phillips, John S. Olson
Citation Samuel, P.P. et al., 2017. Mechanism of Human Apohemoglobin Unfolding. Biochemistry, 56(10), pp.1444-1459.
Type Journal-article
Authors Hou-Fu Guo, Eun Jeong Cho, Ashwini K. Devkota, Yulong Chen, William Russell, George N. Phillips, Mitsuo Yamauchi, Kevin N. Dalby, Jonathan M. Kurie
Citation Guo, H.-F. et al., 2017. A scalable lysyl hydroxylase 2 expression system and luciferase-based enzymatic activity assay. Archives of Biochemistry and Biophysics, 618, pp.45-51.
Type Journal-article
Authors Alex Plumridge, Steve P. Meisburger, Kurt Andresen, Lois Pollack
Citation Plumridge, A. et al., 2017. The impact of base stacking on the conformations and electrostatics of single-stranded DNA. Nucleic Acids Research.
Type Journal-article
Authors Cornelius Gati, Dominik Oberthuer, Oleksandr Yefanov, Richard D. Bunker, Francesco Stellato, Elaine Chiu, Shin-Mei Yeh, Andrew Aquila, Shibom Basu, Richard Bean, Kenneth R. Beyerlein, Sabine Botha, Sébastien Boutet, Daniel P. DePonte, R. Bruce Doak, Raimund Fromme, Lorenzo Galli, Ingo Grotjohann, Daniel R. James, Christopher Kupitz, Lukas Lomb, Marc Messerschmidt, Karol Nass, Kimberly Rendek, Robert L. Shoeman, Dingjie Wang, Uwe Weierstall, Thomas A. White, Garth J. Williams, Nadia A. Zatsepin, Petra Fromme, John C. H. Spence, Kenneth N. Goldie, Johannes A. Jehle, Peter Metcalf, Anton Barty, Henry N. Chapman
Citation Gati, C. et al., 2017. Atomic structure of granulin determined from native nanocrystalline granulovirus using an X-ray free-electron laser. Proceedings of the National Academy of Sciences, 114(9), pp.2247-2252.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors M Jason de la Cruz, Johan Hattne, Dan Shi, Paul Seidler, Jose Rodriguez, Francis E Reyes, Michael R Sawaya, Duilio Cascio, Simon C Weiss, Sun Kyung Kim, Cynthia S Hinck, Andrew P Hinck, Guillermo Calero, David Eisenberg, Tamir Gonen
Citation De la Cruz, M.J. et al., 2017. Atomic-resolution structures from fragmented protein crystals with the cryoEM method MicroED. Nature Methods, 14(4), pp.399-402.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Sherif I Elshahawi, Hongnan Cao, Khaled A Shaaban, Larissa V Ponomareva, Thangaiah Subramanian, Mark L Farman, H Peter Spielmann, George N Phillips, Jon S Thorson, Shanteri Singh
Citation Elshahawi, S.I. et al., 2017. Structure and specificity of a permissive bacterial C-prenyltransferase. Nature Chemical Biology, 13(4), pp.366-368.
Type Journal-article
Authors Ebrahim Aboualizadeh, Mahsa Ranji, Christine M. Sorenson, Reyhaneh Sepehr, Nader Sheibani, Carol J. Hirschmugl
Citation Aboualizadeh, E. et al., 2017. Retinal oxidative stress at the onset of diabetes determined by synchrotron FTIR widefield imaging: towards diabetes pathogenesis. The Analyst, 142(7), pp.1061-1072.
Type Journal-article
Authors Nathan S. Babcock, David A. Sivak, Daniel Keedy, James S. Fraser
Citation Babcock, N.S. et al., 2017. Model Comparison to Identify Structural Heterogeneity in Protein X-Ray Crystallography. Biophysical Journal, 112(3), p.486a.
Type Journal-article
Authors Marius Schmidt
Citation Schmidt, M., 2017. A short history of structure based research on the photocycle of photoactive yellow protein. Structural Dynamics, 4(3), p.032201.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Shigeki Nagai, Ralph E. Davis, Pierre Jean Mattei, Kyle Patrick Eagen, Roger D. Kornberg
Citation Nagai, S. et al., 2017. Chromatin potentiates transcription. Proceedings of the National Academy of Sciences, 114(7), pp.1536-1541.
Type Journal-article
Authors Madison B. Adolph, Anjuman Ara, Yuqing Feng, Cristina J. Wittkopp, Michael Emerman, James S. Fraser, Linda Chelico
Citation Adolph, M.B. et al., 2017. Cytidine deaminase efficiency of the lentiviral viral restriction factor APOBEC3C correlates with dimerization. Nucleic Acids Research, 45(6), pp.3378-3394.
Type Journal-article
Authors Andrea M. Katz, Igor S. Tolokh, Suzette A. Pabit, Nathan Baker, Alexey V. Onufriev, Lois Pollack
Citation Katz, A.M. et al., 2017. Spermine Condenses DNA, but Not RNA Duplexes. Biophysical Journal, 112(1), pp.22-30.
Type Journal-article
Authors Ryan R. Hughes, Khaled A. Shaaban, Jianjun Zhang, Hongnan Cao, George N. Phillips, Jon S. Thorson
Citation Hughes, R.R. et al., 2017. OleD Loki as a Catalyst for Tertiary Amine and Hydroxamate Glycosylation. ChemBioChem, 18(4), pp.363-367.
Type Journal-article
Authors Yujie Chen, Joshua M. Tokuda, Traci Topping, Steve P. Meisburger, Suzette A. Pabit, Lisa M. Gloss, Lois Pollack
Citation Chen, Y. et al., 2016. Asymmetric unwrapping of nucleosomal DNA propagates asymmetric opening and dissociation of the histone core. Proceedings of the National Academy of Sciences, 114(2), pp.334-339.
Type Journal-article
Authors Silvia Russi, Ana González, Lillian R. Kenner, Daniel A. Keedy, James S. Fraser, Henry van den Bedem
Citation Russi, S. et al., 2017. Conformational variation of proteins at room temperature is not dominated by radiation damage. Journal of Synchrotron Radiation, 24(1), pp.73-82.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Christopher Kupitz, Jose L. Olmos, Mark Holl, Lee Tremblay, Kanupriya Pande, Suraj Pandey, Dominik Oberthür, Mark Hunter, Mengning Liang, Andrew Aquila, Jason Tenboer, George Calvey, Andrea Katz, Yujie Chen, Max O. Wiedorn, Juraj Knoska, Alke Meents, Valerio Majriani, Tyler Norwood, Ishwor Poudyal, Thomas Grant, Mitchell D. Miller, Weijun Xu, Aleksandra Tolstikova, Andrew Morgan, Markus Metz, Jose M. Martin-Garcia, James D. Zook, Shatabdi Roy-Chowdhury, Jesse Coe, Nirupa Nagaratnam, Domingo Meza, Raimund Fromme, Shibom Basu, Matthias Frank, Thomas White, Anton Barty, Sasa Bajt, Oleksandr Yefanov, Henry N. Chapman, Nadia Zatsepin, Garrett Nelson, Uwe Weierstall, John Spence, Peter Schwander, Lois Pollack, Petra Fromme, Abbas Ourmazd, George N. Phillips, Marius Schmidt
Citation Kupitz, C. et al., 2017. Structural enzymology using X-ray free electron lasers. Structural Dynamics, 4(4), p.044003.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Alex Plumridge, Steve P. Meisburger, Lois Pollack
Citation Plumridge, A., Meisburger, S.P. & Pollack, L., 2016. Visualizing single-stranded nucleic acids in solution. Nucleic Acids Research, p.gkw1297.
Type Journal-article
Authors Paul V. Jones, Gabriel L. Salmon, Alexandra Ros
Citation Jones, P.V., Salmon, G.L. & Ros, A., 2017. Continuous Separation of DNA Molecules by Size Using Insulator-Based Dielectrophoresis. Analytical Chemistry, 89(3), pp.1531-1539.
Type Journal-article
Authors Yi Zheng, Ling Qin, Natalia V. Ortiz Zacarías, Henk de Vries, Gye Won Han, Martin Gustavsson, Marta Dabros, Chunxia Zhao, Robert J. Cherney, Percy Carter, Dean Stamos, Ruben Abagyan, Vadim Cherezov, Raymond C. Stevens, Adriaan P. IJzerman, Laura H. Heitman, Andrew Tebben, Irina Kufareva, Tracy M. Handel
Citation Zheng, Y. et al., 2016. Structure of CC chemokine receptor 2 with orthosteric and allosteric antagonists. Nature, 540(7633), pp.458-461.
Type Journal-article
Authors Petra Fromme, Andrej Sali
Citation Fromme, P. & Sali, A., 2016. Editorial overview: Biophysical and molecular biological methods. Current Opinion in Structural Biology, 40, pp.ix-xi.
Type Journal-article
Authors Iris D. Young, Mohamed Ibrahim, Ruchira Chatterjee, Sheraz Gul, Franklin D. Fuller, Sergey Koroidov, Aaron S. Brewster, Rosalie Tran, Roberto Alonso-Mori, Thomas Kroll, Tara Michels-Clark, Hartawan Laksmono, Raymond G. Sierra, Claudiu A. Stan, Rana Hussein, Miao Zhang, Lacey Douthit, Markus Kubin, Casper de Lichtenberg, Long Vo Pham, Håkan Nilsson, Mun Hon Cheah, Dmitriy Shevela, Claudio Saracini, Mackenzie A. Bean, Ina Seuffert, Dimosthenis Sokaras, Tsu-Chien Weng, Ernest Pastor, Clemens Weninger, Thomas Fransson, Louise Lassalle, Philipp Bräuer, Pierre Aller, Peter T. Docker, Babak Andi, Allen M. Orville, James M. Glownia, Silke Nelson, Marcin Sikorski, Diling Zhu, Mark S. Hunter, Thomas J. Lane, Andy Aquila, Jason E. Koglin, Joseph Robinson, Mengning Liang, Sébastien Boutet, Artem Y. Lyubimov, Monarin Uervirojnangkoorn, Nigel W. Moriarty, Dorothee Liebschner, Pavel V. Afonine, David G. Waterman, Gwyndaf Evans, Philippe Wernet, Holger Dobbek, William I. Weis, Axel T. Brunger, Petrus H. Zwart, Paul D. Adams, Athina Zouni, Johannes Messinger, Uwe Bergmann, Nicholas K. Sauter, Jan Kern, Vittal K. Yachandra, Junko Yano
Citation Young, I.D. et al., 2016. Structure of photosystem II and substrate binding at room temperature. Nature, 540(7633), pp.453-457.
Type Journal-article
Authors Victoria Kabanova, Marius Schmidt, Friedrich Schotte, Marco Cammarata, Michael Wulff
Citation Kabanova, V. et al., 2016. Simulations of single-pulse Laue diffraction from proteins with radiation from synchrotron and XFEL sources. Acta Crystallographica Section A Foundations and Advances, 72(a1), pp.s142-s142.
Type Journal-article
Authors Przemyslaw Nogly, Valerie Panneels, Garrett Nelson, Cornelius Gati, Tetsunari Kimura, Christopher Milne, Despina Milathianaki, Minoru Kubo, Wenting Wu, Chelsie Conrad, Jesse Coe, Richard Bean, Yun Zhao, Petra Bath, Robert Dods, Rajiv Harimoorthy, Kenneth Beyerlein, Jan Rheinberger, Daniel James, Daniel DePonte, Chufeng Li, Leonardo Sala, Garth Williams, Mark Hunter, Jason E. Koglin, Peter Berntsen, Eriko Nango, So Iwata, Henry Chapman, Petra Fromme, Matthias Frank, Rafael Abela, Sébastien Boutet, Anton Barty, Thomas A. White, Uwe Weierstall, John Spence, Richard Neutze, Gebhard Schertler, Jörg Standfuss
Citation Nogly, P. et al., 2016. Lipidic cubic phase injector is a viable crystal delivery system for time-resolved serial crystallography. Acta Crystallographica Section A Foundations and Advances, 72(a1), pp.s41-s42.
Type Journal-article
Authors Andrew E. Bruno, Alexei S. Soares, Robin L. Owen, Edward H. Snell
Citation Bruno, A.E. et al., 2016. The use of haptic interfaces and web services in crystallography: an application for a `screen to beam' interface. Journal of Applied Crystallography, 49(6), pp.2082-2090.
Type Journal-article
Authors J. R. Stagno, Y. Liu, Y. R. Bhandari, C. E. Conrad, S. Panja, M. Swain, L. Fan, G. Nelson, C. Li, D. R. Wendel, T. A. White, J. D. Coe, M. O. Wiedorn, J. Knoska, D. Oberthuer, R. A. Tuckey, P. Yu, M. Dyba, S. G. Tarasov, U. Weierstall, T. D. Grant, C. D. Schwieters, J. Zhang, A. R. Ferré-D’Amaré, P. Fromme, D. E. Draper, M. Liang, M. S. Hunter, S. Boutet, K. Tan, X. Zuo, X. Ji, A. Barty, N. A. Zatsepin, H. N. Chapman, J. C. H. Spence, S. A. Woodson, Y.-X. Wang
Citation Stagno, J.R. et al., 2016. Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography. Nature, 541(7636), pp.242-246.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Richard A. Kirian, Salah Awel, Max Wiedorn, Daniel Horke, Nils Roth, Niko O. Eckerskorn, Jochen Küpper, Henry N. Chapman, Andrei V. Rode
Citation Kirian, R.A. et al., 2016. Development of a photophoretic optical guide for femtosecond x-ray diffractive imaging of aerosolized nanoparticles (Conference Presentation) K. Dholakia & G. C. Spalding, eds. Optical Trapping and Optical Micromanipulation XIII.
Type Proceedings-article
Authors Mark S. Hunter, Chun Hong Yoon, Hasan DeMirci, Raymond G. Sierra, E. Han Dao, Radman Ahmadi, Fulya Aksit, Andrew L. Aquila, Halilibrahim Ciftci, Serge Guillet, Matt J. Hayes, Thomas J. Lane, Meng Liang, Ulf Lundström, Jason E. Koglin, Paul Mgbam, Yashas Rao, Lindsey Zhang, Soichi Wakatsuki, James M. Holton, Sébastien Boutet
Citation Hunter, M.S. et al., 2016. Selenium single-wavelength anomalous diffraction de novo phasing using an X-ray-free electron laser. Nature Communications, 7, p.13388.
Type Journal-article
Authors Jian Min Zuo, John C.H. Spence
Citation Zuo, J.M. & Spence, J.C.H., 2017. Advanced Transmission Electron Microscopy.
Type Book
Authors Petra Edlund, Heikki Takala, Elin Claesson, Léocadie Henry, Robert Dods, Heli Lehtivuori, Matthijs Panman, Kanupriya Pande, Thomas White, Takanori Nakane, Oskar Berntsson, Emil Gustavsson, Petra Båth, Vaibhav Modi, Shatabdi Roy-Chowdhury, James Zook, Peter Berntsen, Suraj Pandey, Ishwor Poudyal, Jason Tenboer, Christopher Kupitz, Anton Barty, Petra Fromme, Jake D. Koralek, Tomoyuki Tanaka, John Spence, Mengning Liang, Mark S. Hunter, Sebastien Boutet, Eriko Nango, Keith Moffat, Gerrit Groenhof, Janne Ihalainen, Emina A. Stojković, Marius Schmidt, Sebastian Westenhoff
Citation Edlund, P. et al., 2016. The room temperature crystal structure of a bacterial phytochrome determined by serial femtosecond crystallography. Scientific Reports, 6(1).
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Justin T Biel, Michael C Thompson, Christian N Cunningham, Jacob E Corn, James S Fraser
Citation Biel, J.T. et al., 2016. Flexibility and design: conformational heterogeneity along the evolutionary trajectory of a redesigned ubiquitin.
Type Posted-content
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Artem Y Lyubimov, Monarin Uervirojnangkoorn, Oliver B Zeldin, Qiangjun Zhou, Minglei Zhao, Aaron S Brewster, Tara Michels-Clark, James M Holton, Nicholas K Sauter, William I Weis, Axel T Brunger
Citation Lyubimov, A.Y. et al., 2016. Advances in X-ray free electron laser (XFEL) diffraction data processing applied to the crystal structure of the synaptotagmin-1 / SNARE complex. eLife, 5.
Type Journal-article
Authors Jin Xiang, Eugene Chun, Chang Liu, Liang Jing, Zina Al-Sahouri, Lan Zhu, Wei Liu
Citation Xiang, J. et al., 2016. Successful Strategies to Determine High-Resolution Structures of GPCRs. Trends in Pharmacological Sciences, 37(12), pp.1055-1069.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors J P J Chen, R D Arnal, A J Morgan, R J Bean, K R Beyerlein, H N Chapman, P J Bones, R P Millane, R A Kirian
Citation Chen, J.P.J. et al., 2016. Reconstruction of an object from diffraction intensities averaged over multiple object clusters. Journal of Optics, 18(11), p.114003.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Jacques-Philippe Colletier, Michael R. Sawaya, Mari Gingery, Jose A. Rodriguez, Duilio Cascio, Aaron S. Brewster, Tara Michels-Clark, Robert H. Hice, Nicolas Coquelle, Sébastien Boutet, Garth J. Williams, Marc Messerschmidt, Daniel P. DePonte, Raymond G. Sierra, Hartawan Laksmono, Jason E. Koglin, Mark S. Hunter, Hyun-Woo Park, Monarin Uervirojnangkoorn, Dennis K. Bideshi, Axel T. Brunger, Brian A. Federici, Nicholas K. Sauter, David S. Eisenberg
Citation Colletier, J.-P. et al., 2016. De novo phasing with X-ray laser reveals mosquito larvicide BinAB structure. Nature, 539(7627), pp.43-47.
Type Journal-article
Authors Derek Mendez, Herschel Watkins, Shenglan Qiao, Kevin S. Raines, Thomas J. Lane, Gundolf Schenk, Garrett Nelson, Ganesh Subramanian, Kensuke Tono, Yasumasa Joti, Makina Yabashi, Daniel Ratner, Sebastian Doniach
Citation Mendez, D. et al., 2016. Angular correlations of photons from solution diffraction at a free-electron laser encode molecular structure. IUCrJ, 3(6), pp.420-429.
Type Journal-article
Authors A. Batyuk, L. Galli, A. Ishchenko, G. W. Han, C. Gati, P. A. Popov, M.-Y. Lee, B. Stauch, T. A. White, A. Barty, A. Aquila, M. S. Hunter, M. Liang, S. Boutet, M. Pu, Z.-j. Liu, G. Nelson, D. James, C. Li, Y. Zhao, J. C. H. Spence, W. Liu, P. Fromme, V. Katritch, U. Weierstall, R. C. Stevens, V. Cherezov
Citation Batyuk, A. et al., 2016. Native phasing of x-ray free-electron laser data for a G protein-coupled receptor. Science Advances, 2(9), pp.e1600292-e1600292.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Nicoleta Herascu, Mark S. Hunter, Golia Shafiei, Mehdi Najafi, T. Wade Johnson, Petra Fromme, Valter Zazubovich
Citation Herascu, N. et al., 2016. Spectral Hole Burning in Cyanobacterial Photosystem I with P700 in Oxidized and Neutral States. The Journal of Physical Chemistry B, 120(40), pp.10483-10495.
Type Journal-article
Authors Andrii Ishchenko, Vadim Cherezov, Wei Liu
Citation Ishchenko, A., Cherezov, V. & Liu, W., 2016. Preparation and Delivery of Protein Microcrystals in Lipidic Cubic Phase for Serial Femtosecond Crystallography. Journal of Visualized Experiments, (115).
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Jakub Szlachetko, Joanna Hoszowska, Jean-Claude Dousse, Maarten Nachtegaal, Wojciech Błachucki, Yves Kayser, Jacinto Sà, Marc Messerschmidt, Sebastien Boutet, Garth J. Williams, Christian David, Grigory Smolentsev, Jeroen A. van Bokhoven, Bruce D. Patterson, Thomas J. Penfold, Gregor Knopp, Marek Pajek, Rafael Abela, Christopher J. Milne
Citation Szlachetko, J. et al., 2016. Establishing nonlinearity thresholds with ultraintense X-ray pulses. Scientific Reports, 6(1).
Type Journal-article
Authors B. Abbey, R. A. Dilanian, C. Darmanin, R. A. Ryan, C. T. Putkunz, A. V. Martin, D. Wood, V. Streltsov, M. W. M. Jones, N. Gaffney, F. Hofmann, G. J. Williams, S. Boutet, M. Messerschmidt, M. M. Seibert, S. Williams, E. Curwood, E. Balaur, A. G. Peele, K. A. Nugent, H. M. Quiney
Citation Abbey, B. et al., 2016. X-ray laser-induced electron dynamics observed by femtosecond diffraction from nanocrystals of Buckminsterfullerene. Science Advances, 2(9), pp.e1601186-e1601186.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Philip J. Robinson, Michael J. Trnka, David A. Bushnell, Ralph E. Davis, Pierre-Jean Mattei, Alma L. Burlingame, Roger D. Kornberg
Citation Robinson, P.J. et al., 2016. Structure of a Complete Mediator-RNA Polymerase II Pre-Initiation Complex. Cell, 166(6), pp.1411-1422.e16.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Dilano Saldin
Citation Saldin, D., 2016. Ghost imaging with x rays. Physics, 9.
Type Journal-article
Authors George D. Calvey, Andrea M. Katz, Chris B. Schaffer, Lois Pollack
Citation Calvey, G.D. et al., 2016. Mixing injector enables time-resolved crystallography with high hit rate at X-ray free electron lasers. Structural Dynamics, 3(5), p.054301.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Ying Wu, Xiaohong Zhou, Christopher O Barnes, Maria DeLucia, Aina E Cohen, Angela M Gronenborn, Jinwoo Ahn, Guillermo Calero
Citation Wu, Y. et al., 2016. The DDB1-DCAF1-Vpr-UNG2 crystal structure reveals how HIV-1 Vpr steers human UNG2 toward destruction. Nature Structural & Molecular Biology, 23(10), pp.933-940.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Chin-Yuan Chang, Jeremy R. Lohman, Hongnan Cao, Kemin Tan, Jeffrey D. Rudolf, Ming Ma, Weijun Xu, Craig A. Bingman, Ragothaman M. Yennamalli, Lance Bigelow, Gyorgy Babnigg, Xiaohui Yan, Andrzej Joachimiak, George N. Phillips, Ben Shen
Citation Chang, C.-Y. et al., 2016. Crystal Structures of SgcE6 and SgcC, the Two-Component Monooxygenase That Catalyzes Hydroxylation of a Carrier Protein-Tethered Substrate during the Biosynthesis of the Enediyne Antitumor Antibiotic C-1027 inStreptomyces globisporus. Biochemistry, 55(36), pp.5142-5154.
Type Journal-article
Authors John Spence
Citation Spence, J., 2016. Electron Crystallography, Charge-Density Mapping and Nanodiffraction. Transmission Electron Microscopy, pp.145-166.
Type Book-chapter
Authors Lan Zhu, Uwe Weierstall, Vadim Cherezov, Wei Liu
Citation Zhu, L. et al., 2016. Serial Femtosecond Crystallography of Membrane Proteins. The Next Generation in Membrane Protein Structure Determination, pp.151-160.
Type Book-chapter
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Przemyslaw Nogly, Valerie Panneels, Garrett Nelson, Cornelius Gati, Tetsunari Kimura, Christopher Milne, Despina Milathianaki, Minoru Kubo, Wenting Wu, Chelsie Conrad, Jesse Coe, Richard Bean, Yun Zhao, Petra Båth, Robert Dods, Rajiv Harimoorthy, Kenneth R. Beyerlein, Jan Rheinberger, Daniel James, Daniel DePonte, Chufeng Li, Leonardo Sala, Garth J. Williams, Mark S. Hunter, Jason E. Koglin, Peter Berntsen, Eriko Nango, So Iwata, Henry N. Chapman, Petra Fromme, Matthias Frank, Rafael Abela, Sébastien Boutet, Anton Barty, Thomas A. White, Uwe Weierstall, John Spence, Richard Neutze, Gebhard Schertler, Jörg Standfuss
Citation Nogly, P. et al., 2016. Lipidic cubic phase injector is a viable crystal delivery system for time-resolved serial crystallography. Nature Communications, 7, p.12314.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Jeffrey D. Rudolf, Liao-Bin Dong, Hongnan Cao, Catherine Hatzos-Skintges, Jerzy Osipiuk, Michael Endres, Chin-Yuan Chang, Ming Ma, Gyorgy Babnigg, Andrzej Joachimiak, George N. Phillips, Ben Shen
Citation Rudolf, J.D. et al., 2016. Structure of the ent -Copalyl Diphosphate Synthase PtmT2 from Streptomyces platensis CB00739, a Bacterial Type II Diterpene Synthase . Journal of the American Chemical Society, 138(34), pp.10905-10915.
Type Journal-article
Authors Mausumi Mahapatra, Luke Burkholder, Michael Garvey, Yun Bai, Dilano K. Saldin, Wilfred T. Tysoe
Citation Mahapatra, M. et al., 2016. Enhanced hydrogenation activity and diastereomeric interactions of methyl pyruvate co-adsorbed with R-1-(1-naphthyl)ethylamine on Pd(111). Nature Communications, 7, p.12380.
Type Journal-article
Authors Ming Yan, Srinivas Chakravarthy, Joshua M. Tokuda, Lois Pollack, Gregory D. Bowman, Young-Sam Lee
Citation Yan, M. et al., 2016. Succinyl-5-aminoimidazole-4-carboxamide-1-ribose 5′-Phosphate (SAICAR) Activates Pyruvate Kinase Isoform M2 (PKM2) in Its Dimeric Form. Biochemistry, 55(33), pp.4731-4736.
Type Journal-article
Authors Anna Munke, Jakob Andreasson, Andrew Aquila, Salah Awel, Kartik Ayyer, Anton Barty, Richard J. Bean, Peter Berntsen, Johan Bielecki, Sébastien Boutet, Maximilian Bucher, Henry N. Chapman, Benedikt J. Daurer, Hasan DeMirci, Veit Elser, Petra Fromme, Janos Hajdu, Max F. Hantke, Akifumi Higashiura, Brenda G. Hogue, Ahmad Hosseinizadeh, Yoonhee Kim, Richard A. Kirian, Hemanth K.N. Reddy, Ti-Yen Lan, Daniel S.D. Larsson, Haiguang Liu, N. Duane Loh, Filipe R.N.C. Maia, Adrian P. Mancuso, Kerstin Mühlig, Atsushi Nakagawa, Daewoong Nam, Garrett Nelson, Carl Nettelblad, Kenta Okamoto, Abbas Ourmazd, Max Rose, Gijs van der Schot, Peter Schwander, M. Marvin Seibert, Jonas A. Sellberg, Raymond G. Sierra, Changyong Song, Martin Svenda, Nicusor Timneanu, Ivan A. Vartanyants, Daniel Westphal, Max O. Wiedorn, Garth J. Williams, Paulraj Lourdu Xavier, Chun Hong Yoon, James Zook
Citation Munke, A. et al., 2016. Coherent diffraction of single Rice Dwarf virus particles using hard X-rays at the Linac Coherent Light Source. Scientific Data, 3, p.160064.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Max F. Hantke, Dirk Hasse, Tomas Ekeberg, Katja John, Martin Svenda, Duane Loh, Andrew V. Martin, Nicusor Timneanu, Daniel S.D. Larsson, Gijs van der Schot, Gunilla H. Carlsson, Margareta Ingelman, Jakob Andreasson, Daniel Westphal, Bianca Iwan, Charlotte Uetrecht, Johan Bielecki, Mengning Liang, Francesco Stellato, Daniel P. DePonte, Sadia Bari, Robert Hartmann, Nils Kimmel, Richard A. Kirian, M. Marvin Seibert, Kerstin Mühlig, Sebastian Schorb, Ken Ferguson, Christoph Bostedt, Sebastian Carron, John D. Bozek, Daniel Rolles, Artem Rudenko, Lutz Foucar, Sascha W. Epp, Henry N. Chapman, Anton Barty, Inger Andersson, Janos Hajdu, Filipe R.N.C. Maia
Citation Hantke, M.F. et al., 2016. A data set from flash X-ray imaging of carboxysomes. Scientific Data, 3, p.160061.
Type Journal-article
Authors Tomas Ekeberg, Martin Svenda, M. Marvin Seibert, Chantal Abergel, Filipe R.N.C. Maia, Virginie Seltzer, Daniel P. DePonte, Andrew Aquila, Jakob Andreasson, Bianca Iwan, Olof Jönsson, Daniel Westphal, Duško Odić, Inger Andersson, Anton Barty, Meng Liang, Andrew V. Martin, Lars Gumprecht, Holger Fleckenstein, Saša Bajt, Miriam Barthelmess, Nicola Coppola, Jean-Michel Claverie, N. Duane Loh, Christoph Bostedt, John D. Bozek, Jacek Krzywinski, Marc Messerschmidt, Michael J. Bogan, Christina Y. Hampton, Raymond G. Sierra, Matthias Frank, Robert L. Shoeman, Lukas Lomb, Lutz Foucar, Sascha W. Epp, Daniel Rolles, Artem Rudenko, Robert Hartmann, Andreas Hartmann, Nils Kimmel, Peter Holl, Georg Weidenspointner, Benedikt Rudek, Benjamin Erk, Stephan Kassemeyer, Ilme Schlichting, Lothar Strüder, Joachim Ullrich, Carlo Schmidt, Faton Krasniqi, Günter Hauser, Christian Reich, Heike Soltau, Sebastian Schorb, Helmut Hirsemann, Cornelia Wunderer, Heinz Graafsma, Henry Chapman, Janos Hajdu
Citation Ekeberg, T. et al., 2016. Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser. Scientific Data, 3, p.160060.
Type Journal-article
Authors Gijs van der Schot, Martin Svenda, Filipe R.N.C. Maia, Max F. Hantke, Daniel P. DePonte, M. Marvin Seibert, Andrew Aquila, Joachim Schulz, Richard A. Kirian, Mengning Liang, Francesco Stellato, Sadia Bari, Bianca Iwan, Jakob Andreasson, Nicusor Timneanu, Johan Bielecki, Daniel Westphal, Francisca Nunes de Almeida, Duško Odić, Dirk Hasse, Gunilla H. Carlsson, Daniel S.D. Larsson, Anton Barty, Andrew V. Martin, Sebastian Schorb, Christoph Bostedt, John D. Bozek, Sebastian Carron, Ken Ferguson, Daniel Rolles, Artem Rudenko, Sascha W. Epp, Lutz Foucar, Benedikt Rudek, Benjamin Erk, Robert Hartmann, Nils Kimmel, Peter Holl, Lars Englert, N. Duane Loh, Henry N. Chapman, Inger Andersson, Janos Hajdu, Tomas Ekeberg
Citation Van der Schot, G. et al., 2016. Open data set of live cyanobacterial cells imaged using an X-ray laser. Scientific Data, 3, p.160058.
Type Journal-article
Authors Thomas A. White, Anton Barty, Wei Liu, Andrii Ishchenko, Haitao Zhang, Cornelius Gati, Nadia A. Zatsepin, Shibom Basu, Dominik Oberthür, Markus Metz, Kenneth R. Beyerlein, Chun Hong Yoon, Oleksandr M. Yefanov, Daniel James, Dingjie Wang, Marc Messerschmidt, Jason E. Koglin, Sébastien Boutet, Uwe Weierstall, Vadim Cherezov
Citation White, T.A. et al., 2016. Serial femtosecond crystallography datasets from G protein-coupled receptors. Scientific Data, 3, p.160057.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Robert M. Lawrence, James D. Zook, Brenda G. Hogue
Citation Lawrence, R.M., Zook, J.D. & Hogue, B.G., 2016. Full inactivation of alphaviruses in single particle and crystallized forms. Journal of Virological Methods, 236, pp.237-244.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Haiguang Liu, John C. H. Spence
Citation Liu, H. & Spence, J.C.H., 2016. XFEL data analysis for structural biology. Quantitative Biology, 4(3), pp.159-176.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Hongxing He, Hengrui Fang, Mitchell D. Miller, George N. Phillips, Wu-Pei Su
Citation He, H. et al., 2016. Improving the efficiency of molecular replacement by utilizing a new iterative transform phasing algorithm. Acta Crystallographica Section A Foundations and Advances, 72(5), pp.539-547.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Tingting Huang, Chin-Yuan Chang, Jeremy R Lohman, Jeffrey D Rudolf, Youngchang Kim, Changsoo Chang, Dong Yang, Ming Ma, Xiaohui Yan, Ivana Crnovcic, Lance Bigelow, Shonda Clancy, Craig A Bingman, Ragothaman M Yennamalli, Gyorgy Babnigg, Andrzej Joachimiak, George N Phillips, Ben Shen
Citation Huang, T. et al., 2016. Crystal structure of SgcJ, an NTF2-like superfamily protein involved in biosynthesis of the nine-membered enediyne antitumor antibiotic C-1027. The Journal of Antibiotics, 69(10), pp.731-740.
Type Journal-article
Authors Aleksander V. Drozdetski, Igor S. Tolokh, Lois Pollack, Nathan Baker, Alexey V. Onufriev
Citation Drozdetski, A.V. et al., 2016. Opposing Effects of Multivalent Ions on the Flexibility of DNA and RNA. Physical Review Letters, 117(2).
Type Journal-article
Authors Tyler D. Huber, Fengbin Wang, Shanteri Singh, Brooke R. Johnson, Jianjun Zhang, Manjula Sunkara, Steven G. Van Lanen, Andrew J. Morris, George N. Phillips, Jon S. Thorson
Citation Huber, T.D. et al., 2016. Functional AdoMet Isosteres Resistant to Classical AdoMet Degradation Pathways. ACS Chemical Biology, 11(9), pp.2484-2491.
Type Journal-article
Authors John Spence, Eaton Lattman
Citation Spence, J. & Lattman, E., 2016. Imaging enzyme kinetics at atomic resolution. IUCrJ, 3(4), pp.228-229.
Type Journal-article
Authors Ximeng Y. Dow, Christopher M. Dettmar, Emma L. DeWalt, Justin A. Newman, Alexander R. Dow, Shatabdi Roy-Chowdhury, Jesse D. Coe, Christopher Kupitz, Petra Fromme, Garth J. Simpson
Citation Dow, X.Y. et al., 2016. Second harmonic generation correlation spectroscopy for characterizing translationally diffusing protein nanocrystals. Acta Crystallographica Section D Structural Biology, 72(7), pp.849-859.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Mahsa Ranji, Mohammad M. Motlagh, Fahimeh Salehpor, Reyhaneh Sepehr, James S. Heisner, Ranjan K. Dash, Amadou K. S. Camara
Citation Ranji, M. et al., 2016. Optical Cryoimaging Reveals a Heterogeneous Distribution of Mitochondrial Redox State in ex vivo Guinea Pig Hearts and its Alteration during Ischemia and Reperfusion. IEEE Journal of Translational Engineering in Health and Medicine, pp.1-1.
Type Journal-article
Authors Hung T. Nguyen, Suzette A. Pabit, Lois Pollack, David A. Case
Citation Nguyen, H.T. et al., 2016. Extracting water and ion distributions from solution x-ray scattering experiments. The Journal of Chemical Physics, 144(21), p.214105.
Type Journal-article
Authors Mian Yang, Randall Nelson, Alexandra Ros
Citation Yang, M., Nelson, R. & Ros, A., 2016. Toward Analysis of Proteins in Single Cells: A Quantitative Approach Employing Isobaric Tags with MALDI Mass Spectrometry Realized with a Microfluidic Platform. Analytical Chemistry, 88(13), pp.6672-6679.
Type Journal-article
Authors Suzette A. Pabit, Andrea M. Katz, Igor S. Tolokh, Aleksander Drozdetski, Nathan Baker, Alexey V. Onufriev, Lois Pollack
Citation Pabit, S.A. et al., 2016. Understanding nucleic acid structural changes by comparing wide-angle x-ray scattering (WAXS) experiments to molecular dynamics simulations. The Journal of Chemical Physics, 144(20), p.205102.
Type Journal-article
Authors Valerio Mariani, Andrew Morgan, Chun Hong Yoon, Thomas J. Lane, Thomas A. White, Christopher O'Grady, Manuela Kuhn, Steve Aplin, Jason Koglin, Anton Barty, Henry N. Chapman
Citation Mariani, V. et al., 2016. OnDA: online data analysis and feedback for serial X-ray imaging. Journal of Applied Crystallography, 49(3), pp.1073-1080.
Type Journal-article
Authors Claudiu A. Stan, Despina Milathianaki, Hartawan Laksmono, Raymond G. Sierra, Trevor A. McQueen, Marc Messerschmidt, Garth J. Williams, Jason E. Koglin, Thomas J. Lane, Matt J. Hayes, Serge A. H. Guillet, Mengning Liang, Andrew L. Aquila, Philip R. Willmott, Joseph S. Robinson, Karl L. Gumerlock, Sabine Botha, Karol Nass, Ilme Schlichting, Robert L. Shoeman, Howard A. Stone, Sébastien Boutet
Citation Stan, C.A. et al., 2016. Liquid explosions induced by X-ray laser pulses. Nature Physics, 12(10), pp.966-971.
Type Journal-article
Authors J. M. Berg, N. Bhalla, P. E. Bourne, M. Chalfie, D. G. Drubin, J. S. Fraser, C. W. Greider, M. Hendricks, C. Jones, R. Kiley, S. King, M. W. Kirschner, H. M. Krumholz, R. Lehmann, M. Leptin, B. Pulverer, B. Rosenzweig, J. E. Spiro, M. Stebbins, C. Strasser, S. Swaminathan, P. Turner, R. D. Vale, K. VijayRaghavan, C. Wolberger
Citation Berg, J.M. et al., 2016. Preprints for the life sciences. Science, 352(6288), pp.899-901.
Type Journal-article
Authors A. V. Mishin, A. P. Luginina, A. P. Potapenko, V. I. Borshchevskiy, V. Katritch, E. Edelweiss, I. S. Okhrimenko, V. I. Gordeliy, V. G. Cherezov
Citation Mishin, A.V. et al., 2016. Expression and purification of an engineered human endothelin receptor B in a monomeric form. Doklady Biochemistry and Biophysics, 467(1), pp.157-161.
Type Journal-article
Authors Garrett Nelson, Richard A. Kirian, Uwe Weierstall, Nadia A. Zatsepin, Tomáš Faragó, Tilo Baumbach, Fabian Wilde, Fabian B. P. Niesler, Benjamin Zimmer, Izumi Ishigami, Masahide Hikita, Saša Bajt, Syun-Ru Yeh, Denis L. Rousseau, Henry N. Chapman, John C. H. Spence, Michael Heymann
Citation Nelson, G. et al., 2016. Three-dimensional-printed gas dynamic virtual nozzles for x-ray laser sample delivery. Optics Express, 24(11), p.11515.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Richard A. Kirian, Henry N. Chapman
Citation Kirian, R.A. & Chapman, H.N., 2016. Imaging of Objects by Coherent Diffraction of X-Ray Free-Electron Laser Pulses. Synchrotron Light Sources and Free-Electron Lasers, pp.1135-1195.
Type Book-chapter
Authors Katerina Dörner, Jose M. Martin-Garcia, Christopher Kupitz, Zhen Gong, T. Conn Mallet, Liqing Chen, Rebekka M. Wachter, Petra Fromme
Citation Dörner, K. et al., 2016. Characterization of Protein Nanocrystals Based on the Reversibility of Crystallization. Crystal Growth & Design, 16(7), pp.3838-3845.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors K. Pande, C. D. M. Hutchison, G. Groenhof, A. Aquila, J. S. Robinson, J. Tenboer, S. Basu, S. Boutet, D. P. DePonte, M. Liang, T. A. White, N. A. Zatsepin, O. Yefanov, D. Morozov, D. Oberthuer, C. Gati, G. Subramanian, D. James, Y. Zhao, J. Koralek, J. Brayshaw, C. Kupitz, C. Conrad, S. Roy-Chowdhury, J. D. Coe, M. Metz, P. L. Xavier, T. D. Grant, J. E. Koglin, G. Ketawala, R. Fromme, V.  rajer, R. Henning, J. C. H. Spence, A. Ourmazd, P. Schwander, U. Weierstall, M. Frank, P. Fromme, A. Barty, H. N. Chapman, K. Moffat, J. J. van Thor, M. Schmidt
Citation Pande, K. et al., 2016. Femtosecond structural dynamics drives the trans/cis isomerization in photoactive yellow protein. Science, 352(6286), pp.725-729.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Jinghui Luo, Katherine A. Muratore, Edgar A. Arriaga, Alexandra Ros
Citation Luo, J. et al., 2016. Deterministic Absolute Negative Mobility for Micro- and Submicrometer Particles Induced in a Microfluidic Device. Analytical Chemistry, 88(11), pp.5920-5927.
Type Journal-article
Authors Jose M. Martin-Garcia, Chelsie E. Conrad, Jesse Coe, Shatabdi Roy-Chowdhury, Petra Fromme
Citation Martin-Garcia, J.M. et al., 2016. Serial femtosecond crystallography: A revolution in structural biology. Archives of Biochemistry and Biophysics, 602, pp.32-47.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Christopher D.M. Hutchison, Marius Kaucikas, Jason Tenboer, Christopher Kupitz, Keith Moffat, Marius Schmidt, Jasper J. van Thor
Citation Hutchison, C.D.M. et al., 2016. Photocycle populations with femtosecond excitation of crystalline photoactive yellow protein. Chemical Physics Letters, 654, pp.63-71.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Hongnan Cao, Kemin Tan, Fengbin Wang, Lance Bigelow, Ragothaman M. Yennamalli, Robert Jedrzejczak, Gyorgy Babnigg, Craig A. Bingman, Andrzej Joachimiak, Madan K. Kharel, Shanteri Singh, Jon S. Thorson, George N. Phillips
Citation Cao, H. et al., 2016. Structural dynamics of a methionine γ-lyase for calicheamicin biosynthesis: Rotation of the conserved tyrosine stacking with pyridoxal phosphate. Structural Dynamics, 3(3), p.034702.
Type Journal-article
Authors Ray Yu-Ruei Wang, Yifan Song, Benjamin Barad, Yifan Cheng, James Fraser, Frank DiMaio
Citation Wang, R.Y.-R. et al., 2016. Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta.
Type Posted-content
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors R. Fung, A. Ourmazd, A. M. Hanna, O. Vendrell, S. Ramakrishna, T. Seideman, R. Santra, A. Ourmazd
Citation Fung, R. et al., 2016. Dynamics from noisy data with extreme timing uncertainty. Nature, 532(7600), pp.471-475.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Hilary P. Stevenson, Guowu Lin, Christopher O. Barnes, Ieva Sutkeviciute, Troy Krzysiak, Simon C. Weiss, Shelley Reynolds, Ying Wu, Veeranagu Nagarajan, Alexander M. Makhov, Robert Lawrence, Emily Lamm, Lisa Clark, Timothy J. Gardella, Brenda G. Hogue, Craig M. Ogata, Jinwoo Ahn, Angela M. Gronenborn, James F. Conway, Jean-Pierre Vilardaga, Aina E. Cohen, Guillermo Calero
Citation Stevenson, H.P. et al., 2016. Transmission electron microscopy for the evaluation and optimization of crystal growth. Acta Crystallographica Section D Structural Biology, 72(5), pp.603-615.
Type Journal-article
Citation Anon, 2016. Correction for Thomaston et al., High-resolution structures of the M2 channel from influenza A virus reveal dynamic pathways for proton stabilization and transduction. Proceedings of the National Academy of Sciences, 113(18), pp.E2548-E2548.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors David Mavor, Kyle Barlow, Samuel Thompson, Benjamin A Barad, Alain R Bonny, Clinton L Cario, Garrett Gaskins, Zairan Liu, Laura Deming, Seth D Axen, Elena Caceres, Weilin Chen, Adolfo Cuesta, Rachel E Gate, Evan M Green, Kaitlin R Hulce, Weiyue Ji, Lillian R Kenner, Bruk Mensa, Leanna S Morinishi, Steven M Moss, Marco Mravic, Ryan K Muir, Stefan Niekamp, Chimno I Nnadi, Eugene Palovcak, Erin M Poss, Tyler D Ross, Eugenia C Salcedo, Stephanie K See, Meena Subramaniam, Allison W Wong, Jennifer Li, Kurt S Thorn, Shane Ó Conchúir, Benjamin P Roscoe, Eric D Chow, Joseph L DeRisi, Tanja Kortemme, Daniel N Bolon, James S Fraser
Citation Mavor, D. et al., 2016. Determination of ubiquitin fitness landscapes under different chemical stresses in a classroom setting. eLife, 5.
Type Journal-article
Authors Igor S. Tolokh, Aleksander V. Drozdetski, Lois Pollack, Nathan A. Baker, Alexey V. Onufriev
Citation Tolokh, I.S. et al., 2016. Multi-shell model of ion-induced nucleic acid condensation. The Journal of Chemical Physics, 144(15), p.155101.
Type Journal-article
Authors Yujie Chen, Lois Pollack
Citation Chen, Y. & Pollack, L., 2016. SAXS studies of RNA: structures, dynamics, and interactions with partners. WIREs RNA.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors X. Edward Zhou, Xiang Gao, Anton Barty, Yanyong Kang, Yuanzheng He, Wei Liu, Andrii Ishchenko, Thomas A. White, Oleksandr Yefanov, Gye Won Han, Qingping Xu, Parker W. de Waal, Kelly M. Suino-Powell, Sébastien Boutet, Garth J. Williams, Meitian Wang, Dianfan Li, Martin Caffrey, Henry N. Chapman, John C.H. Spence, Petra Fromme, Uwe Weierstall, Raymond C. Stevens, Vadim Cherezov, Karsten Melcher, H. Eric Xu
Citation Zhou, X.E. et al., 2016. X-ray laser diffraction for structure determination of the rhodopsin-arrestin complex. Sci. Data, 3, p.160021.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Maia Azubel, Roger D. Kornberg
Citation Azubel, M. & Kornberg, R.D., 2016. Synthesis of Water-Soluble, Thiolate-Protected Gold Nanoparticles Uniform in Size. Nano Letters, 16(5), pp.3348-3351.
Type Journal-article
Authors Joshua M. Tokuda, Suzette A. Pabit, Lois Pollack
Citation Tokuda, J.M., Pabit, S.A. & Pollack, L., 2016. Protein-DNA and ion-DNA interactions revealed through contrast variation SAXS. Biophysical Reviews, 8(2), pp.139-149.
Type Journal-article
Authors Thomas A. White, Valerio Mariani, Wolfgang Brehm, Oleksandr Yefanov, Anton Barty, Kenneth R. Beyerlein, Fedor Chervinskii, Lorenzo Galli, Cornelius Gati, Takanori Nakane, Alexandra Tolstikova, Keitaro Yamashita, Chun Hong Yoon, Kay Diederichs, Henry N. Chapman
Citation White, T.A. et al., 2016. Recent developments in CrystFEL . J Appl Crystallogr, 49(2), pp.680-689.
Type Journal-article
Authors Andrew H. Van Benschoten, Lin Liu, Ana Gonzalez, Aaron S. Brewster, Nicholas K. Sauter, James S. Fraser, Michael E. Wall
Citation Van Benschoten, A.H. et al., 2016. Measuring and modeling diffuse scattering in protein X-ray crystallography. Proceedings of the National Academy of Sciences, 113(15), pp.4069-4074.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Matthew A. Coleman, Jenny A. Cappuccio, Craig D. Blanchette, Tingjuan Gao, Erin S. Arroyo, Angela K. Hinz, Feliza A. Bourguet, Brent Segelke, Paul D. Hoeprich, Thomas Huser, Ted A. Laurence, Vladimir L. Motin, Brett A. Chromy
Citation Coleman, M.A. et al., 2016. Expression and Association of the Yersinia pestis Translocon Proteins, YopB and YopD, Are Facilitated by Nanolipoprotein Particles M. Skurnik, ed. PLoS ONE, 11(3), p.e0150166.
Type Journal-article
Authors Sarah A. Kessans, Mark D. Linhart, Lydia R. Meador, Jacquelyn Kilbourne, Brenda G. Hogue, Petra Fromme, Nobuyuki Matoba, Tsafrir S. Mor
Citation Kessans, S.A. et al., 2016. Immunological Characterization of Plant-Based HIV-1 Gag/Dgp41 Virus-Like Particles M. L. Alvarez, ed. PLoS ONE, 11(3), p.e0151842.
Type Journal-article
Authors Salah Awel, Richard A. Kirian, Niko Eckerskorn, Max Wiedorn, Daniel A. Horke, Andrei V. Rode, Jochen Küpper, Henry N. Chapman
Citation Awel, S. et al., 2016. Visualizing aerosol-particle injection for diffractive-imaging experiments. Optics Express, 24(6), p.6507.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Matthias Fuchs
Citation Fuchs, M., 2016. Anomalous Nonlinear X-ray Compton Scattering. High-Brightness Sources and Light-Driven Interactions.
Type Proceedings-article
Authors Peter A. Meyer, Stephanie Socias, Jason Key, Elizabeth Ransey, Emily C. Tjon, Alejandro Buschiazzo, Ming Lei, Chris Botka, James Withrow, David Neau, Kanagalaghatta Rajashankar, Karen S. Anderson, Richard H. Baxter, Stephen C. Blacklow, Titus J. Boggon, Alexandre M. J. J. Bonvin, Dominika Borek, Tom J. Brett, Amedeo Caflisch, Chung-I Chang, Walter J. Chazin, Kevin D. Corbett, Michael S. Cosgrove, Sean Crosson, Sirano Dhe-Paganon, Enrico Di Cera, Catherine L. Drennan, Michael J. Eck, Brandt F. Eichman, Qing R. Fan, Adrian R. Ferré-D'Amaré, J. Christopher Fromme, K. Christopher Garcia, Rachelle Gaudet, Peng Gong, Stephen C. Harrison, Ekaterina E. Heldwein, Zongchao Jia, Robert J. Keenan, Andrew C. Kruse, Marc Kvansakul, Jason S. McLellan, Yorgo Modis, Yunsun Nam, Zbyszek Otwinowski, Emil F. Pai, Pedro José Barbosa Pereira, Carlo Petosa, C. S. Raman, Tom A. Rapoport, Antonina Roll-Mecak, Michael K. Rosen, Gabby Rudenko, Joseph Schlessinger, Thomas U. Schwartz, Yousif Shamoo, Holger Sondermann, Yizhi J. Tao, Niraj H. Tolia, Oleg V. Tsodikov, Kenneth D. Westover, Hao Wu, Ian Foster, James S. Fraser, Filipe R. N C. Maia, Tamir Gonen, Tom Kirchhausen, Kay Diederichs, Mercè Crosas, Piotr Sliz
Citation Meyer, P.A. et al., 2016. Data publication with the structural biology data grid supports live analysis. Nature Communications, 7, p.10882.
Type Journal-article
Authors Christopher O. Barnes, Elena G. Kovaleva, Xiaofeng Fu, Hilary P. Stevenson, Aaron S. Brewster, Daniel P. DePonte, Elizabeth L. Baxter, Aina E. Cohen, Guillermo Calero
Citation Barnes, C.O. et al., 2016. Assessment of microcrystal quality by transmission electron microscopy for efficient serial femtosecond crystallography. Archives of Biochemistry and Biophysics, 602, pp.61-68.
Type Journal-article
Authors F.X. Kärtner, F. Ahr, A.-L. Calendron, H. Çankaya, S. Carbajo, G. Chang, G. Cirmi, K. Dörner, U. Dorda, A. Fallahi, A. Hartin, M. Hemmer, R. Hobbs, Y. Hua, W.R. Huang, R. Letrun, N. Matlis, V. Mazalova, O.D. Mücke, E. Nanni, W. Putnam, K. Ravi, F. Reichert, I. Sarrou, X. Wu, A. Yahaghi, H. Ye, L. Zapata, D. Zhang, C. Zhou, R.J.D. Miller, K.K. Berggren, H. Graafsma, A. Meents, R.W. Assmann, H.N. Chapman, P. Fromme
Citation Kärtner, F.X. et al., 2016. AXSIS: Exploring the frontiers in attosecond X-ray science, imaging and spectroscopy. Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, 829, pp.24-29.
Type Journal-article
Authors Bahige G. Abdallah, Shatabdi Roy-Chowdhury, Raimund Fromme, Petra Fromme, Alexandra Ros
Citation Abdallah, B.G. et al., 2016. Protein Crystallization in an Actuated Microfluidic Nanowell Device. Crystal Growth & Design.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Debra T. Hansen, Mark D. Robida, Felicia M. Craciunescu, Andrey V. Loskutov, Katerina Dörner, John-Charles Rodenberry, Xiao Wang, Tien L. Olson, Hetal Patel, Petra Fromme, Kathryn F. Sykes
Citation Hansen, D.T. et al., 2016. Polyclonal Antibody Production for Membrane Proteins via Genetic Immunization. Scientific Reports, 6, p.21925.
Type Journal-article
Authors M. Uddin
Citation Uddin, M., 2016. Reconstructing three-dimensional helical structure with an X-ray free electron laser. Journal of Applied Crystallography, 49(2), pp.450-456.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Lu Han, Shanteri Singh, Jon S. Thorson, George N. Phillips
Citation Han, L. et al., 2016. Loop dynamics of thymidine diphosphate-rhamnose 3′-O-methyltransferase (CalS11), an enzyme in calicheamicin biosynthesis. Structural Dynamics, 3(1), p.012004.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Ming-Yue Lee, Nilkanth Patel, Vsevolod Katritch, Raymond C. Stevens, Vadim Cherezov
Citation Lee, M.-Y. et al., 2016. Structural Studies of the Human Kappa Opioid Receptor Active State Conformations. Biophysical Journal, 110(3), p.38a-39a.
Type Journal-article
Authors Premila P. Samuel, William Ou, George N. Phillips, John S. Olson
Citation Samuel, P.P. et al., 2016. An in Vitro Investigation of Globin Folding and Expression. Biophysical Journal, 110(3), p.209a-210a.
Type Journal-article
Authors Andrii Ishchenko, Vadim Cherezov, Wei Liu
Citation Ishchenko, A., Cherezov, V. & Liu, W., 2016. Preparation and Delivery of Microcrystals in Lipidic Cubic Phase for Serial Femtosecond Crystallography. Biophysical Journal, 110(3), p.59a.
Type Journal-article
Authors Joachim Frank, Abbas Ourmazd
Citation Frank, J. & Ourmazd, A., 2016. Continuous Changes in Structure Mapped by Manifold Embedding of Single-Particle Data in Cryo-EM. Methods.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Kartik Ayyer, Oleksandr M. Yefanov, Dominik Oberthür, Shatabdi Roy-Chowdhury, Lorenzo Galli, Valerio Mariani, Shibom Basu, Jesse Coe, Chelsie E. Conrad, Raimund Fromme, Alexander Schaffer, Katerina Dörner, Daniel James, Christopher Kupitz, Markus Metz, Garrett Nelson, Paulraj Lourdu Xavier, Kenneth R. Beyerlein, Marius Schmidt, Iosifina Sarrou, John C. H. Spence, Uwe Weierstall, Thomas A. White, Jay-How Yang, Yun Zhao, Mengning Liang, Andrew Aquila, Mark S. Hunter, Joseph S. Robinson, Jason E. Koglin, Sébastien Boutet, Petra Fromme, Anton Barty, Henry N. Chapman
Citation Ayyer, K. et al., 2016. Macromolecular diffractive imaging using imperfect crystals. Nature, 530(7589), pp.202-206.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Jie Ding, Robert M. Lawrence, Paul V. Jones, Brenda G. Hogue, Mark A. Hayes
Citation Ding, J. et al., 2016. Concentration of Sindbis virus with optimized gradient insulator-based dielectrophoresis. Analyst.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Peter Cimermancic, Patrick Weinkam, T. Justin Rettenmaier, Leon Bichmann, Daniel A. Keedy, Rahel A. Woldeyes, Dina Schneidman-Duhovny, Omar N. Demerdash, Julie C. Mitchell, James A. Wells, James S. Fraser, Andrej Sali
Citation Cimermancic, P. et al., 2016. CryptoSite: Expanding the Druggable Proteome by Characterization and Prediction of Cryptic Binding Sites. Journal of Molecular Biology, 428(4), pp.709-719.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors K. R. Ferguson, M. Bucher, T. Gorkhover, S. Boutet, H. Fukuzawa, J. E. Koglin, Y. Kumagai, A. Lutman, A. Marinelli, M. Messerschmidt, K. Nagaya, J. Turner, K. Ueda, G. J. Williams, P. H. Bucksbaum, C. Bostedt
Citation Ferguson, K.R. et al., 2016. Transient lattice contraction in the solid-to-plasma transition. Science Advances, 2(1), pp.e1500837-e1500837.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Saša Bajt, Mauro Prasciolu, Andrew J. Morgan, Henry N. Chapman, Jacek Krzywinski, Andrzej Andrejczuk
Citation Bajt, S. et al., 2016. One dimensional focusing with high numerical aperture multilayer Laue lens.
Type Proceedings-article
Authors Richard A. Kirian, Henry N. Chapman
Citation Kirian, R.A. & Chapman, H.N., 2015. Imaging of Objects by Coherent Diffraction of X-Ray Free-Electron Laser Pulses. Synchrotron Light Sources and Free-Electron Lasers, pp.1-55.
Type Book-chapter
Authors Tais Gorkhover, Sebastian Schorb, Ryan Coffee, Marcus Adolph, Lutz Foucar, Daniela Rupp, Andrew Aquila, John D. Bozek, Sascha W. Epp, Benjamin Erk, Lars Gumprecht, Lotte Holmegaard, Andreas Hartmann, Robert Hartmann, Günter Hauser, Peter Holl, Andre Hömke, Per Johnsson, Nils Kimmel, Kai-Uwe Kühnel, Marc Messerschmidt, Christian Reich, Arnaud Rouzée, Benedikt Rudek, Carlo Schmidt, Joachim Schulz, Heike Soltau, Stephan Stern, Georg Weidenspointner, Bill White, Jochen Küpper, Lothar Strüder, Ilme Schlichting, Joachim Ullrich, Daniel Rolles, Artem Rudenko, Thomas Möller, Christoph Bostedt
Citation Gorkhover, T. et al., 2016. Femtosecond and nanometre visualization of structural dynamics in superheated nanoparticles. Nature Photon, 10(2), pp.93-97.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Jesse Coe, Petra Fromme
Citation Coe, J. & Fromme, P., 2016. Serial femtosecond crystallography opens new avenues for Structural Biology. PPL, 23(3), pp.255-272.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Maria L. Sushko, Dennis G. Thomas, Suzette A. Pabit, Lois Pollack, Alexey V. Onufriev, Nathan A. Baker
Citation Sushko, M.L. et al., 2016. The Role of Correlation and Solvation in Ion Interactions with B-DNA. Biophysical Journal, 110(2), pp.315-326.
Type Journal-article
Authors Arjen J. Jakobi, Daniel M. Passon, Kèvin Knoops, Francesco Stellato, Mengning Liang, Thomas A. White, Thomas Seine, Marc Messerschmidt, Henry N. Chapman, Matthias Wilmanns
Citation Jakobi, A.J. et al., 2016. In cellulo serial crystallography of alcohol oxidase crystals inside yeast cells . IUCrJ, 3(2).
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Irem Altan, Patrick Charbonneau, Edward H. Snell
Citation Altan, I., Charbonneau, P. & Snell, E.H., 2016. Computational crystallization. Archives of Biochemistry and Biophysics.
Type Journal-article
Authors Leonard M. G. Chavas, Sasa Bajt, Lars Gumprecht, Henry N. Chapman
Citation Chavas, L.M.G. et al., 2015. Serial femtosecond crystallography on in vivo grown crystals at SACLA - developments and results . Acta Cryst Sect A Found Adv, 71(a1), pp.s148-s148.
Type Journal-article
Authors Diana C. F. Monteiro, Vijay Patel, Christopher P. Bartlett, Shingo Nozaki, Thomas D. Grant, James A. Gowdy, Gary S. Thompson, Arnout P. Kalverda, Edward H. Snell, Hironori Niki, Arwen R. Pearson, Michael E. Webb
Citation Monteiro, D.C.F. et al., 2015. Towards a generalised approach for the time-resolved crystallographic study of enzymes. Acta Cryst Sect A Found Adv, 71(a1), pp.s25-s25.
Type Journal-article
Authors Joe P. J. Chen, Rick A. Kirian, Richard J. Bean, Kenneth R. Beyerlein, Miriam Barthelmess, Chun Hong Yoon, Fenglin Wang, Flavio Capotondi, Emanuele Pedersoli, Anton Barty, Henry N. Chapman, Philip J. Bones, Romain D. Arnal, Rick P. Millane, John C. H. Spence
Citation Chen, J.P.J. et al., 2015. Phase retrieval for randomly terminated finite crystals. Acta Cryst Sect A Found Adv, 71(a1), pp.s17-s17.
Type Journal-article
Authors Kartik Ayyer, Oleksandr M. Yefanov, Dominik Oberthuer, Shatabdi Chowdhury, Lorenzo Galli, Valerio Mariani, Shibom Basu, Jesse Coe, Chelsie E. Conrad, Raimund Fromme, Katerina Doerner, Matthias Frank, Daniel James, Christopher Kupitz, Markus Metz, Garrett Nelson, Xavier L. Paulraj, Kenneth Beyerlein, Marius Schmidt, Iosifina Sarrou, John C. H. Spence, Uwe Weierstall, Thomas A. White, Jayhow Yang, Nadia A. Zatsepin, Yun Zhao, Mengning Liang, Andrew Aquila, Mark S. Hunter, Joseph S. Robinson, Jason E. Koglin, Sébastien Boutet, Petra Fromme, Anton Barty, Henry N. Chapman
Citation Ayyer, K. et al., 2015. Improving resolution in serial crystallography. Acta Cryst Sect A Found Adv, 71(a1), pp.s16-s16.
Type Journal-article
Authors Thomas R. Schneider, Gleb Bourenkov, Cornelius Gati, Henry N. Chapman, Lars Redecke, Ulrich Zander, José A. Marquez, Florent Cipriani, Thomas R. Schneider
Citation Schneider, T.R. et al., 2015. Serial synchrotron crystallography experiments at EMBL beamline P14 at PETRA III. Acta Cryst Sect A Found Adv, 71(a1), pp.s12-s12.
Type Journal-article
Authors Dianfan Li, Phillip J. Stansfeld, Mark S. P. Sansom, Aaron Keogh, Lutz Vogeley, Nicole Howe, Joseph A. Lyons, David Aragao, Petra Fromme, Raimund Fromme, Shibom Basu, Ingo Grotjohann, Christopher Kupitz, Kimberley Rendek, Uwe Weierstall, Nadia A. Zatsepin, Vadim Cherezov, Wei Liu, Sateesh Bandaru, Niall J. English, Cornelius Gati, Anton Barty, Oleksandr Yefanov, Henry N. Chapman, Kay Diederichs, Marc Messerschmidt, Sébastien Boutet, Garth J. Williams, M. Marvin Seibert, Martin Caffrey
Citation Li, D. et al., 2015. Ternary structure reveals mechanism of a membrane diacylglycerol kinase. Nat Comms, 6, p.10140.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Julie L. Sutton, Lois Pollack
Citation Sutton, J.L. & Pollack, L., 2015. Tuning RNA Flexibility with Helix Length and Junction Sequence. Biophysical Journal, 109(12), pp.2644-2653.
Type Journal-article
Authors Niko Eckerskorn, Richard Bowman, Richard A. Kirian, Salah Awel, Max Wiedorn, Jochen Küpper, Miles J. Padgett, Henry N. Chapman, Andrei V. Rode
Citation Eckerskorn, N. et al., 2015. Optically Induced Forces Imposed in an Optical Funnel on a Stream of Particles in Air or Vacuum. Physical Review Applied, 4(6).
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Marius Schmidt
Citation Schmidt, M., 2015. Time-Resolved Crystallography at X-ray Free Electron Lasers and Synchrotron Light Sources. Synchrotron Radiation News, 28(6), pp.25-30.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors K. R. Beyerlein, L. Adriano, M. Heymann, R. Kirian, J. Knoška, F. Wilde, H. N. Chapman, S. Bajt
Citation Beyerlein, K.R. et al., 2015. Ceramic micro-injection molded nozzles for serial femtosecond crystallography sample delivery. Review of Scientific Instruments, 86(12), p.125104.
Type Journal-article
Authors Andrew H Van Benschoten, Lin Liu, Ana Gonzalez, Aaron S Brewster, Nicholas K Sauter, James S Fraser, Michael Wall
Citation Van Benschoten, A.H. et al., 2015. Measuring and modeling diffuse scattering in protein X-ray crystallography.
Type Posted-content
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Alexander Heifetz, Ewa I. Chudyk, Laura Gleave, Matteo Aldeghi, Vadim Cherezov, Dmitri G. Fedorov, Philip C. Biggin, Mike J. Bodkin
Citation Heifetz, A. et al., 2016. The Fragment Molecular Orbital Method Reveals New Insight into the Chemical Nature of GPCR-Ligand Interactions. Journal of Chemical Information and Modeling, 56(1), pp.159-172.
Type Journal-article
Authors Kate E. Helmich, Jose Henrique Pereira, Daniel L. Gall, Richard A. Heins, Ryan P. McAndrew, Craig Bingman, Kai Deng, Keefe C. Holland, Daniel R. Noguera, Blake A. Simmons, Kenneth L. Sale, John Ralph, Timothy J. Donohue, Paul D. Adams, George N. Phillips
Citation Helmich, K.E. et al., 2015. Structural Basis of Stereospecificity in the Bacterial Enzymatic Cleavage of β-Aryl Ether Bonds in Lignin. J. Biol. Chem., 291(10), pp.5234-5246.
Type Journal-article
Authors Elizabeth L. Baxter, Laura Aguila, Roberto Alonso-Mori, Christopher O. Barnes, Christopher A. Bonagura, Winnie Brehmer, Axel T. Brunger, Guillermo Calero, Tom T. Caradoc-Davies, Ruchira Chatterjee, William F. Degrado, James S. Fraser, Mohamed Ibrahim, Jan Kern, Brian K. Kobilka, Andrew C. Kruse, Karl M. Larsson, Heinrik T. Lemke, Artem Y. Lyubimov, Aashish Manglik, Scott E. McPhillips, Erik Norgren, Siew S. Pang, S. M. Soltis, Jinhu Song, Jessica Thomaston, Yingssu Tsai, William I. Weis, Rahel A. Woldeyes, Vittal Yachandra, Junko Yano, Athina Zouni, Aina E. Cohen
Citation Baxter, E.L. et al., 2016. High-density grids for efficient data collection from multiple crystals. Acta Crystallogr Sect D Struct Biol, 72(1), pp.2-11.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Raymond G Sierra, Cornelius Gati, Hartawan Laksmono, E Han Dao, Sheraz Gul, Franklin Fuller, Jan Kern, Ruchira Chatterjee, Mohamed Ibrahim, Aaron S Brewster, Iris D Young, Tara Michels-Clark, Andrew Aquila, Mengning Liang, Mark S Hunter, Jason E Koglin, Sébastien Boutet, Elia A Junco, Brandon Hayes, Michael J Bogan, Christina Y Hampton, Elisabetta V Puglisi, Nicholas K Sauter, Claudiu A Stan, Athina Zouni, Junko Yano, Vittal K Yachandra, S Michael Soltis, Joseph D Puglisi, Hasan DeMirci
Citation Sierra, R.G. et al., 2015. Concentric-flow electrokinetic injector enables serial crystallography of ribosome and photosystem II. Nat Meth.
Type Journal-article
Authors Petra Fromme
Citation Fromme, P., 2015. XFELs open a new era in structural chemical biology. Nat Chem Biol, 11(12), pp.895-899.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Lin Gan, Fernanda Camacho-Alanis, Alexandra Ros
Citation Gan, L., Camacho-Alanis, F. & Ros, A., 2015. Polarizability of Six-Helix Bundle and Triangle DNA Origami and Their Escape Characteristics from a Dielectrophoretic Trap. Anal. Chem., 87(24), pp.12059-12064.
Type Journal-article
Authors Kyle P. Eagen, Tom A. Hartl, Roger D. Kornberg
Citation Eagen, K.P., Hartl, T.A. & Kornberg, R.D., 2015. Stable Chromosome Condensation Revealed by Chromosome Conformation Capture. Cell, 163(4), pp.934-946.
Type Journal-article
Authors Yahli Lorch, Roger D. Kornberg
Citation Lorch, Y. & Kornberg, R.D., 2015. Chromatin-remodeling and the initiation of transcription. Quarterly Reviews of Biophysics, 48(04), pp.465-470.
Type Journal-article
Authors Rebecca L. Miller, Aaron A. Thompson, Claudio Trapella, Remo Guerrini, Davide Malfacini, Nilkanth Patel, Gye Won Han, Vadim Cherezov, Girolamo Caló, Vsevolod Katritch, Raymond C. Stevens
Citation Miller, R.L. et al., 2015. The Importance of Ligand-Receptor Conformational Pairs in Stabilization: Spotlight on the N/OFQ G Protein-Coupled Receptor. Structure, 23(12), pp.2291-2299.
Type Journal-article
Authors Jessica L. Thomaston, Mercedes Alfonso-Prieto, Rahel A. Woldeyes, James S. Fraser, Michael L. Klein, Giacomo Fiorin, William F. DeGrado
Citation Thomaston, J.L. et al., 2015. High-resolution structures of the M2 channel from influenza A virus reveal dynamic pathways for proton stabilization and transduction. Proc Natl Acad Sci USA, 112(46), pp.14260-14265.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Andrey Bogorodskiy, Fedor Frolov, Alexey Mishin, Ekaterina Round, Vitaly Polovinkin, Vadim Cherezov, Valentin Gordeliy, Georg Büldt, Thomas Gensch, Valentin Borshchevskiy
Citation Bogorodskiy, A. et al., 2015. Nucleation and Growth of Membrane Protein CrystalsIn Meso--A Fluorescence Microscopy Study. Crystal Growth & Design, 15(12), pp.5656-5660.
Type Journal-article
Authors Jeffrey D. Rudolf, Lance Bigelow, Changsoo Chang, Marianne E. Cuff, Jeremy R. Lohman, Chin-Yuan Chang, Ming Ma, Dong Yang, Shonda Clancy, Gyorgy Babnigg, Andrzej Joachimiak, George N. Phillips, Ben Shen
Citation Rudolf, J.D. et al., 2015. Crystal Structure of the Zorbamycin-Binding Protein ZbmA, the Primary Self-Resistance Element in Streptomyces flavoviridis ATCC21892 . Biochemistry, 54(45), pp.6842-6851.
Type Journal-article
Authors Daniel A. Keedy, James S. Fraser, Henry van den Bedem
Citation Keedy, D.A., Fraser, J.S. & van den Bedem, H., 2015. Exposing Hidden Alternative Backbone Conformations in X-ray Crystallography Using qFit A. Shehu, ed. PLoS Comput Biol, 11(10), p.e1004507.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Oleksandr Yefanov, Valerio Mariani, Cornelius Gati, Thomas A. White, Henry N. Chapman, Anton Barty
Citation Yefanov, O. et al., 2015. Accurate determination of segmented X-ray detector geometry. Optics Express, 23(22), p.28459.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Kenji Murakami, Kuang-Lei Tsai, Nir Kalisman, David A. Bushnell, Francisco J. Asturias, Roger D. Kornberg
Citation Murakami, K. et al., 2015. Structure of an RNA polymerase II preinitiation complex. Proceedings of the National Academy of Sciences, 112(44), pp.13543-13548.
Type Journal-article
Authors Richard A. Kirian, Henry N. Chapman
Citation Kirian, R.A. & Chapman, H.N., 2015. Imaging of Objects by Coherent Diffraction of X-Ray FEL Pulses. Synchrotron Light Sources and Free-Electron Lasers, pp.1-55.
Type Book-chapter
Authors Daniel A Keedy, Lillian R Kenner, Matthew Warkentin, Rahel A Woldeyes, Jesse B Hopkins, Michael C Thompson, Aaron S Brewster, Andrew H Van Benschoten, Elizabeth L Baxter, Monarin Uervirojnangkoorn, Scott E McPhillips, Jinhu Song, Roberto Alonso-Mori, James M Holton, William I Weis, Axel T Brunger, S Michael Soltis, Henrik Lemke, Ana Gonzalez, Nicholas K Sauter, Aina E Cohen, Henry van den Bedem, Robert E Thorne, James S Fraser
Citation Keedy, D.A. et al., 2015. Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography. eLife, 4.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Jeremy R. Lohman, Ming Ma, Jerzy Osipiuk, Boguslaw Nocek, Youngchang Kim, Changsoo Chang, Marianne Cuff, Jamey Mack, Lance Bigelow, Hui Li, Michael Endres, Gyorgy Babnigg, Andrzej Joachimiak, George N. Phillips, Ben Shen
Citation Lohman, J.R. et al., 2015. Structural and evolutionary relationships of "AT-less" type I polyketide synthase ketosynthases. Proceedings of the National Academy of Sciences, 112(41), pp.12693-12698.
Type Journal-article
Authors Haitao Zhang, Hamiyet Unal, Russell Desnoyer, Gye Won Han, Nilkanth Patel, Vsevolod Katritch, Sadashiva S. Karnik, Vadim Cherezov, Raymond C. Stevens
Citation Zhang, H. et al., 2015. Structural Basis for Ligand Recognition and Functional Selectivity at Angiotensin Receptor. J. Biol. Chem., 290(49), pp.29127-29139.
Type Journal-article
Authors Lorenzo Galli, Sang-Kil Son, Thomas R. M. Barends, Thomas A. White, Anton Barty, Sabine Botha, Sébastien Boutet, Carl Caleman, R. Bruce Doak, Max H. Nanao, Karol Nass, Robert L. Shoeman, Nicusor Timneanu, Robin Santra, Ilme Schlichting, Henry N. Chapman
Citation Galli, L. et al., 2015. Towards phasing using high X-ray intensity. IUCrJ, 2(6), pp.627-634.
Type Journal-article
Authors Philip J Robinson, Michael J Trnka, Riccardo Pellarin, Charles H Greenberg, David A Bushnell, Ralph Davis, Alma L Burlingame, Andrej Sali, Roger D Kornberg
Citation Robinson, P.J. et al., 2015. Molecular architecture of the yeast Mediator complex. eLife, 4.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors J C H Spence, G Subramanian, P Musumeci
Citation Spence, J.C.H., Subramanian, G. & Musumeci, P., 2015. Hollow cone illumination for fast TEM, and outrunning damage with electrons. Journal of Physics B: Atomic, Molecular and Optical Physics, 48(21), p.214003.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Joe P. J. Chen, Richard A. Kirian, Kenneth R. Beyerlein, Richard J. Bean, Andrew J. Morgan, Oleksandr M. Yefanov, Romain D. Arnal, David H. Wojtas, Phil J. Bones, Henry N. Chapman, John C. H. Spence, Rick P. Millane
Citation Chen, J.P.J. et al., 2015. Image reconstruction in serial femtosecond nanocrystallography using x-ray free-electron lasers Philip J. Bones, M. A. Fiddy, & R. P. Millane, eds. Image Reconstruction from Incomplete Data VIII.
Type Proceedings-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Thomas Kierspel, Joss Wiese, Terry Mullins, Joseph Robinson, Andy Aquila, Anton Barty, Richard Bean, Rebecca Boll, Sébastien Boutet, Philip Bucksbaum, Henry N Chapman, Lauge Christensen, Alan Fry, Mark Hunter, Jason E Koglin, Mengning Liang, Valerio Mariani, Andrew Morgan, Adi Natan, Vladimir Petrovic, Daniel Rolles, Artem Rudenko, Kirsten Schnorr, Henrik Stapelfeldt, Stephan Stern, Jan Thøgersen, Chun Hong Yoon, Fenglin Wang, Sebastian Trippel, Jochen Küpper
Citation Kierspel, T. et al., 2015. Strongly aligned gas-phase molecules at free-electron lasers. Journal of Physics B: Atomic, Molecular and Optical Physics, 48(20), p.204002.
Type Journal-article
Authors W. Wierzchowski, K. Wieteska, R. Sobierajski, D. Klinger, J. Pełka, D. Żymierska, C. Paulmann, S.P. Hau-Riege, R.A. London, A. Graf, T. Burian, J. Chalupský, J. Gaudin, J. Krzywinski, S. Moeller, M. Messerschmidt, J. Bozek, Ch. Bostedt
Citation Wierzchowski, W. et al., 2015. Synchrotron topographic evaluation of strain around craters generated by irradiation with X-ray pulses from free electron laser with different intensities. Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, 364, pp.20-26.
Type Journal-article
Authors Jose A. Rodriguez, Magdalena I. Ivanova, Michael R. Sawaya, Duilio Cascio, Francis E. Reyes, Dan Shi, Smriti Sangwan, Elizabeth L. Guenther, Lisa M. Johnson, Meng Zhang, Lin Jiang, Mark A. Arbing, Brent L. Nannenga, Johan Hattne, Julian Whitelegge, Aaron S. Brewster, Marc Messerschmidt, Sébastien Boutet, Nicholas K. Sauter, Tamir Gonen, David S. Eisenberg
Citation Rodriguez, J.A. et al., 2015. Structure of the toxic core of α-synuclein from invisible crystals. Nature, 525(7570), pp.486-490.
Type Journal-article
Authors J Hoszowska, J Szlachetko, J-Cl Dousse, W Błachucki, Y Kayser, Ch Milne, M Pajek, S Boutet, M Messerschmidt, G Williams, C T Chantler
Citation Hoszowska, J. et al., 2015. X-ray two-photon absorption with high fluence XFEL pulses. Journal of Physics: Conference Series, 635(10), p.102009.
Type Journal-article
Authors Furqan M. Fazal, Cong A. Meng, Kenji Murakami, Roger D. Kornberg, Steven M. Block
Citation Fazal, F.M. et al., 2015. Real-time observation of the initiation of RNA polymerase II transcription. Nature, 525(7568), pp.274-277.
Type Journal-article
Authors Matthias Fuchs, Mariano Trigo, Jian Chen, Shambhu Ghimire, Sharon Shwartz, Michael Kozina, Mason Jiang, Thomas Henighan, Crystal Bray, Georges Ndabashimiye, Philip H. Bucksbaum, Yiping Feng, Sven Herrmann, Gabriella A. Carini, Jack Pines, Philip Hart, Christopher Kenney, Serge Guillet, Sébastien Boutet, Garth J. Williams, Marc Messerschmidt, M. Marvin Seibert, Stefan Moeller, Jerome B. Hastings, David A. Reis
Citation Fuchs, M. et al., 2015. Anomalous nonlinear X-ray Compton scattering. Nature Physics, 11(11), pp.964-970.
Type Journal-article
Authors David Mavor, James Fraser,
Citation Mavor, D. & Fraser, J., 2015. Determination of Ubiquitin Fitness Landscapes Under Different Chemical Stresses in a Classroom Setting.
Type Posted-content
Authors Niko Eckerskorn, Richard Bowman, Richard A. Kirian, Salah Awel, Max Wiedorn, Jochen Küpper, Miles J. Padgett, Henry N. Chapman, Andrei V. Rode
Citation Eckerskorn, N. et al., 2015. Toward steering a jet of particles into an x-ray beam with optically induced forces K. Dholakia & G. C. Spalding, eds. Optical Trapping and Optical Micromanipulation XII.
Type Proceedings-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Zhen Gong, Jose M. Martin-Garcia, Sasha M. Daskalova, Felicia M. Craciunescu, Lusheng Song, Katerina Dörner, Debra T. Hansen, Jay-How Yang, Joshua LaBaer, Brenda G. Hogue, Tsafrir S. Mor, Petra Fromme
Citation Gong, Z. et al., 2015. Biophysical Characterization of a Vaccine Candidate against HIV-1: The Transmembrane and Membrane Proximal Domains of HIV-1 gp41 as a Maltose Binding Protein Fusion A. Kumar, ed. PLoS ONE, 10(8), p.e0136507.
Type Journal-article
Authors Robert M. Lawrence, Chelsie E. Conrad, Nadia A. Zatsepin, Thomas D. Grant, Haiguang Liu, Daniel James, Garrett Nelson, Ganesh Subramanian, Andrew Aquila, Mark S. Hunter, Mengning Liang, Sébastien Boutet, Jesse Coe, John C. H. Spence, Uwe Weierstall, Wei Liu, Petra Fromme, Vadim Cherezov, Brenda G. Hogue
Citation Lawrence, R.M. et al., 2015. Serial femtosecond X-ray diffraction of enveloped virus microcrystals. Structural Dynamics, 2(4), p.041720.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Bahige G. Abdallah, Nadia A. Zatsepin, Shatabdi Roy-Chowdhury, Jesse Coe, Chelsie E. Conrad, Katerina Dörner, Raymond G. Sierra, Hilary P. Stevenson, Fernanda Camacho-Alanis, Thomas D. Grant, Garrett Nelson, Daniel James, Guillermo Calero, Rebekka M. Wachter, John C. H. Spence, Uwe Weierstall, Petra Fromme, Alexandra Ros
Citation Abdallah, B.G. et al., 2015. Microfluidic sorting of protein nanocrystals by size for X-ray free-electron laser diffraction. Structural Dynamics, 2(4), p.041719.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Abbas Ourmazd
Citation Ourmazd, A., 2015. Preface for Special Issue on Biology with X-ray Lasers 2. Structural Dynamics, 2(4), p.041501.
Type Journal-article
Authors Benjamin A Barad, Nathaniel Echols, Ray Yu-Ruei Wang, Yifan Cheng, Frank DiMaio, Paul D Adams, James S Fraser
Citation Barad, B.A. et al., 2015. EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy. Nat Meth, 12(10), pp.943-946.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Raimund Fromme, Andrii Ishchenko, Markus Metz, Shatabdi Roy Chowdhury, Shibom Basu, Sébastien Boutet, Petra Fromme, Thomas A. White, Anton Barty, John C. H. Spence, Uwe Weierstall, Wei Liu, Vadim Cherezov
Citation Fromme, R. et al., 2015. Serial femtosecond crystallography of soluble proteins in lipidic cubic phase. IUCrJ, 2(5), pp.545-551.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Shanteri Singh, Karolina Michalska, Lance Bigelow, Michael Endres, Madan K. Kharel, Gyorgy Babnigg, Ragothaman M. Yennamalli, Craig A. Bingman, Andrzej Joachimiak, Jon S. Thorson, George N. Phillips
Citation Singh, S. et al., 2015. Structural Characterization of CalS8, a TDP-α-d-Glucose Dehydrogenase Involved in Calicheamicin Aminodideoxypentose Biosynthesis. J. Biol. Chem., 290(43), pp.26249-26258.
Type Journal-article
Authors Andrew H. Van Benschoten, Pavel V. Afonine, Thomas C. Terwilliger, Michael E. Wall, Colin J. Jackson, Nicholas K. Sauter, Paul D. Adams, Alexandre Urzhumtsev, James S. Fraser
Citation Van Benschoten, A.H. et al., 2015. Predicting X-ray diffuse scattering from translation-libration-screw structural ensembles. Acta Crystallogr D, 71(8), pp.1657-1667.
Type Journal-article
Authors Alexandre Urzhumtsev, Pavel V. Afonine, Andrew H. Van Benschoten, James S. Fraser, Paul D. Adams
Citation Urzhumtsev, A. et al., 2015. From deep TLS validation to ensembles of atomic models built from elemental motions. Acta Crystallogr D, 71(8), pp.1668-1683.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Premila P. Samuel, Lucian P. Smith, George N. Phillips, John S. Olson
Citation Samuel, P.P. et al., 2015. Apoglobin Stability Is the Major Factor Governing both Cell-free andin VivoExpression of Holomyoglobin. Journal of Biological Chemistry, 290(39), pp.23479-23495.
Type Journal-article
Authors Yanyong Kang, X. Edward Zhou, Xiang Gao, Yuanzheng He, Wei Liu, Andrii Ishchenko, Anton Barty, Thomas A. White, Oleksandr Yefanov, Gye Won Han, Qingping Xu, Parker W. de Waal, Jiyuan Ke, M. H. Eileen Tan, Chenghai Zhang, Arne Moeller, Graham M. West, Bruce D. Pascal, Ned Van Eps, Lydia N. Caro, Sergey A. Vishnivetskiy, Regina J. Lee, Kelly M. Suino-Powell, Xin Gu, Kuntal Pal, Jinming Ma, Xiaoyong Zhi, Sébastien Boutet, Garth J. Williams, Marc Messerschmidt, Cornelius Gati, Nadia A. Zatsepin, Dingjie Wang, Daniel James, Shibom Basu, Shatabdi Roy-Chowdhury, Chelsie E. Conrad, Jesse Coe, Haiguang Liu, Stella Lisova, Christopher Kupitz, Ingo Grotjohann, Raimund Fromme, Yi Jiang, Minjia Tan, Huaiyu Yang, Jun Li, Meitian Wang, Zhong Zheng, Dianfan Li, Nicole Howe, Yingming Zhao, Jörg Standfuss, Kay Diederichs, Yuhui Dong, Clinton S. Potter, Bridget Carragher, Martin Caffrey, Hualiang Jiang, Henry N. Chapman, John C. H. Spence, Petra Fromme, Uwe Weierstall, Oliver P. Ernst, Vsevolod Katritch, Vsevolod V. Gurevich, Patrick R. Griffin, Wayne L. Hubbell, Raymond C. Stevens, Vadim Cherezov, Karsten Melcher, H. Eric Xu
Citation Kang, Y. et al., 2015. Crystal structure of rhodopsin bound to arrestin by femtosecond X-ray laser. Nature, 523(7562), pp.561-567.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors S. Goyal, M. Jäger, P.N. Robinson, V. Vanita
Citation Goyal, S. et al., 2015. Confirmation of TTC8 as a disease gene for nonsyndromic autosomal recessive retinitis pigmentosa (RP51) . Clinical Genetics, 89(4), pp.454-460.
Type Journal-article
Authors Marcus Fischer, Brian K. Shoichet, James S. Fraser
Citation Fischer, M., Shoichet, B.K. & Fraser, J.S., 2015. Inside Cover: One Crystal, Two Temperatures: Cryocooling Penalties Alter Ligand Binding to Transient Protein Sites (ChemBioChem 11/2015). ChemBioChem, 16(11), pp.1526-1526.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors J. Chalupský, P. Boháček, T. Burian, V. Hájková, S. P. Hau-Riege, P. A. Heimann, L. Juha, M. Messerschmidt, S. P. Moeller, B. Nagler, M. Rowen, W. F. Schlotter, M. L. Swiggers, J. J. Turner, J. Krzywinski
Citation Chalupský, J. et al., 2015. Imprinting a Focused X-Ray Laser Beam to Measure Its Full Spatial Characteristics. Physical Review Applied, 4(1).
Type Journal-article
Authors Hartawan Laksmono, Trevor A. McQueen, Jonas A. Sellberg, N. Duane Loh, Congcong Huang, Daniel Schlesinger, Raymond G. Sierra, Christina Y. Hampton, Dennis Nordlund, Martin Beye, Andrew V. Martin, Anton Barty, M. Marvin Seibert, Marc Messerschmidt, Garth J. Williams, Sébastien Boutet, Katrin Amann-Winkel, Thomas Loerting, Lars G. M. Pettersson, Michael J. Bogan, Anders Nilsson
Citation Laksmono, H. et al., 2015. Anomalous Behavior of the Homogeneous Ice Nucleation Rate in "No-Man's Land." The Journal of Physical Chemistry Letters, 6(14), pp.2826-2832.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors M Mucke, V Zhaunerchyk, L J Frasinski, R J Squibb, M Siano, J H D Eland, P Linusson, P Salén, P v d Meulen, R D Thomas, M Larsson, L Foucar, J Ullrich, K Motomura, S Mondal, K Ueda, T Osipov, L Fang, B F Murphy, N Berrah, C Bostedt, J D Bozek, S Schorb, M Messerschmidt, J M Glownia, J P Cryan, R N Coffee, O Takahashi, S Wada, M N Piancastelli, R Richter, K C Prince, R Feifel
Citation Mucke, M. et al., 2015. Covariance mapping of two-photon double core hole states in C2H2and C2H6produced by an x-ray free electron laser. New J. Phys., 17(7), p.073002.
Type Journal-article
Authors Johan Hattne, Nathaniel Echols, Rosalie Tran, Jan Kern, Richard J Gildea, Aaron S Brewster, Roberto Alonso-Mori, Carina Glöckner, Julia Hellmich, Hartawan Laksmono, Raymond G Sierra, Benedikt Lassalle-Kaiser, Alyssa Lampe, Guangye Han, Sheraz Gul, Dörte DiFiore, Despina Milathianaki, Alan R Fry, Alan Miahnahri, William E White, Donald W Schafer, M Marvin Seibert, Jason E Koglin, Dimosthenis Sokaras, Tsu-Chien Weng, Jonas Sellberg, Matthew J Latimer, Pieter Glatzel, Petrus H Zwart, Ralf W Grosse-Kunstleve, Michael J Bogan, Marc Messerschmidt, Garth J Williams, Sébastien Boutet, Johannes Messinger, Athina Zouni, Junko Yano, Uwe Bergmann, Vittal K Yachandra, Paul D Adams, Nicholas K Sauter
Citation Hattne, J. et al., 2015. Corrigendum: Accurate macromolecular structures using minimal measurements from X-ray free-electron lasers. Nat Meth, 12(7), pp.692-692.
Type Journal-article
Authors Valérie Panneels, Wenting Wu, Ching-Ju Tsai, Przemek Nogly, Jan Rheinberger, Kathrin Jaeger, Gregor Cicchetti, Cornelius Gati, Leonhard M. Kick, Leonardo Sala, Guido Capitani, Chris Milne, Celestino Padeste, Bill Pedrini, Xiao-Dan Li, Jörg Standfuss, Rafael Abela, Gebhard Schertler
Citation Panneels, V. et al., 2015. Time-resolved structural studies with serial crystallography: A new light on retinal proteins. Structural Dynamics, 2(4), p.041718.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Chelsie E. Conrad, Shibom Basu, Daniel James, Dingjie Wang, Alexander Schaffer, Shatabdi Roy-Chowdhury, Nadia A. Zatsepin, Andrew Aquila, Jesse Coe, Cornelius Gati, Mark S. Hunter, Jason E. Koglin, Christopher Kupitz, Garrett Nelson, Ganesh Subramanian, Thomas A. White, Yun Zhao, James Zook, Sébastien Boutet, Vadim Cherezov, John C. H. Spence, Raimund Fromme, Uwe Weierstall, Petra Fromme
Citation Conrad, C.E. et al., 2015. A novel inert crystal delivery medium for serial femtosecond crystallography. IUCrJ, 2(4), pp.421-430.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Ashtamurthy S. Pawate, Vukica Šrajer, Jeremy Schieferstein, Sudipto Guha, Robert Henning, Irina Kosheleva, Marius Schmidt, Zhong Ren, Paul J. A. Kenis, Sarah L. Perry
Citation Pawate, A.S. et al., 2015. Towards time-resolved serial crystallography in a microfluidic device. Acta Crystallogr Sect F Struct Biol Cryst Commun, 71(7), pp.823-830.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Wenting Wu, Przemyslaw Nogly, Jan Rheinberger, Leonhard M. Kick, Cornelius Gati, Garrett Nelson, Xavier Deupi, Jörg Standfuss, Gebhard Schertler, Valérie Panneels
Citation Wu, W. et al., 2015. Batch crystallization of rhodopsin for structural dynamics using an X-ray free-electron laser. Acta Crystallogr Sect F Struct Biol Cryst Commun, 71(7), pp.856-860.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Geoffrey K. Feld, Michael Heymann, W. Henry Benner, Tommaso Pardini, Ching-Ju Tsai, Sébastien Boutet, Matthew A. Coleman, Mark S. Hunter, Xiaodan Li, Marc Messerschmidt, Achini Opathalage, Bill Pedrini, Garth J. Williams, Bryan A. Krantz, Seth Fraden, Stefan Hau-Riege, James E. Evans, Brent W. Segelke, Matthias Frank
Citation Feld, G.K. et al., 2015. Low- Z polymer sample supports for fixed-target serial femtosecond X-ray crystallography . J Appl Crystallogr, 48(4), pp.1072-1079.
Type Journal-article
Authors JR Lohman, A Joachimiak, GN Phillips Jr, B Shen
Citation Lohman, J. et al., 2015. Structural and evolutionary relationships of ketosynthase domains from modular polyketide synthases. Planta Medica, 81(11).
Type Journal-article
Authors R. A. Kirian, S. Awel, N. Eckerskorn, H. Fleckenstein, M. Wiedorn, L. Adriano, S. Bajt, M. Barthelmess, R. Bean, K. R. Beyerlein, L. M. G. Chavas, M. Domaracky, M. Heymann, D. A. Horke, J. Knoska, M. Metz, A. Morgan, D. Oberthuer, N. Roth, T. Sato, P. L. Xavier, O. Yefanov, A. V. Rode, J. Küpper, H. N. Chapman
Citation Kirian, R.A. et al., 2015. Simple convergent-nozzle aerosol injector for single-particle diffractive imaging with X-ray free-electron lasers. Structural Dynamics, 2(4), p.041717.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Jing Yang, Antonella Cusimano, Jappmann K. Monga, Morgan E. Preziosi, Filippo Pullara, Guillermo Calero, Richard Lang, Terry P. Yamaguchi, Kari N. Nejak-Bowen, Satdarshan P. Monga
Citation Yang, J. et al., 2015. WNT5A Inhibits Hepatocyte Proliferation and Concludes β-Catenin Signaling in Liver Regeneration. The American Journal of Pathology, 185(8), pp.2194-2205.
Type Journal-article
Authors H. C. Poon, D. K. Saldin
Citation Poon, H.C. & Saldin, D.K., 2015. Use of triple correlations for the sign determinations of expansion coefficients of symmetric approximations to the diffraction volumes of regular viruses. Structural Dynamics, 2(4), p.041716.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Steve P. Meisburger, Suzette A. Pabit, Lois Pollack
Citation Meisburger, S.P., Pabit, S.A. & Pollack, L., 2015. Determining the Locations of Ions and Water around DNA from X-Ray Scattering Measurements. Biophysical Journal, 108(12), pp.2886-2895.
Type Journal-article
Authors Kenji Murakami, Pierre-Jean Mattei, Ralph E. Davis, Huiyan Jin, Craig D. Kaplan, Roger D. Kornberg
Citation Murakami, K. et al., 2015. Uncoupling Promoter Opening from Start-Site Scanning. Molecular Cell, 59(1), pp.133-138.
Type Journal-article
Authors Chufeng Li, Kevin Schmidt, John C. Spence
Citation Li, C., Schmidt, K. & Spence, J.C., 2015. Data collection strategies for time-resolved X-ray free-electron laser diffraction, and 2-color methods. Structural Dynamics, 2(4), p.041714.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Maike Bublitz, Karol Nass, Nikolaj D. Drachmann, Anders J. Markvardsen, Matthias J. Gutmann, Thomas R. M. Barends, Daniel Mattle, Robert L. Shoeman, R. Bruce Doak, Sébastien Boutet, Marc Messerschmidt, Marvin M. Seibert, Garth J. Williams, Lutz Foucar, Linda Reinhard, Oleg Sitsel, Jonas L. Gregersen, Johannes D. Clausen, Thomas Boesen, Kamil Gotfryd, Kai-Tuo Wang, Claus Olesen, Jesper V. Møller, Poul Nissen, Ilme Schlichting
Citation Bublitz, M. et al., 2015. Structural studies of P-type ATPase-ligand complexes using an X-ray free-electron laser. IUCrJ, 2(4), pp.409-420.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Shanteri Singh, Youngchang Kim, Fengbin Wang, Lance Bigelow, Michael Endres, Madan K. Kharel, Gyorgy Babnigg, Craig A. Bingman, Andrzej Joachimiak, Jon S. Thorson, George N. Phillips
Citation Singh, S. et al., 2015. Structural characterization of AtmS13, a putative sugar aminotransferase involved in indolocarbazole AT2433 aminopentose biosynthesis. Proteins: Structure, Function, and Bioinformatics, 83(8), pp.1547-1554.
Type Journal-article
Authors Ying Wu, Leonardus M. I. Koharudin, Jennifer Mehrens, Maria DeLucia, Chang-Hyeok Byeon, In-Ja L. Byeon, Guillermo Calero, Jinwoo Ahn, Angela M. Gronenborn
Citation Wu, Y. et al., 2015. Structural Basis of Clade-specific Engagement of SAMHD1 (Sterile α Motif and Histidine/Aspartate-containing Protein 1) Restriction Factors by Lentiviral Viral Protein X (Vpx) Virulence Factors. Journal of Biological Chemistry, 290(29), pp.17935-17945.
Type Journal-article
Authors Jesse N. Clark, Loren Beitra, Gang Xiong, David M. Fritz, Henrik T. Lemke, Diling Zhu, Matthieu Chollet, Garth J. Williams, Marc M. Messerschmidt, Brian Abbey, Ross J. Harder, Alexander M. Korsunsky, Justin S. Wark, David A. Reis, Ian K. Robinson
Citation Clark, J.N. et al., 2015. Imaging transient melting of a nanocrystal using an X-ray laser. Proc Natl Acad Sci USA, 112(24), pp.7444-7448.
Type Journal-article
Authors Mauro Prasciolu, Anton Haase, Frank Scholze, Henry N. Chapman, Saša Bajt
Citation Prasciolu, M. et al., 2015. Extended asymmetric-cut multilayer X-ray gratings. Optics Express, 23(12), p.15195.
Type Journal-article
Authors Andrew J. Morgan, Mauro Prasciolu, Andrzej Andrejczuk, Jacek Krzywinski, Alke Meents, David Pennicard, Heinz Graafsma, Anton Barty, Richard J. Bean, Miriam Barthelmess, Dominik Oberthuer, Oleksandr Yefanov, Andrew Aquila, Henry N. Chapman, Saša Bajt
Citation Morgan, A.J. et al., 2015. High numerical aperture multilayer Laue lenses. Scientific Reports, 5(1).
Type Journal-article
Authors Fengbin Wang, Shanteri Singh, Weijun Xu, Kate E. Helmich, Mitchell D. Miller, Hongnan Cao, Craig A. Bingman, Jon S. Thorson, George N. Phillips
Citation Wang, F. et al., 2015. Structural Basis for the Stereochemical Control of Amine Installation in Nucleotide Sugar Aminotransferases. ACS Chemical Biology, 10(9), pp.2048-2056.
Type Journal-article
Authors Marcus Fischer, Brian K. Shoichet, James S. Fraser
Citation Fischer, M., Shoichet, B.K. & Fraser, J.S., 2015. One Crystal, Two Temperatures: Cryocooling Penalties Alter Ligand Binding to Transient Protein Sites. ChemBioChem, 16(11), pp.1560-1564.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Eynat Dellus-Gur, Mikael Elias, Emilia Caselli, Fabio Prati, Merijn L.M. Salverda, J. Arjan G.M. de Visser, James S. Fraser, Dan S. Tawfik
Citation Dellus-Gur, E. et al., 2015. Negative Epistasis and Evolvability in TEM-1 β-Lactamase--The Thin Line between an Enzyme's Conformational Freedom and Disorder. Journal of Molecular Biology, 427(14), pp.2396-2409.
Type Journal-article
Authors James Zook, Gina Mo, Nicholas J. Sisco, Felicia M. Craciunescu, Debra T. Hansen, Bobby Baravati, Brian R. Cherry, Kathryn Sykes, Rebekka Wachter, Wade D. Van Horn, Petra Fromme
Citation Zook, J. et al., 2015. NMR Structure of Francisella tularensis Virulence Determinant Reveals Structural Homology to Bet v1 Allergen Proteins. Structure, 23(6), pp.1116-1122.
Type Journal-article
Authors Joseph R. Luft, Jennifer R. Wolfley, Eleanor Cook Franks, Angela M. Lauricella, Ellen J. Gualtieri, Edward H. Snell, Rong Xiao, John K. Everett, Gaetano T. Montelione
Citation Luft, J.R. et al., 2015. The detection and subsequent volume optimization of biological nanocrystals. Structural Dynamics, 2(4), p.041710.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Joshua R. Kane, David J. Stanley, Judd F. Hultquist, Jeffrey R. Johnson, Nicole Mietrach, Jennifer M. Binning, Stefán R. Jónsson, Sarah Barelier, Billy W. Newton, Tasha L. Johnson, Kathleen E. Franks-Skiba, Ming Li, William L. Brown, Hörður I. Gunnarsson, Adalbjorg Adalbjornsdóttir, James S. Fraser, Reuben S. Harris, Valgerður Andrésdóttir, John D. Gross, Nevan J. Krogan
Citation Kane, J.R. et al., 2015. Lineage-Specific Viral Hijacking of Non-canonical E3 Ubiquitin Ligase Cofactors in the Evolution of Vif Anti-APOBEC3 Activity. Cell Reports, 11(8), pp.1236-1250.
Type Journal-article
Authors L. M. G. Chavas, L. Gumprecht, H. N. Chapman
Citation Chavas, L.M.G., Gumprecht, L. & Chapman, H.N., 2015. Possibilities for serial femtosecond crystallography sample delivery at future light sourcesa). Structural Dynamics, 2(4), p.041709.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Jay-How Yang, Iosifina Sarrou, Jose M. Martin-Garcia, Shangji Zhang, Kevin E. Redding, Petra Fromme
Citation Yang, J.-H. et al., 2015. Purification and biochemical characterization of the ATP synthase from Heliobacterium modesticaldum. Protein Expression and Purification, 114, pp.1-8.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Marius Schmidt, Kanupriya Pande, Shibom Basu, Jason Tenboer
Citation Schmidt, M. et al., 2015. Room temperature structures beyond 1.5 ... by serial femtosecond crystallography. Structural Dynamics, 2(4), p.041708.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Wolfram Helml, Andreas R. Maier, Wolfgang Schweinberger, Ivanka Grguras, Paul Radcliffe, Gilles Doumy, Chris Roedig, Justin Gagnon, Marc Messerschmidt, Sebastian Schorb, Christoph Bostedt, Florian Grüner, Louis F. DiMauro, Denis Cubaynes, John D. Bozek, Thomas Tschentscher, John T. Costello, Michael Meyer, Ryan Coffee, Stefan Düsterer, Adrian L. Cavalieri, Reinhard Kienberger
Citation Helml, W. et al., 2015. Sub-Femtosecond Free-Electron Laser Pulses. CLEO: 2015.
Type Proceedings-article
Authors Daniel A Keedy, James Fraser, Henry van den Bedem
Citation Keedy, D.A., Fraser, J. & van den Bedem, H., 2015. Exposing hidden alternative backbone conformations in X-ray crystallography using qFit.
Type Posted-content
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors A. Hosseinizadeh, A. Dashti, P. Schwander, R. Fung, A. Ourmazd
Citation Hosseinizadeh, A. et al., 2015. Single-particle structure determination by X-ray free-electron lasers: Possibilities and challenges. Structural Dynamics, 2(4), p.041601.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors L. Galli, S.-K. Son, M. Klinge, S. Bajt, A. Barty, R. Bean, C. Betzel, K. R. Beyerlein, C. Caleman, R. B. Doak, M. Duszenko, H. Fleckenstein, C. Gati, B. Hunt, R. A. Kirian, M. Liang, M. H. Nanao, K. Nass, D. Oberthür, L. Redecke, R. Shoeman, F. Stellato, C. H. Yoon, T. A. White, O. Yefanov, J. Spence, H. N. Chapman
Citation Galli, L. et al., 2015. Electronic damage in S atoms in a native protein crystal induced by an intense X-ray free-electron laser pulse. Structural Dynamics, 2(4), p.041703.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Do Jin Kim, Eduard Bitto, Craig A. Bingman, Hyun-Jung Kim, Byung Woo Han, George N. Phillips
Citation Kim, D.J. et al., 2015. Crystal structure of the protein At3g01520, a eukaryotic universal stress protein-like protein from arabidopsis thaliana in complex with AMP . Proteins: Structure, Function, and Bioinformatics, 83(7), pp.1368-1373.
Type Journal-article
Authors Haitao Zhang, Hamiyet Unal, Cornelius Gati, Gye Won Han, Wei Liu, Nadia A. Zatsepin, Daniel James, Dingjie Wang, Garrett Nelson, Uwe Weierstall, Michael R. Sawaya, Qingping Xu, Marc Messerschmidt, Garth J. Williams, Sébastien Boutet, Oleksandr M. Yefanov, Thomas A. White, Chong Wang, Andrii Ishchenko, Kalyan C. Tirupula, Russell Desnoyer, Jesse Coe, Chelsie E. Conrad, Petra Fromme, Raymond C. Stevens, Vsevolod Katritch, Sadashiva S. Karnik, Vadim Cherezov
Citation Zhang, H. et al., 2015. Structure of the Angiotensin Receptor Revealed by Serial Femtosecond Crystallography. Cell, 161(4), pp.833-844.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Thomas Charles Terwilliger, Li-Wei Hung, Paul D. Adams, Nathanial D Echols, Ralf Grosse-Kunstleve, James Holton, Gabor Bunkoczi, Randy J. Read, David Akey, Janet Smith
Citation Terwilliger, T.C. et al., 2015. Structure determination with weak anomalous signal.
Type Report
Authors Michele E. Auldridge, Hongnan Cao, Saurabh Sen, Laura P. Franz, Craig A. Bingman, Ragothaman M. Yennamalli, George N. Phillips, David Mead, Eric J. Steinmetz
Citation Auldridge, M.E. et al., 2015. LucY: A Versatile New Fluorescent Reporter Protein S. W. Michnick, ed. PLoS ONE, 10(4), p.e0124272.
Type Journal-article
Authors Diana C.F. Monteiro, Vijay Patel, Christopher P. Bartlett, Shingo Nozaki, Thomas D. Grant, James A. Gowdy, Gary S. Thompson, Arnout P. Kalverda, Edward H. Snell, Hironori Niki, Arwen R. Pearson, Michael E. Webb
Citation Monteiro, D.C.F. et al., 2015. The Structure of the PanD/PanZ Protein Complex Reveals Negative Feedback Regulation of Pantothenate Biosynthesis by Coenzyme A. Chemistry & Biology, 22(4), pp.492-503.
Type Journal-article
Authors A. Aquila, A. Barty, C. Bostedt, S. Boutet, G. Carini, D. dePonte, P. Drell, S. Doniach, K. H. Downing, T. Earnest, H. Elmlund, V. Elser, M. Gühr, J. Hajdu, J. Hastings, S. P. Hau-Riege, Z. Huang, E. E. Lattman, F. R. N. C. Maia, S. Marchesini, A. Ourmazd, C. Pellegrini, R. Santra, I. Schlichting, C. Schroer, J. C. H. Spence, I. A. Vartanyants, S. Wakatsuki, W. I. Weis, G. J. Williams
Citation Aquila, A. et al., 2015. The linac coherent light source single particle imaging road map. Structural Dynamics, 2(4), p.041701.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Thomas Barends, Thomas A. White, Anton Barty, Lutz Foucar, Marc Messerschmidt, Roberto Alonso-Mori, Sabine Botha, Henry Chapman, R. Bruce Doak, Lorenzo Galli, Cornelius Gati, Matthias Gutmann, Jason Koglin, Anders Markvardsen, Karol Nass, Dominik Oberthur, Robert L. Shoeman, Ilme Schlichting, Sébastien Boutet
Citation Barends, T. et al., 2015. Effects of self-seeding and crystal post-selection on the quality of Monte Carlo-integrated SFX data. Journal of Synchrotron Radiation, 22(3), pp.644-652.
Type Journal-article
Authors Jesse Coe, Christopher Kupitz, Shibom Basu, Chelsie E. Conrad, Shatabdi Roy-Chowdhury, Raimund Fromme, Petra Fromme
Citation Coe, J. et al., 2015. Crystallization of Photosystem II for Time-Resolved Structural Studies Using an X-ray Free Electron Laser. Membrane Proteins--Engineering, Purification and Crystallization, pp.459-482.
Type Book-chapter
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Volker Schweikhard, Cong A. Meng, Kenji Murakami, Craig D. Kaplan, Roger D. Kornberg, Steven M. Block
Citation Schweikhard, V. et al., 2014. TFIIF and TFIIS Enhance the Mechanical Persistence of Transcript Elongation by RNA Polymerase II. Biophysical Journal, 106(2), p.486a.
Type Journal-article
Authors James D. Zook, Nicholas Sisco, Gina Mo, Debra Hansen, Felicia Craciunescu, Brian Cherry, Kathryn Sykes, Wade Van Horn, Petra Fromme
Citation Zook, J.D. et al., 2014. High-Resolution NMR Spectroscopy Reveals Structure of Lipoprotein flpp3. Biophysical Journal, 106(2), p.193a.
Type Journal-article
Authors Alexander L. Van Slyke, Juan Wang, Avtar Singh, Lois Pollack, Warren R. Zipfel
Citation Van Slyke, A.L. et al., 2014. Fast Binding Kinetics of RNA Aptamers Measured using a Novel Microfluidic Mixer. Biophysical Journal, 106(2), p.796a.
Type Journal-article
Authors Katerina Dörner, Jose Martin Garcia, Christopher Kupitz, Rebekka M. Wachter, Petra Fromme
Citation Dörner, K. et al., 2014. Detection of Protein Nanocrystals Based on the Reversibility of Crystallization. Biophysical Journal, 106(2), p.458a.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Michael E. Wall, Thomas C. Terwilliger, James S. Fraser, Paul D. Adams, Nicholas K. Sauter, Andrew VanBenschoten
Citation Wall, M.E. et al., 2014. Diffuse X-Ray Scattering for Ensemble Modeling of Crystalline Proteins. Biophysical Journal, 106(2), p.384a.
Type Journal-article
Authors Jose M. Martin, Debra T. Hansen, Andrrey Loskutov, Mark D. Robida, Felicia M. Craciunescu, Kathryn Sykes, Rebekka M. Wachter, Petra Fromme, James P. Allen
Citation Martin, J.M. et al., 2014. Sequence Analysis and Biophysical Characterization Reveals the Presence of a Long Disordered Region in the CapA Membrane Protein from F. Tularensis. Biophysical Journal, 106(2), p.688a.
Type Journal-article
Authors Ken R. Ferguson, Maximilian Bucher, John D. Bozek, Sebastian Carron, Jean-Charles Castagna, Ryan Coffee, G. Ivan Curiel, Michael Holmes, Jacek Krzywinski, Marc Messerschmidt, Michael Minitti, Ankush Mitra, Stefan Moeller, Peter Noonan, Timur Osipov, Sebastian Schorb, Michele Swiggers, Alexander Wallace, Jing Yin, Christoph Bostedt
Citation Ferguson, K.R. et al., 2015. The Atomic, Molecular and Optical Science instrument at the Linac Coherent Light Source. J Synchrotron Rad, 22(3), pp.492-497.
Type Journal-article
Authors R. Sophia Weerth, Karolina Michalska, Craig A. Bingman, Ragothaman M. Yennamalli, Hui Li, Robert Jedrzejczak, Fengbin Wang, Gyorgy Babnigg, Andrzej Joachimiak, Michael G. Thomas, George N. Phillips
Citation Sophia Weerth, R. et al., 2015. Structure of a cupin protein Plu4264 from Photorhabdus luminescens subsp. laumondii TTO1 at 1.35 ... resolution . Proteins: Structure, Function, and Bioinformatics, 83(5), pp.1003-1003.
Type Journal-article
Authors Mengning Liang, Garth J. Williams, Marc Messerschmidt, M. Marvin Seibert, Paul A. Montanez, Matt Hayes, Despina Milathianaki, Andrew Aquila, Mark S. Hunter, Jason E. Koglin, Donald W. Schafer, Serge Guillet, Armin Busse, Robert Bergan, William Olson, Kay Fox, Nathaniel Stewart, Robin Curtis, Alireza Alan Miahnahri, Sébastien Boutet
Citation Liang, M. et al., 2015. The Coherent X-ray Imaging instrument at the Linac Coherent Light Source. J Synchrotron Rad, 22(3), pp.514-519.
Type Journal-article
Authors K. Pande, M. Schmidt, P. Schwander, D. K. Saldin
Citation Pande, K. et al., 2015. Simulations on time-resolved structure determination of uncrystallized biomolecules in the presence of shot noise. Structural Dynamics, 2(2), p.024103.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Sébastien Boutet, Lutz Foucar, Thomas R. M. Barends, Sabine Botha, R. Bruce Doak, Jason E. Koglin, Marc Messerschmidt, Karol Nass, Ilme Schlichting, M. Marvin Seibert, Robert L. Shoeman, Garth J. Williams
Citation Boutet, S. et al., 2015. Characterization and use of the spent beam for serial operation of LCLS. J Synchrotron Rad, 22(3), pp.634-643.
Type Journal-article
Authors Y. Feng, R. Alonso-Mori, T. R. M. Barends, V. D. Blank, S. Botha, M. Chollet, D. S. Damiani, R. B. Doak, J. M. Glownia, J. M. Koglin, H. T. Lemke, M. Messerschmidt, K. Nass, S. Nelson, I. Schlichting, R. L. Shoeman, Yu. V. Shvyd'ko, M. Sikorski, S. Song, S. Stoupin, S. Terentyev, G. J. Williams, D. Zhu, A. Robert, S. Boutet
Citation Feng, Y. et al., 2015. Demonstration of simultaneous experiments using thin crystal multiplexing at the Linac Coherent Light Source. J Synchrotron Rad, 22(3), pp.626-633.
Type Journal-article
Authors David J. Aceti, Craig A. Bingman, Russell L. Wrobel, Ronnie O. Frederick, Shin-ichi Makino, Karl W. Nichols, Sarata C. Sahu, Lai F. Bergeman, Paul G. Blommel, Claudia C. Cornilescu, Katarzyna A. Gromek, Kory D. Seder, Soyoon Hwang, John G. Primm, Grzegorz Sabat, Frank C. Vojtik, Brian F. Volkman, Zsolt Zolnai, George N. Phillips, John L. Markley, Brian G. Fox
Citation Aceti, D.J. et al., 2015. Expression platforms for producing eukaryotic proteins: a comparison of E. coli cell-based and wheat germ cell-free synthesis, affinity and solubility tags, and cloning strategies. Journal of Structural and Functional Genomics, 16(2), pp.67-80.
Type Journal-article
Authors Dario Mizrachi, Yujie Chen, Jiayan Liu, Hwei-Ming Peng, Ailong Ke, Lois Pollack, Raymond J. Turner, Richard J. Auchus, Matthew P. DeLisa
Citation Mizrachi, D. et al., 2015. Making water-soluble integral membrane proteins in vivo using an amphipathic protein fusion strategy. Nature Communications, 6, p.6826.
Type Journal-article
Authors Yoav Shechtman, Yonina C. Eldar, Oren Cohen, Henry Nicholas Chapman, Jianwei Miao, Mordechai Segev
Citation Shechtman, Y. et al., 2015. Phase Retrieval with Application to Optical Imaging: A contemporary overview. IEEE Signal Processing Magazine, 32(3), pp.87-109.
Type Journal-article
Authors Jinhai Chen, Adam Kell, Khem Acharya, Christopher Kupitz, Petra Fromme, Ryszard Jankowiak
Citation Chen, J. et al., 2015. Critical assessment of the emission spectra of various photosystem II core complexes. Photosynthesis Research, 124(3), pp.253-265.
Type Journal-article
Authors Henry van den Bedem, James S Fraser
Citation Van den Bedem, H. & Fraser, J.S., 2015. Integrative, dynamic structural biology at atomic resolution--it's about time. Nat Meth, 12(4), pp.307-318.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Dandan Zhang, Zhan-Guo Gao, Kaihua Zhang, Evgeny Kiselev, Steven Crane, Jiang Wang, Silvia Paoletta, Cuiying Yi, Limin Ma, Wenru Zhang, Gye Won Han, Hong Liu, Vadim Cherezov, Vsevolod Katritch, Hualiang Jiang, Raymond C. Stevens, Kenneth A. Jacobson, Qiang Zhao, Beili Wu
Citation Zhang, D. et al., 2015. Two disparate ligand-binding sites in the human P2Y1 receptor. Nature, 520(7547), pp.317-321.
Type Journal-article
Authors Lindsay L Traeger, Jeremy D Volkening, Howell Moffett, Jason R Gallant, Po-Hao Chen, Carl D Novina, George N Phillips, Rene Anand, Gregg B Wells, Matthew Pinch, Robert Güth, Graciela A Unguez, James S Albert, Harold Zakon, Michael R Sussman, Manoj P Samanta
Citation Traeger, L.L. et al., 2015. Unique patterns of transcript and miRNA expression in the South American strong voltage electric eel (Electrophorus electricus). BMC Genomics, 16(1).
Type Journal-article
Authors Gustavo Fenalti, Enrique E. Abola, Chong Wang, Beili Wu, Vadim Cherezov
Citation Fenalti, G. et al., 2015. Fluorescence Recovery After Photobleaching in Lipidic Cubic Phase (LCP-FRAP). Membrane Proteins--Engineering, Purification and Crystallization, pp.417-437.
Type Book-chapter
Authors Bahige G. Abdallah, Shatabdi Roy-Chowdhury, Jesse Coe, Petra Fromme, Alexandra Ros
Citation Abdallah, B.G. et al., 2015. High Throughput Protein Nanocrystal Fractionation in a Microfluidic Sorter. Anal. Chem., 87(8), pp.4159-4167.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Daniel A Keedy, Lillian R Kenner, Matthew Warkentin, Rahel Woldeyes, Michael C Thompson, Aaron S Brewster, Andrew H Van Benschoten, Elizabeth L Baxter, Jesse B Hopkins, Monarin Uervirojnangkoorn, Scott E McPhillps, Jinhu Song, Roberto Alonso-Mori, James M Holton, William I Weis, Axel T Brunger, S. Michael Soltis, Henrik Lemke, Ana Gonzalez, Nicholas K Sauter, Aina E Cohen, Henry van den Bedem, Robert E Thorne, James Fraser
Citation Keedy, D.A. et al., 2015. Mapping the Conformational Landscape of a Dynamic Enzyme by XFEL and Multitemperature Crystallography.
Type Posted-content
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors P.F. Lyman, V.L. Shneerson, R. Fung, R.J. Harder, S.S. Parihar, H.T. Johnson-Steigelman, D.K. Saldin
Citation Lyman, P.F. et al., 2008. Solution to the phase problem for surface X-ray diffraction. Acta Crystallographica Section A Foundations of Crystallography, 64(a1), pp.C109-C109.
Type Journal-article
Authors Alexander Heifetz, Gebhard F. X. Schertler, Roland Seifert, Christopher G. Tate, Patrick M. Sexton, Vsevolod V. Gurevich, Daniel Fourmy, Vadim Cherezov, Fiona H. Marshall, R. Ian Storer, Isabel Moraes, Irina G. Tikhonova, Christofer S. Tautermann, Peter Hunt, Tom Ceska, Simon Hodgson, Mike J. Bodkin, Shweta Singh, Richard J. Law, Philip C. Biggin
Citation Heifetz, A. et al., 2015. GPCR structure, function, drug discovery and crystallography: report from Academia-Industry International Conference (UK Royal Society) Chicheley Hall, 1-2 September 2014. Naunyn-Schmiedeberg's Arch Pharmacol, 388(8), pp.883-903.
Type Journal-article
Authors M. Prasciolu, A. F. G. Leontowich, J. Krzywinski, A. Andrejczuk, H. N. Chapman, S. Bajt
Citation Prasciolu, M. et al., 2015. Fabrication of wedged multilayer Laue lenses. Opt. Mater. Express, 5(4), p.748.
Type Journal-article
Authors Justin D Flory, Trey Johnson, Chad R Simmons, Su Lin, Giovanna Ghirlanda, Petra Fromme
Citation Flory, J.D. et al., 2014. Purification and assembly of thermostable Cy5 labeled γ-PNAs into a 3D DNA nanocage. Artificial DNA: PNA & XNA, 5(3), p.e992181.
Type Journal-article
Authors Helen M. Ginn, Marc Messerschmidt, Xiaoyun Ji, Hanwen Zhang, Danny Axford, Richard J. Gildea, Graeme Winter, Aaron S. Brewster, Johan Hattne, Armin Wagner, Jonathan M. Grimes, Gwyndaf Evans, Nicholas K. Sauter, Geoff Sutton, David I. Stuart
Citation Ginn, H.M. et al., 2015. Structure of CPV17 polyhedrin determined by the improved analysis of serial femtosecond crystallographic data. Nat Comms, 6, p.6435.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Sol M. Gruner, Eaton E. Lattman
Citation Gruner, S.M. & Lattman, E.E., 2015. Biostructural Science Inspired by Next-Generation X-Ray Sources. Annual Review of Biophysics, 44(1), pp.33-51.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors S. M. Vinko, O. Ciricosta, T. R. Preston, D. S. Rackstraw, C.R.D. Brown, T. Burian, J. Chalupský, B. I. Cho, H.-K. Chung, K. Engelhorn, R. W. Falcone, R. Fiokovinini, V. Hájková, P. A. Heimann, L. Juha, H. J. Lee, R. W. Lee, M. Messerschmidt, B. Nagler, W. Schlotter, J. J. Turner, L. Vysin, U. Zastrau, J. S. Wark
Citation Vinko, S.M. et al., 2015. Investigation of femtosecond collisional ionization rates in a solid-density aluminium plasma. Nature Communications, 6, p.6397.
Type Journal-article
Authors Tomas Ekeberg, Martin Svenda, Chantal Abergel, Filipe R. N. C. Maia, Virginie Seltzer, Jean-Michel Claverie, Max Hantke, Olof Jönsson, Carl Nettelblad, Gijs van der Schot, Mengning Liang, Daniel P. DePonte, Anton Barty, M. Marvin Seibert, Bianca Iwan, Inger Andersson, N. Duane Loh, Andrew V. Martin, Henry Chapman, Christoph Bostedt, John D. Bozek, Ken R. Ferguson, Jacek Krzywinski, Sascha W. Epp, Daniel Rolles, Artem Rudenko, Robert Hartmann, Nils Kimmel, Janos Hajdu
Citation Ekeberg, T. et al., 2015. Three-Dimensional Reconstruction of the Giant Mimivirus Particle with an X-Ray Free-Electron Laser. Physical Review Letters, 114(9).
Type Journal-article
Authors Pavithra Venkatagopalan, Sasha M. Daskalova, Lisa A. Lopez, Kelly A. Dolezal, Brenda G. Hogue
Citation Venkatagopalan, P. et al., 2015. Coronavirus envelope (E) protein remains at the site of assembly. Virology, 478, pp.75-85.
Type Journal-article
Authors Alice Soragni, Shida Yousefi, Christina Stoeckle, Angela B. Soriaga, Michael R. Sawaya, Evelyne Kozlowski, Inès Schmid, Susanne Radonjic-Hoesli, Sebastien Boutet, Garth J. Williams, Marc Messerschmidt, M. Marvin Seibert, Duilio Cascio, Nadia A. Zatsepin, Manfred Burghammer, Christian Riekel, Jacques-Philippe Colletier, Roland Riek, David S. Eisenberg, Hans-Uwe Simon
Citation Soragni, A. et al., 2015. Toxicity of Eosinophil MBP Is Repressed by Intracellular Crystallization and Promoted by Extracellular Aggregation. Molecular Cell, 57(6), pp.1011-1021.
Type Journal-article
Authors Fernanda Camacho-Alanis, Alexandra Ros
Citation Camacho-Alanis, F. & Ros, A., 2015. Protein dielectrophoresis and the link to dielectric properties. Bioanalysis, 7(3), pp.353-371.
Type Journal-article
Authors Karol Nass, Lutz Foucar, Thomas R. M. Barends, Elisabeth Hartmann, Sabine Botha, Robert L. Shoeman, R. Bruce Doak, Roberto Alonso-Mori, Andrew Aquila, Saša Bajt, Anton Barty, Richard Bean, Kenneth R. Beyerlein, Maike Bublitz, Nikolaj Drachmann, Jonas Gregersen, H. Olof Jönsson, Wolfgang Kabsch, Stephan Kassemeyer, Jason E. Koglin, Michael Krumrey, Daniel Mattle, Marc Messerschmidt, Poul Nissen, Linda Reinhard, Oleg Sitsel, Dimosthenis Sokaras, Garth J. Williams, Stefan Hau-Riege, Nicusor Timneanu, Carl Caleman, Henry N. Chapman, Sébastien Boutet, Ilme Schlichting
Citation Nass, K. et al., 2015. Indications of radiation damage in ferredoxin microcrystals using high-intensity X-FEL beams. J Synchrotron Rad, 22(2), pp.225-238.
Type Journal-article
Authors Gustavo Fenalti, Nadia A Zatsepin, Cecilia Betti, Patrick Giguere, Gye Won Han, Andrii Ishchenko, Wei Liu, Karel Guillemyn, Haitao Zhang, Daniel James, Dingjie Wang, Uwe Weierstall, John C H Spence, Sébastien Boutet, Marc Messerschmidt, Garth J Williams, Cornelius Gati, Oleksandr M Yefanov, Thomas A White, Dominik Oberthuer, Markus Metz, Chun Hong Yoon, Anton Barty, Henry N Chapman, Shibom Basu, Jesse Coe, Chelsie E Conrad, Raimund Fromme, Petra Fromme, Dirk Tourwé, Peter W Schiller, Bryan L Roth, Steven Ballet, Vsevolod Katritch, Raymond C Stevens, Vadim Cherezov
Citation Fenalti, G. et al., 2015. Structural basis for bifunctional peptide recognition at human δ-opioid receptor. Nature Structural & Molecular Biology, 22(3), pp.265-268.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Richard A. Kirian, Richard J. Bean, Kenneth R. Beyerlein, Miriam Barthelmess, Chun Hong Yoon, Fenglin Wang, Flavio Capotondi, Emanuele Pedersoli, Anton Barty, Henry N. Chapman
Citation Kirian, R.A. et al., 2015. Direct Phasing of Finite Crystals Illuminated with a Free-Electron Laser. Physical Review X, 5(1).
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Gijs van der Schot, Martin Svenda, Filipe R. N. C. Maia, Max Hantke, Daniel P. DePonte, M. Marvin Seibert, Andrew Aquila, Joachim Schulz, Richard Kirian, Mengning Liang, Francesco Stellato, Bianca Iwan, Jakob Andreasson, Nicusor Timneanu, Daniel Westphal, F. Nunes Almeida, Dusko Odic, Dirk Hasse, Gunilla H. Carlsson, Daniel S. D. Larsson, Anton Barty, Andrew V. Martin, Sebastian Schorb, Christoph Bostedt, John D. Bozek, Daniel Rolles, Artem Rudenko, Sascha Epp, Lutz Foucar, Benedikt Rudek, Robert Hartmann, Nils Kimmel, Peter Holl, Lars Englert, Ne-Te Duane Loh, Henry N. Chapman, Inger Andersson, Janos Hajdu, Tomas Ekeberg
Citation Van der Schot, G. et al., 2015. Imaging single cells in a beam of live cyanobacteria with an X-ray laser. Nat Comms, 6, p.5704.
Type Journal-article
Authors Benjamin A Barad, Nathaniel Echols, Ray Yu-Ruei Wang, Yifan Cheng, Frank DiMaio, Paul D Adams, James S Fraser
Citation Barad, B.A. et al., 2015. Side-chain-directed model and map validation for 3D Electron Cryomicroscopy.
Type Posted-content
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Lorenzo Galli, Sang-Kil Son, Thomas A. White, Robin Santra, Henry N. Chapman, Max H. Nanao
Citation Galli, L. et al., 2015. Towards RIP using free-electron laser SFX data. J Synchrotron Rad, 22(2), pp.249-255.
Type Journal-article
Authors Jesse B. Hopkins, Andrea M. Katz, Steve P. Meisburger, Matthew A. Warkentin, Robert E. Thorne, Lois Pollack
Citation Hopkins, J.B. et al., 2015. A microfabricated fixed path length silicon sample holder improves background subtraction for cryoSAXS. Journal of Applied Crystallography, 48(1), pp.227-237.
Type Journal-article
Authors Euiyoung Bae, Sojin Moon, George N. Phillips
Citation Bae, E., Moon, S. & Phillips, G.N., 2015. Molecular dynamics simulation of a psychrophilic adenylate kinase. Journal of the Korean Society for Applied Biological Chemistry, 58(2), pp.209-212.
Type Journal-article
Authors L. Qin, I. Kufareva, L. G. Holden, C. Wang, Y. Zheng, C. Zhao, G. Fenalti, H. Wu, G. W. Han, V. Cherezov, R. Abagyan, R. C. Stevens, T. M. Handel
Citation Qin, L. et al., 2015. Crystal structure of the chemokine receptor CXCR4 in complex with a viral chemokine. Science, 347(6226), pp.1117-1122.
Type Journal-article
Authors Carl Caleman, Nicuşor Tîmneanu, Andrew V. Martin, H. Olof Jönsson, Andrew Aquila, Anton Barty, Howard A. Scott, Thomas A. White, Henry N. Chapman
Citation Caleman, C. et al., 2015. Ultrafast self-gating Bragg diffraction of exploding nanocrystals in an X-ray laser. Optics Express, 23(2), p.1213.
Type Journal-article
Authors E.C. Mattson, K. Pande, S. Cui, M. Weinert, J.H. Chen, C.J. Hirschmugl
Citation Mattson, E.C. et al., 2015. Investigation of NO2 adsorption on reduced graphene oxide. Chemical Physics Letters, 622, pp.86-91.
Type Journal-article
Authors Tomáš Burian, Věra Hájková, Jaromír Chalupský, Luděk Vyšín, Pavel Boháček, Martin Přeček, Jan Wild, Cigdem Özkan, Nicola Coppola, Shafagh Dastjani Farahani, Joachim Schulz, Harald Sinn, Thomas Tschentscher, Jérôme Gaudin, Saša Bajt, Kai Tiedtke, Sven Toleikis, Henry N. Chapman, Rolf A. Loch, Marek Jurek, Ryszard Sobierajski, Jacek Krzywinski, Stefan Moeller, Marion Harmand, Germano Galasso, Mitsuru Nagasono, Karel Saskl, Pavol Sovák, Libor Juha
Citation Burian, T. et al., 2015. Soft x-ray free-electron laser induced damage to inorganic scintillators. Opt. Mater. Express, 5(2), p.254.
Type Journal-article
Authors Alexandre Urzhumtsev, Pavel Afonine, Andrew H Van Benschoten, James Fraser, Paul D Adams
Citation Urzhumtsev, A. et al., 2015. From deep TLS validation to ensembles of atomic models built from elemental motions.
Type Posted-content
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Andrew Van Benschoten, Pavel Afonine, Thomas Terwilliger, Michael Wall, Colin Jackson, Nicholas Sauter, Paul Adams, Alexandre Urzhumtsev, James Fraser
Citation Van Benschoten, A. et al., 2015. Predicting X-ray Diffuse Scattering from Translation Libration Screw Structural Ensembles.
Type Posted-content
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Przemyslaw Nogly, Daniel James, Dingjie Wang, Thomas A. White, Nadia Zatsepin, Anastasya Shilova, Garrett Nelson, Haiguang Liu, Linda Johansson, Michael Heymann, Kathrin Jaeger, Markus Metz, Cecilia Wickstrand, Wenting Wu, Petra Båth, Peter Berntsen, Dominik Oberthuer, Valerie Panneels, Vadim Cherezov, Henry Chapman, Gebhard Schertler, Richard Neutze, John Spence, Isabel Moraes, Manfred Burghammer, Joerg Standfuss, Uwe Weierstall
Citation Nogly, P. et al., 2015. Lipidic cubic phase serial millisecond crystallography using synchrotron radiation. IUCrJ, 2(2), pp.168-176.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Gira Bhabha, Justin T. Biel, James S. Fraser
Citation Bhabha, G., Biel, J.T. & Fraser, J.S., 2015. Keep on Moving: Discovering and Perturbing the Conformational Dynamics of Enzymes. Acc. Chem. Res., 48(2), pp.423-430.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Thomas D. Grant, Joseph R. Luft, Lester G. Carter, Tsutomu Matsui, Thomas M. Weiss, Anne Martel, Edward H. Snell
Citation Grant, T.D. et al., 2015. The accurate assessment of small-angle X-ray scattering data. Acta Crystallogr D, 71(1), pp.45-56.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Vignir Isberg, Chris de Graaf, Andrea Bortolato, Vadim Cherezov, Vsevolod Katritch, Fiona H. Marshall, Stefan Mordalski, Jean-Philippe Pin, Raymond C. Stevens, Gerrit Vriend, David E. Gloriam
Citation Isberg, V. et al., 2015. Generic GPCR residue numbers - aligning topology maps while minding the gaps. Trends in Pharmacological Sciences, 36(1), pp.22-31.
Type Journal-article
Authors J. Tenboer, S. Basu, N. Zatsepin, K. Pande, D. Milathianaki, M. Frank, M. Hunter, S. Boutet, G. J. Williams, J. E. Koglin, D. Oberthuer, M. Heymann, C. Kupitz, C. Conrad, J. Coe, S. Roy-Chowdhury, U. Weierstall, D. James, D. Wang, T. Grant, A. Barty, O. Yefanov, J. Scales, C. Gati, C. Seuring, V. Srajer, R. Henning, P. Schwander, R. Fromme, A. Ourmazd, K. Moffat, J. J. Van Thor, J. C. H. Spence, P. Fromme, H. N. Chapman, M. Schmidt
Citation Tenboer, J. et al., 2014. Time-resolved serial crystallography captures high-resolution intermediates of photoactive yellow protein. Science, 346(6214), pp.1242-1246.
Type Journal-article
Authors Ali Dashti, Peter Schwander, Robert Langlois, Russell Fung, Wen Li, Ahmad Hosseinizadeh, Hstau Y. Liao, Jesper Pallesen, Gyanesh Sharma, Vera A. Stupina, Anne E. Simon, Jonathan D. Dinman, Joachim Frank, Abbas Ourmazd
Citation Dashti, A. et al., 2014. Trajectories of the ribosome as a Brownian nanomachine. Proc Natl Acad Sci USA, 111(49), pp.17492-17497.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors W. Helml, A. R. Maier, W. Schweinberger, I. Grguraš, P. Radcliffe, G. Doumy, C. Roedig, J. Gagnon, M. Messerschmidt, S. Schorb, C. Bostedt, F. Grüner, L. F. DiMauro, D. Cubaynes, J. D. Bozek, Th. Tschentscher, J. T. Costello, M. Meyer, R. Coffee, S. Düsterer, A. L. Cavalieri, R. Kienberger
Citation Helml, W. et al., 2014. Measuring the temporal structure of few-femtosecond free-electron laser X-ray pulses directly in the time domain. Nature Photonics, 8(12), pp.950-957.
Type Journal-article
Authors Yahli Lorch, Barbara Maier-Davis, Roger D. Kornberg
Citation Lorch, Y., Maier-Davis, B. & Kornberg, R.D., 2014. Role of DNA sequence in chromatin remodeling and the formation of nucleosome-free regions. Genes & Development, 28(22), pp.2492-2497.
Type Journal-article
Authors Kenneth R. Beyerlein, Christian Jooss, Anton Barty, Richard Bean, Sébastien Boutet, Sarnjeet S. Dhesi, R. Bruce Doak, Michael Först, Lorenzo Galli, Richard A. Kirian, Joseph Kozak, Michael Lang, Roman Mankowsky, Marc Messerschmidt, John C. H. Spence, Dingjie Wang, Uwe Weierstall, Thomas A. White, Garth J. Williams, Oleksandr Yefanov, Nadia A. Zatsepin, Andrea Cavalleri, Henry N. Chapman
Citation Beyerlein, K.R. et al., 2014. Trace phase detection and strain characterization from serial X-ray free-electron laser crystallography of a Pr0.5Ca0.5MnO3 powder. Powder Diffraction, 30(S1), pp.S25-S30.
Type Journal-article
Authors Paolo Rossi, Lei Shi, Gaohua Liu, Christopher M. Barbieri, Hsiau-Wei Lee, Thomas D. Grant, Joseph R. Luft, Rong Xiao, Thomas B. Acton, Edward H. Snell, Gaetano T. Montelione, David Baker, Oliver F. Lange, Nikolaos G. Sgourakis
Citation Rossi, P. et al., 2014. A hybrid NMR/SAXS-based approach for discriminating oligomeric protein interfaces using Rosetta. Proteins: Structure, Function, and Bioinformatics, 83(2), pp.309-317.
Type Journal-article
Authors Asuka Nakano, Fernanda Camacho-Alanis, Alexandra Ros
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Type Journal-article
Authors Aina E. Cohen, S. Michael Soltis, Ana González, Laura Aguila, Roberto Alonso-Mori, Christopher O. Barnes, Elizabeth L. Baxter, Winnie Brehmer, Aaron S. Brewster, Axel T. Brunger, Guillermo Calero, Joseph F. Chang, Matthieu Chollet, Paul Ehrensberger, Thomas L. Eriksson, Yiping Feng, Johan Hattne, Britt Hedman, Michael Hollenbeck, James M. Holton, Stephen Keable, Brian K. Kobilka, Elena G. Kovaleva, Andrew C. Kruse, Henrik T. Lemke, Guowu Lin, Artem Y. Lyubimov, Aashish Manglik, Irimpan I. Mathews, Scott E. McPhillips, Silke Nelson, John W. Peters, Nicholas K. Sauter, Clyde A. Smith, Jinhu Song, Hilary P. Stevenson, Yingssu Tsai, Monarin Uervirojnangkoorn, Vladimir Vinetsky, Soichi Wakatsuki, William I. Weis, Oleg A. Zadvornyy, Oliver B. Zeldin, Diling Zhu, Keith O. Hodgson
Citation Cohen, A.E. et al., 2014. Goniometer-based femtosecond crystallography with X-ray free electron lasers. Proceedings of the National Academy of Sciences, 111(48), pp.17122-17127.
Type Journal-article
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Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors R. Sophia Weerth, Karolina Michalska, Craig A. Bingman, Ragothaman M. Yennamalli, Hui Li, Robert Jedrzejczak, Fengbin Wang, Gyorgy Babnigg, Andrzej Joachimiak, Michael G. Thomas, George N. Phillips
Type Journal-article
Authors Ganesh Subramanian, Shibom Basu, Haiguang Liu, Jian-Min Zuo, John C.H. Spence
Citation Subramanian, G. et al., 2015. Solving protein nanocrystals by cryo-EM diffraction: Multiple scattering artifacts. Ultramicroscopy, 148, pp.87-93.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Dingjie Wang, Uwe Weierstall, Lois Pollack, John Spence
Citation Wang, D. et al., 2014. Double-focusing mixing jet for XFEL study of chemical kinetics. J Synchrotron Rad, 21(6), pp.1364-1366.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Pilarisetty Tarakeshwar, Julio L. Palma, Gregory P. Holland, Petra Fromme, Jeffery L. Yarger, Vladimiro Mujica
Citation Tarakeshwar, P. et al., 2014. Probing the Nature of Charge Transfer at Nano-Bio Interfaces: Peptides on Metal Oxide Nanoparticles. The Journal of Physical Chemistry Letters, 5(20), pp.3555-3559.
Type Journal-article
Authors Hung T. Nguyen, Suzette A. Pabit, Steve P. Meisburger, Lois Pollack, David A. Case
Citation Nguyen, H.T. et al., 2014. Accurate small and wide angle x-ray scattering profiles from atomic models of proteins and nucleic acids. The Journal of Chemical Physics, 141(22), p.22D508.
Type Journal-article
Authors Brianna B. Williams, Andrew H. Van Benschoten, Peter Cimermancic, Mohamed S. Donia, Michael Zimmermann, Mao Taketani, Atsushi Ishihara, Purna C. Kashyap, James S. Fraser, Michael A. Fischbach
Citation Williams, B.B. et al., 2014. Discovery and Characterization of Gut Microbiota Decarboxylases that Can Produce the Neurotransmitter Tryptamine. Cell Host & Microbe, 16(4), pp.495-503.
Type Journal-article
Authors Haiguang Liu, John C.H. Spence
Citation Liu, H. & Spence, J.C.H., 2014. The indexing ambiguity in serial femtosecond crystallography (SFX) resolved using an expectation maximization algorithm. IUCrJ, 1(6), pp.393-401.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Tom Pardini, Sébastien Boutet, Joseph Bradley, Tilo Doeppner, Luke B. Fletcher, Dennis F. Gardner, Randy M. Hill, Mark S. Hunter, Jacek Krzywinski, Marc Messerschmidt, Arthur E. Pak, Florian Quirin, Klaus Sokolowski-Tinten, Garth J. Williams, Stefan P. Hau-Riege
Citation Pardini, T. et al., 2014. Silicon single crystal as back-reflector for high-intensity hard x-rays S. P. Hau-Riege, S. P. Moeller, & M. Yabashi, eds. X-Ray Free-Electron Lasers: Beam Diagnostics, Beamline Instrumentation, and Applications II.
Type Proceedings-article
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Citation Bionta, M.R. et al., 2014. Spectral encoding method for measuring the relative arrival time between x-ray/optical pulses. Review of Scientific Instruments, 85(8), p.083116.
Type Journal-article
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Citation Karkehabadi, S. et al., 2014. Biochemical Characterization and Crystal Structures of a Fungal Family 3  -Glucosidase, Cel3A from Hypocrea jecorina. Journal of Biological Chemistry, 289(45), pp.31624-31637.
Type Journal-article
Authors Kevin K. Desai, Craig A. Bingman, Chin L. Cheng, George N. Phillips, Ronald T. Raines
Citation Desai, K.K. et al., 2014. Structure of RNA 3′-phosphate cyclase bound to substrate RNA. RNA, 20(10), pp.1560-1566.
Type Journal-article
Authors K. Tiedtke, A. A. Sorokin, U. Jastrow, P. Juranić, S. Kreis, N. Gerken, M. Richter, U. Arp, Y. Feng, D. Nordlund, R. Soufli, M. Fernández-Perea, L. Juha, P. Heimann, B. Nagler, H. J. Lee, S. Mack, M. Cammarata, O. Krupin, M. Messerschmidt, M. Holmes, M. Rowen, W. Schlotter, S. Moeller, J. J. Turner
Citation Tiedtke, K. et al., 2014. Absolute pulse energy measurements of soft x-rays at the Linac Coherent Light Source. Optics Express, 22(18), p.21214.
Type Journal-article
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Citation Gong, Z. et al., 2014. Recombinant expression, purification, and biophysical characterization of the transmembrane and membrane proximal domains of HIV-1 gp41. Protein Science, 23(11), pp.1607-1618.
Type Journal-article
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Citation Azubel, M. et al., 2014. Electron microscopy of gold nanoparticles at atomic resolution. Science, 345(6199), pp.909-912.
Type Journal-article
Authors Ho-Hsien Lee, Irene Cherni, HongQi Yu, Raimund Fromme, Jeffrey D. Doran, Ingo Grotjohann, Michele Mittman, Shibom Basu, Arpan Deb, Katerina Dörner, Andrew Aquila, Anton Barty, Sébastien Boutet, Henry N. Chapman, R. Bruce Doak, Mark S. Hunter, Daniel James, Richard A. Kirian, Christopher Kupitz, Robert M. Lawrence, Haiguang Liu, Karol Nass, Ilme Schlichting, Kevin E. Schmidt, M. Marvin Seibert, Robert L. Shoeman, John C. H. Spence, Francesco Stellato, Uwe Weierstall, Garth J. Williams, Chunhong Yoon, Dingjie Wang, Nadia A. Zatsepin, Brenda G. Hogue, Nobuyuki Matoba, Petra Fromme, Tsafrir S. Mor
Citation Lee, H.-H. et al., 2014. Expression, purification and crystallization of CTB-MPR, a candidate mucosal vaccine component against HIV-1. IUCrJ, 1(5), pp.305-317.
Type Journal-article
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Citation Sawaya, M.R. et al., 2014. Protein crystal structure obtained at 2.9 A resolution from injecting bacterial cells into an X-ray free-electron laser beam. Proceedings of the National Academy of Sciences, 111(35), pp.12769-12774.
Type Journal-article
Authors S. Stern, L. Holmegaard, F. Filsinger, A. Rouzée, A. Rudenko, P. Johnsson, A. V. Martin, A. Barty, C. Bostedt, J. Bozek, R. Coffee, S. Epp, B. Erk, L. Foucar, R. Hartmann, N. Kimmel, K-U. Kühnel, J. Maurer, M. Messerschmidt, B. Rudek, D. Starodub, J. Thøgersen, G. Weidenspointner, T. A. White, H. Stapelfeldt, D. Rolles, H. N. Chapman, J. Küpper
Citation Stern, S. et al., 2014. Toward atomic resolution diffractive imaging of isolated molecules with X-ray free-electron lasers. Faraday Discuss., 171, pp.393-418.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Wei Liu, Andrii Ishchenko, Vadim Cherezov
Citation Liu, W., Ishchenko, A. & Cherezov, V., 2014. Preparation of microcrystals in lipidic cubic phase for serial femtosecond crystallography. Nature Protocols, 9(9), pp.2123-2134.
Type Journal-article
Authors Mark S. Hunter, Brent Segelke, Marc Messerschmidt, Garth J. Williams, Nadia A. Zatsepin, Anton Barty, W. Henry Benner, David B. Carlson, Matthew Coleman, Alexander Graf, Stefan P. Hau-Riege, Tommaso Pardini, M. Marvin Seibert, James Evans, Sébastien Boutet, Matthias Frank
Citation Hunter, M.S. et al., 2014. Fixed-target protein serial microcrystallography with an x-ray free electron laser. Scientific Reports, 4.
Type Journal-article
Authors David Arnlund, Linda C Johansson, Cecilia Wickstrand, Anton Barty, Garth J Williams, Erik Malmerberg, Jan Davidsson, Despina Milathianaki, Daniel P DePonte, Robert L Shoeman, Dingjie Wang, Daniel James, Gergely Katona, Sebastian Westenhoff, Thomas A White, Andrew Aquila, Sadia Bari, Peter Berntsen, Mike Bogan, Tim Brandt van Driel, R Bruce Doak, Kasper Skov Kjær, Matthias Frank, Raimund Fromme, Ingo Grotjohann, Robert Henning, Mark S Hunter, Richard A Kirian, Irina Kosheleva, Christopher Kupitz, Mengning Liang, Andrew V Martin, Martin Meedom Nielsen, Marc Messerschmidt, M Marvin Seibert, Jennie Sjöhamn, Francesco Stellato, Uwe Weierstall, Nadia A Zatsepin, John C H Spence, Petra Fromme, Ilme Schlichting, Sébastien Boutet, Gerrit Groenhof, Henry N Chapman, Richard Neutze
Citation Arnlund, D. et al., 2014. Visualizing a protein quake with time-resolved X-ray scattering at a free-electron laser. Nature Methods, 11(9), pp.923-926.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Rahel A Woldeyes, David A Sivak, James S Fraser
Citation Woldeyes, R.A., Sivak, D.A. & Fraser, J.S., 2014. E pluribus unum, no more: from one crystal, many conformations. Current Opinion in Structural Biology, 28, pp.56-62.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Adam J Book, Ragothaman M Yennamalli, Taichi E Takasuka, Cameron R Currie, George N Phillips, Brian G Fox
Citation Book, A.J. et al., 2014. Evolution of substrate specificity in bacterial AA10 lytic polysaccharide monooxygenases. Biotechnology for Biofuels, 7(1), p.109.
Type Journal-article
Authors Hongnan Cao, Jonathan D. Walton, Phil Brumm, George N. Phillips
Citation Cao, H. et al., 2014. Structure and Substrate Specificity of a Eukaryotic Fucosidase fromFusarium graminearum. Journal of Biological Chemistry, 289(37), pp.25624-25638.
Type Journal-article
Authors
Citation Anon, 2014. Correction: Comparing Chemistry to Outcome: The Development of a Chemical Distance Metric, Coupled with Clustering and Hierarchal Visualization Applied to Macromolecular Crystallography. PLoS ONE, 9(8), p.e105260.
Type Journal-article
Authors Sherif I. Elshahawi, Theresa A. Ramelot, Jayaraman Seetharaman, Jing Chen, Shanteri Singh, Yunhuang Yang, Kari Pederson, Madan K. Kharel, Rong Xiao, Scott Lew, Ragothaman M. Yennamalli, Mitchell D. Miller, Fengbin Wang, Liang Tong, Gaetano T. Montelione, Michael A. Kennedy, Craig A. Bingman, Haining Zhu, George N. Phillips, Jon S. Thorson
Citation Elshahawi, S.I. et al., 2014. Structure-Guided Functional Characterization of Enediyne Self-Sacrifice Resistance Proteins, CalU16 and CalU19. ACS Chemical Biology, 9(10), pp.2347-2358.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Rebecca Boll, Arnaud Rouzée, Marcus Adolph, Denis Anielski, Andrew Aquila, Sadia Bari, Cédric Bomme, Christoph Bostedt, John D. Bozek, Henry N. Chapman, Lauge Christensen, Ryan Coffee, Niccola Coppola, Sankar De, Piero Decleva, Sascha W. Epp, Benjamin Erk, Frank Filsinger, Lutz Foucar, Tais Gorkhover, Lars Gumprecht, André Hömke, Lotte Holmegaard, Per Johnsson, Jens S. Kienitz, Thomas Kierspel, Faton Krasniqi, Kai-Uwe Kühnel, Jochen Maurer, Marc Messerschmidt, Robert Moshammer, Nele L. M. Müller, Benedikt Rudek, Evgeny Savelyev, Ilme Schlichting, Carlo Schmidt, Frank Scholz, Sebastian Schorb, Joachim Schulz, Jörn Seltmann, Mauro Stener, Stephan Stern, Simone Techert, Jan Thøgersen, Sebastian Trippel, Jens Viefhaus, Marc Vrakking, Henrik Stapelfeldt, Jochen Küpper, Joachim Ullrich, Artem Rudenko, Daniel Rolles
Citation Boll, R. et al., 2014. Imaging molecular structure through femtosecond photoelectron diffraction on aligned and oriented gas-phase molecules. Faraday Discuss., 171, pp.57-80.
Type Journal-article
Authors Alexandre Gidon, Mohammad M Al-Bataineh, Frederic G Jean-Alphonse, Hilary P Stevenson, Tomoyuki Watanabe, Claire Louet, Ashok Khatri, Guillermo Calero, Núria M Pastor-Soler, Thomas J Gardella, Jean-Pierre Vilardaga
Citation Gidon, A. et al., 2014. Endosomal GPCR signaling turned off by negative feedback actions of PKA and v-ATPase. Nature Chemical Biology, 10(9), pp.707-709.
Type Journal-article
Authors Guillermo Calero, Aina E. Cohen, Joseph R. Luft, Janet Newman, Edward H. Snell
Citation Calero, G. et al., 2014. Identifying, studying and making good use of macromolecular crystals. Acta Crystallogr Sect F Struct Biol Cryst Commun, 70(8), pp.993-1008.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Katrin R. Siefermann, Chaitanya D. Pemmaraju, Stefan Neppl, Andrey Shavorskiy, Amy A. Cordones, Josh Vura-Weis, Daniel S. Slaughter, Felix P. Sturm, Fabian Weise, Hendrik Bluhm, Matthew L. Strader, Hana Cho, Ming-Fu Lin, Camila Bacellar, Champak Khurmi, Jinghua Guo, Giacomo Coslovich, Joseph S. Robinson, Robert A. Kaindl, Robert W. Schoenlein, Ali Belkacem, Daniel M. Neumark, Stephen R. Leone, Dennis Nordlund, Hirohito Ogasawara, Oleg Krupin, Joshua J. Turner, William F. Schlotter, Michael R. Holmes, Marc Messerschmidt, Michael P. Minitti, Sheraz Gul, Jin Z. Zhang, Nils Huse, David Prendergast, Oliver Gessner
Citation Siefermann, K.R. et al., 2014. Atomic-Scale Perspective of Ultrafast Charge Transfer at a Dye-Semiconductor Interface. The Journal of Physical Chemistry Letters, 5(15), pp.2753-2759.
Type Journal-article
Authors Jan Kern, Rosalie Tran, Roberto Alonso-Mori, Sergey Koroidov, Nathaniel Echols, Johan Hattne, Mohamed Ibrahim, Sheraz Gul, Hartawan Laksmono, Raymond G. Sierra, Richard J. Gildea, Guangye Han, Julia Hellmich, Benedikt Lassalle-Kaiser, Ruchira Chatterjee, Aaron S. Brewster, Claudiu A. Stan, Carina Glöckner, Alyssa Lampe, Dörte DiFiore, Despina Milathianaki, Alan R. Fry, M. Marvin Seibert, Jason E. Koglin, Erik Gallo, Jens Uhlig, Dimosthenis Sokaras, Tsu-Chien Weng, Petrus H. Zwart, David E. Skinner, Michael J. Bogan, Marc Messerschmidt, Pieter Glatzel, Garth J. Williams, Sébastien Boutet, Paul D. Adams, Athina Zouni, Johannes Messinger, Nicholas K. Sauter, Uwe Bergmann, Junko Yano, Vittal K. Yachandra
Citation Kern, J. et al., 2014. Taking snapshots of photosynthetic water oxidation using femtosecond X-ray diffraction and spectroscopy. Nature Communications, 5.
Type Journal-article
Authors Christopher Kupitz, Shibom Basu, Ingo Grotjohann, Raimund Fromme, Nadia A. Zatsepin, Kimberly N. Rendek, Mark S. Hunter, Robert L. Shoeman, Thomas A. White, Dingjie Wang, Daniel James, Jay-How Yang, Danielle E. Cobb, Brenda Reeder, Raymond G. Sierra, Haiguang Liu, Anton Barty, Andrew L. Aquila, Daniel Deponte, Richard A. Kirian, Sadia Bari, Jesse J. Bergkamp, Kenneth R. Beyerlein, Michael J. Bogan, Carl Caleman, Tzu-Chiao Chao, Chelsie E. Conrad, Katherine M. Davis, Holger Fleckenstein, Lorenzo Galli, Stefan P. Hau-Riege, Stephan Kassemeyer, Hartawan Laksmono, Mengning Liang, Lukas Lomb, Stefano Marchesini, Andrew V. Martin, Marc Messerschmidt, Despina Milathianaki, Karol Nass, Alexandra Ros, Shatabdi Roy-Chowdhury, Kevin Schmidt, Marvin Seibert, Jan Steinbrener, Francesco Stellato, Lifen Yan, Chunhong Yoon, Thomas A. Moore, Ana L. Moore, Yulia Pushkar, Garth J. Williams, Sébastien Boutet, R. Bruce Doak, Uwe Weierstall, Matthias Frank, Henry N. Chapman, John C. H. Spence, Petra Fromme
Citation Kupitz, C. et al., 2014. Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser. Nature, 513(7517), pp.261-265.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Yujie Chen, Joshua M. Tokuda, Traci Topping, Julie L. Sutton, Steve P. Meisburger, Suzette A. Pabit, Lisa M. Gloss, Lois Pollack
Citation Chen, Y. et al., 2014. Revealing transient structures of nucleosomes as DNA unwinds. Nucleic Acids Research, 42(13), pp.8767-8776.
Type Journal-article
Authors Diana Fusco, Timothy J. Barnum, Andrew E. Bruno, Joseph R. Luft, Edward H. Snell, Sayan Mukherjee, Patrick Charbonneau
Citation Fusco, D. et al., 2014. Statistical Analysis of Crystallization Database Links Protein Physico-Chemical Features with Crystallization Mechanisms B. Kobe, ed. PLoS ONE, 9(7), p.e101123.
Type Journal-article
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Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors J. R. Gallant, L. L. Traeger, J. D. Volkening, H. Moffett, P.-H. Chen, C. D. Novina, G. N. Phillips, R. Anand, G. B. Wells, M. Pinch, R. Guth, G. A. Unguez, J. S. Albert, H. H. Zakon, M. P. Samanta, M. R. Sussman
Citation Gallant, J.R. et al., 2014. Genomic basis for the convergent evolution of electric organs. Science, 344(6191), pp.1522-1525.
Type Journal-article
Authors Joseph R. Luft, Janet Newman, Edward H. Snell
Citation Luft, J.R., Newman, J. & Snell, E.H., 2014. Crystallization screening: the influence of history on current practice. Acta Crystallographica Section F Structural Biology Communications, 70(7), pp.835-853.
Type Journal-article
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Citation Sellberg, J.A. et al., 2014. Ultrafast X-ray probing of water structure below the homogeneous ice nucleation temperature. Nature, 510(7505), pp.381-384.
Type Journal-article
Authors Jo E. Lomax, Christopher M. Bianchetti, Aram Chang, George N. Phillips, Brian G. Fox, Ronald T. Raines
Citation Lomax, J.E. et al., 2014. Functional Evolution of Ribonuclease Inhibitor: Insights from Birds and Reptiles. Journal of Molecular Biology, 426(17), pp.3041-3056.
Type Journal-article
Authors Sojin Moon, Ryan M. Bannen, Thomas J. Rutkoski, George N. Phillips, Euiyoung Bae
Citation Moon, S. et al., 2014. Effectiveness and limitations of local structural entropy optimization in the thermal stabilization of mesophilic and thermophilic adenylate kinases. Proteins: Structure, Function, and Bioinformatics, 82(10), pp.2631-2642.
Type Journal-article
Authors Geoffrey K Feld, Matthias Frank
Citation Feld, G.K. & Frank, M., 2014. Enabling membrane protein structure and dynamics with X-ray free electron lasers. Current Opinion in Structural Biology, 27, pp.69-78.
Type Journal-article
Authors D Rolles, R Boll, M Adolph, A Aquila, C Bostedt, J D Bozek, H N Chapman, R Coffee, N Coppola, P Decleva, T Delmas, S W Epp, B Erk, F Filsinger, L Foucar, L Gumprecht, A Hömke, T Gorkhover, L Holmegaard, P Johnsson, Ch Kaiser, F Krasniqi, K-U Kühnel, J Maurer, M Messerschmidt, R Moshammer, W Quevedo, I Rajkovic, A Rouzée, B Rudek, I Schlichting, C Schmidt, S Schorb, C D Schröter, J Schulz, H Stapelfeldt, M Stener, S Stern, S Techert, J Thøgersen, M J J Vrakking, A Rudenko, J Küpper, J Ullrich
Citation Rolles, D. et al., 2014. Femtosecond x-ray photoelectron diffraction on gas-phase dibromobenzene molecules. Journal of Physics B: Atomic, Molecular and Optical Physics, 47(12), p.124035.
Type Journal-article
Authors H. N. Chapman, C. Caleman, N. Timneanu
Citation Chapman, H.N., Caleman, C. & Timneanu, N., 2014. Diffraction before destruction. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130313-20130313.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors W. Liu, D. Wacker, C. Wang, E. Abola, V. Cherezov
Citation Liu, W. et al., 2014. Femtosecond crystallography of membrane proteins in the lipidic cubic phase. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130314-20130314.
Type Journal-article
Authors C. Kupitz, I. Grotjohann, C. E. Conrad, S. Roy-Chowdhury, R. Fromme, P. Fromme
Citation Kupitz, C. et al., 2014. Microcrystallization techniques for serial femtosecond crystallography using photosystem II from Thermosynechococcus elongatus as a model system. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130316-20130316.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors J. C. H. Spence, N. A. Zatsepin, C. Li
Citation Spence, J.C.H., Zatsepin, N.A. & Li, C., 2014. Coherent convergent-beam time-resolved X-ray diffraction. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130325-20130325.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors A. Hosseinizadeh, P. Schwander, A. Dashti, R. Fung, R. M. D'Souza, A. Ourmazd
Citation Hosseinizadeh, A. et al., 2014. High-resolution structure of viruses from random diffraction snapshots. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130326-20130326.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors R. A. Kirian, R. J. Bean, K. R. Beyerlein, O. M. Yefanov, T. A. White, A. Barty, H. N. Chapman
Citation Kirian, R.A. et al., 2014. Phasing coherently illuminated nanocrystals bounded by partial unit cells. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130331-20130331.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors O. Yefanov, C. Gati, G. Bourenkov, R. A. Kirian, T. A. White, J. C. H. Spence, H. N. Chapman, A. Barty
Citation Yefanov, O. et al., 2014. Mapping the continuous reciprocal space intensity distribution of X-ray serial crystallography. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130333-20130333.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors U. Weierstall
Citation Weierstall, U., 2014. Liquid sample delivery techniques for serial femtosecond crystallography. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130337-20130337.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors B. Pedrini, C.-J. Tsai, G. Capitani, C. Padeste, M. S. Hunter, N. A. Zatsepin, A. Barty, W. H. Benner, S. Boutet, G. K. Feld, S. P. Hau-Riege, R. A. Kirian, C. Kupitz, M. Messerschmitt, J. I. Ogren, T. Pardini, B. Segelke, G. J. Williams, J. C. H. Spence, R. Abela, M. Coleman, J. E. Evans, G. F. X. Schertler, M. Frank, X.-D. Li
Citation Pedrini, B. et al., 2014. 7 A resolution in protein two-dimensional-crystal X-ray diffraction at Linac Coherent Light Source. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130500-20130500.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors P. Schwander, R. Fung, A. Ourmazd
Citation Schwander, P., Fung, R. & Ourmazd, A., 2014. Conformations of macromolecules and their complexes from heterogeneous datasets. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130567-20130567.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors K. Pande, P. Schwander, M. Schmidt, D. K. Saldin
Citation Pande, K. et al., 2014. Deducing fast electron density changes in randomly orientated uncrystallized biomolecules in a pump-probe experiment. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130332-20130332.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors M. Caffrey, D. Li, N. Howe, S. T. A. Shah
Citation Caffrey, M. et al., 2014. "Hit and run" serial femtosecond crystallography of a membrane kinase in the lipid cubic phase. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1647), pp.20130621-20130621.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Diling Zhu, Yiping Feng, Stanislav Stoupin, Sergey A. Terentyev, Henrik T. Lemke, David M. Fritz, Matthieu Chollet, J. M. Glownia, Roberto Alonso-Mori, Marcin Sikorski, Sanghoon Song, Tim B. van Driel, Garth J. Williams, Marc Messerschmidt, Sébastien Boutet, Vladimir D. Blank, Yuri V. Shvyd'ko, Aymeric Robert
Citation Zhu, D. et al., 2014. Performance of a beam-multiplexing diamond crystal monochromator at the Linac Coherent Light Source. Review of Scientific Instruments, 85(6), p.063106.
Type Journal-article
Authors Asuka Nakano, Jinghui Luo, Alexandra Ros
Citation Nakano, A., Luo, J. & Ros, A., 2014. Temporal and Spatial Temperature Measurement in Insulator-Based Dielectrophoretic Devices. Analytical Chemistry, 86(13), pp.6516-6524.
Type Journal-article
Authors Chufeng Li, Ganesh Subramanian, John C.H. Spence
Citation Li, C., Subramanian, G. & Spence, J.C.H., 2014. Time-Resolved Spectra from Millivolt EELS Data. Microscopy and Microanalysis, 20(03), pp.837-846.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Daniel A. Keedy, Henry van den Bedem, David A. Sivak, Gregory A. Petsko, Dagmar Ringe, Mark A. Wilson, James S. Fraser
Citation Keedy, D.A. et al., 2014. Crystal Cryocooling Distorts Conformational Heterogeneity in a Model Michaelis Complex of DHFR. Structure, 22(6), pp.899-910.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors H. P. Stevenson, A. M. Makhov, M. Calero, A. L. Edwards, O. B. Zeldin, I. I. Mathews, G. Lin, C. O. Barnes, H. Santamaria, T. M. Ross, S. M. Soltis, C. Khosla, V. Nagarajan, J. F. Conway, A. E. Cohen, G. Calero
Citation Stevenson, H.P. et al., 2014. Use of transmission electron microscopy to identify nanocrystals of challenging protein targets. Proceedings of the National Academy of Sciences, 111(23), pp.8470-8475.
Type Journal-article
Authors Tom Pardini, Sébastien Boutet, Joseph Bradley, Tilo Döppner, Luke B. Fletcher, Dennis F. Gardner, Randy M. Hill, Mark S. Hunter, Jacek Krzywinski, Marc Messerschmidt, Arthur E. Pak, Florian Quirin, Klaus Sokolowski-Tinten, Garth J. Williams, Stefan P. Hau-Riege
Citation Pardini, T. et al., 2014. Silicon Mirrors for High-Intensity X-Ray Pump and Probe Experiments. Physical Review Applied, 1(4).
Type Journal-article
Authors Joseph R. Luft, Thomas D. Grant, Jennifer R. Wolfley, Edward H. Snell
Citation Luft, J.R. et al., 2014. A new view on crystal harvesting. J Appl Crystallogr, 47(3), pp.1158-1161.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Ragothaman Yennamalli, Raj Arangarasan, Aaron Bryden, Michael Gleicher, George N. Phillips
Citation Yennamalli, R. et al., 2014. Using a commodity high-definition television for collaborative structural biology. J Appl Crystallogr, 47(3), pp.1153-1157.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Marcus Fischer, Ryan G. Coleman, James S. Fraser, Brian K. Shoichet
Citation Fischer, M. et al., 2014. Incorporation of protein flexibility and conformational energy penalties in docking screens to improve ligand discovery. Nature Chemistry, 6(7), pp.575-583.
Type Journal-article
Authors Justin D. Flory, Chad R. Simmons, Su Lin, Trey Johnson, Alessio Andreoni, James Zook, Giovanna Ghirlanda, Yan Liu, Hao Yan, Petra Fromme
Citation Flory, J.D. et al., 2014. Low Temperature Assembly of Functional 3D DNA-PNA-Protein Complexes. Journal of the American Chemical Society, 136(23), pp.8283-8295.
Type Journal-article
Authors Ivan Komarov, Ali Dashti, Roshan M. D'Souza
Citation Komarov, I., Dashti, A. & D'Souza, R.M., 2014. Fast k-NNG Construction with GPU-Based Quick Multi-Select M. Gomez-Gesteira, ed. PLoS ONE, 9(5), p.e92409.
Type Journal-article
Authors John C.H. Spence
Citation Spence, J.C.H., 2014. X-ray lasers and crystallography. IUCrJ, 1(3), pp.151-152.
Type Journal-article
Authors V. Schweikhard, C. Meng, K. Murakami, C. D. Kaplan, R. D. Kornberg, S. M. Block
Citation Schweikhard, V. et al., 2014. Transcription factors TFIIF and TFIIS promote transcript elongation by RNA polymerase II by synergistic and independent mechanisms. Proceedings of the National Academy of Sciences, 111(18), pp.6642-6647.
Type Journal-article
Authors M Mucke, V Zhaunerchyk, R J Squibb, M Kamińska, J H D Eland, P v d Meulen, P Salén, P Linusson, R D Thomas, M Larsson, L J Frasinski, M Siano, T Osipov, L Fang, B Murphy, N Berrah, L Foucar, J Ullrich, K Motomura, S Mondal, K Ueda, R Richter, K C Prince, M N Piancastelli, M Glownia, J Cryan, R Coffee, C Bostedt, J Bozek, S Schorb, M Messerschmidt, O Takahashi, S Wada, R Feifel
Citation Mucke, M. et al., 2014. Mapping the decay of double core hole states of atoms and molecules. Journal of Physics: Conference Series, 488(3), p.032021.
Type Journal-article
Authors Jasper J. van Thor, Mark M. Warren, Craig N. Lincoln, Matthieu Chollet, Henrik Till Lemke, David M. Fritz, Marius Schmidt, Jason Tenboer, Zhong Ren, Vukica Srajer, Keith Moffat, Tim Graber
Citation Van Thor, J.J. et al., 2014. Signal to noise considerations for single crystal femtosecond time resolved crystallography of the Photoactive Yellow Protein. Faraday Discuss., 171, pp.439-455.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors G A Carini, S Boutet, M Chollet, A Dragone, G Haller, P A Hart, S C Herrmann, C J Kenney, J Koglin, M Messerschmidt, S Nelson, J Pines, A Robert, S Song, J B Thayer, G J Williams, D Zhu
Citation Carini, G.A. et al., 2014. Experience with the CSPAD during dedicated detector runs at LCLS. Journal of Physics: Conference Series, 493, p.012011.
Type Journal-article
Authors Marius Schmidt, Dilano K. Saldin
Citation Schmidt, M. & Saldin, D.K., 2014. Enzyme transient state kinetics in crystal and solution from the perspective of a time-resolved crystallographer. Structural Dynamics, 1(2), p.024701.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Matthias Fuchs
Citation Fuchs, M., 2014. Nonlinear X-ray Compton Scattering. Research in Optical Sciences.
Type Proceedings-article
Authors John C. H. Spence
Citation Spence, J.C.H., 2014. Approaches to time-resolved diffraction using an XFEL. Faraday Discuss., 171, pp.429-438.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Yang Ouk Jung, Jae Hyuk Lee, Joonghan Kim, Marius Schmidt, Keith Moffat, Vukica Šrajer, Hyotcherl Ihee
Citation Jung, Y.O. et al., 2014. Reply to "Contradictions in X-ray structures of intermediates in the photocycle of photoactive yellow protein." Nature Chem, 6(4), pp.259-260.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Fengbin Wang, Shanteri Singh, Jianjun Zhang, Tyler D. Huber, Kate E. Helmich, Manjula Sunkara, Katherine A. Hurley, Randal D. Goff, Craig A. Bingman, Andrew J. Morris, Jon S. Thorson, George N. Phillips
Citation Wang, F. et al., 2014. Understanding molecular recognition of promiscuity of thermophilic methionine adenosyltransferase sMAT fromSulfolobus solfataricus. FEBS Journal, 281(18), pp.4224-4239.
Type Journal-article
Authors J. Szlachetko, C. J. Milne, J. Hoszowska, J.-Cl. Dousse, W. Błachucki, J. Sà, Y. Kayser, M. Messerschmidt, R. Abela, S. Boutet, C. David, G. Williams, M. Pajek, B. D. Patterson, G. Smolentsev, J. A. van Bokhoven, M. Nachtegaal
Citation Szlachetko, J. et al., 2014. Communication: The electronic structure of matter probed with a single femtosecond hard x-ray pulse. Structural Dynamics, 1(2), p.021101.
Type Journal-article
Authors Johan Hattne, Nathaniel Echols, Rosalie Tran, Jan Kern, Richard J Gildea, Aaron S Brewster, Roberto Alonso-Mori, Carina Glöckner, Julia Hellmich, Hartawan Laksmono, Raymond G Sierra, Benedikt Lassalle-Kaiser, Alyssa Lampe, Guangye Han, Sheraz Gul, Dörte DiFiore, Despina Milathianaki, Alan R Fry, Alan Miahnahri, William E White, Donald W Schafer, M Marvin Seibert, Jason E Koglin, Dimosthenis Sokaras, Tsu-Chien Weng, Jonas Sellberg, Matthew J Latimer, Pieter Glatzel, Petrus H Zwart, Ralf W Grosse-Kunstleve, Michael J Bogan, Marc Messerschmidt, Garth J Williams, Sébastien Boutet, Johannes Messinger, Athina Zouni, Junko Yano, Uwe Bergmann, Vittal K Yachandra, Paul D Adams, Nicholas K Sauter
Citation Hattne, J. et al., 2014. Accurate macromolecular structures using minimal measurements from X-ray free-electron lasers. Nature Methods, 11(5), pp.545-548.
Type Journal-article
Authors D.S. Rackstraw, S.M. Vinko, O. Ciricosta, B.I. Cho, K. Engelhorn, H.-K. Chung, C.R.D. Brown, T. Burian, J. Chalupský, R.W. Falcone, C. Graves, V. Hájková, A. Higginbotham, L. Juha, J. Krzywinski, H.J. Lee, M. Messerschmidt, C. Murphy, Y. Ping, A. Scherz, W. Schlotter, S. Toleikis, J.J. Turner, L. Vysin, T. Wang, B. Wu, U. Zastrau, D. Zhu, B. Nagler, R.W. Lee, P.A. Heimann, J.S. Wark
Citation Rackstraw, D.S. et al., 2014. Opacity effects in a solid-density aluminium plasma created by photo-excitation with an X-ray laser. High Energy Density Physics, 11, pp.59-69.
Type Journal-article
Authors Sojin Moon, Du-kyo Jung, George N. Phillips, Euiyoung Bae
Citation Moon, S. et al., 2014. An integrated approach for thermal stabilization of a mesophilic adenylate kinase. Proteins: Structure, Function, and Bioinformatics, 82(9), pp.1947-1959.
Type Journal-article
Authors Jochen Küpper, Stephan Stern, Lotte Holmegaard, Frank Filsinger, Arnaud Rouzée, Artem Rudenko, Per Johnsson, Andrew V. Martin, Marcus Adolph, Andrew Aquila, Saša Bajt, Anton Barty, Christoph Bostedt, John Bozek, Carl Caleman, Ryan Coffee, Nicola Coppola, Tjark Delmas, Sascha Epp, Benjamin Erk, Lutz Foucar, Tais Gorkhover, Lars Gumprecht, Andreas Hartmann, Robert Hartmann, Günter Hauser, Peter Holl, Andre Hömke, Nils Kimmel, Faton Krasniqi, Kai-Uwe Kühnel, Jochen Maurer, Marc Messerschmidt, Robert Moshammer, Christian Reich, Benedikt Rudek, Robin Santra, Ilme Schlichting, Carlo Schmidt, Sebastian Schorb, Joachim Schulz, Heike Soltau, John C. H. Spence, Dmitri Starodub, Lothar Strüder, Jan Thøgersen, Marc J. J. Vrakking, Georg Weidenspointner, Thomas A. White, Cornelia Wunderer, Gerard Meijer, Joachim Ullrich, Henrik Stapelfeldt, Daniel Rolles, Henry N. Chapman
Citation Küpper, J. et al., 2014. X-Ray Diffraction from Isolated and Strongly Aligned Gas-Phase Molecules with a Free-Electron Laser. Physical Review Letters, 112(8).
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Jose M. Martin-Garcia, Debra T. Hansen, James Zook, Andrey V. Loskutov, Mark D. Robida, Felicia M. Craciunescu, Kathryn F. Sykes, Rebekka M. Wachter, Petra Fromme, James P. Allen
Citation Martin-Garcia, J.M. et al., 2014. Purification and Biophysical Characterization of the CapA Membrane Protein FTT0807 fromFrancisella tularensis. Biochemistry, 53(12), pp.1958-1970.
Type Journal-article
Authors Jinghui Luo, Bahige G. Abdallah, Gregory G. Wolken, Edgar A. Arriaga, Alexandra Ros
Citation Luo, J. et al., 2014. Insulator-based dielectrophoresis of mitochondria. Biomicrofluidics, 8(2), p.021801.
Type Journal-article
Authors Uwe Weierstall, Daniel James, Chong Wang, Thomas A. White, Dingjie Wang, Wei Liu, John C. H. Spence, R. Bruce Doak, Garrett Nelson, Petra Fromme, Raimund Fromme, Ingo Grotjohann, Christopher Kupitz, Nadia A. Zatsepin, Haiguang Liu, Shibom Basu, Daniel Wacker, Gye Won Han, Vsevolod Katritch, Sébastien Boutet, Marc Messerschmidt, Garth J. Williams, Jason E. Koglin, M. Marvin Seibert, Markus Klinker, Cornelius Gati, Robert L. Shoeman, Anton Barty, Henry N. Chapman, Richard A. Kirian, Kenneth R. Beyerlein, Raymond C. Stevens, Dianfan Li, Syed T. A. Shah, Nicole Howe, Martin Caffrey, Vadim Cherezov
Citation Weierstall, U. et al., 2014. Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography. Nat Comms, 5.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Matthias Frank, David B. Carlson, Mark S. Hunter, Garth J. Williams, Marc Messerschmidt, Nadia A. Zatsepin, Anton Barty, W. Henry Benner, Kaiqin Chu, Alexander T. Graf, Stefan P. Hau-Riege, Richard A. Kirian, Celestino Padeste, Tommaso Pardini, Bill Pedrini, Brent Segelke, M. Marvin Seibert, John C. H. Spence, Ching-Ju Tsai, Stephen M. Lane, Xiao-Dan Li, Gebhard Schertler, Sebastien Boutet, Matthew Coleman, James E. Evans
Citation Frank, M. et al., 2014. Femtosecond X-ray diffraction from two-dimensional protein crystals. IUCrJ, 1(2), pp.95-100.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors R. Paul, R. E. Jinkerson, K. Buss, J. Steel, R. Mohr, W. R. Hess, M. Chen, P. Fromme
Citation Paul, R. et al., 2014. Draft Genome Sequence of the Filamentous Cyanobacterium Leptolyngbya sp. Strain Heron Island J, Exhibiting Chromatic Acclimation. Genome Announcements, 2(1), pp.e01166-13-e01166-13.
Type Journal-article
Authors Michael E. Wall, Paul D. Adams, James S. Fraser, Nicholas K. Sauter
Citation Wall, M.E. et al., 2014. Diffuse X-Ray Scattering to Model Protein Motions. Structure, 22(2), pp.182-184.
Type Journal-article
Authors Sean McSweeney, Petra Fromme
Citation McSweeney, S. & Fromme, P., 2014. Crystallography: Sources of inspiration. Nature, 505(7485), pp.620-621.
Type Journal-article
Authors K. K. Desai, C. L. Cheng, C. A. Bingman, G. N. Phillips, R. T. Raines
Citation Desai, K.K. et al., 2014. A tRNA splicing operon: Archease endows RtcB with dual GTP/ATP cofactor specificity and accelerates RNA ligation. Nucleic Acids Research, 42(6), pp.3931-3942.
Type Journal-article
Authors Gheorghe Acbas, Katherine A. Niessen, Edward H. Snell, A.G. Markelz
Citation Acbas, G. et al., 2014. Optical measurements of long-range protein vibrations. Nature Communications, 5.
Type Journal-article
Authors Joe P. J. Chen, John C. H. Spence, Rick P. Millane
Citation Chen, J.P.J., Spence, J.C.H. & Millane, R.P., 2014. Direct phasing in femtosecond nanocrystallography. I. Diffraction characteristics. Acta Cryst Sect A Found Adv, 70(2), pp.143-153.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Joe P. J. Chen, John C. H. Spence, Rick P. Millane
Citation Chen, J.P.J., Spence, J.C.H. & Millane, R.P., 2014. Direct phasing in femtosecond nanocrystallography. II. Phase retrieval. Acta Cryst Sect A Found Adv, 70(2), pp.154-161.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors R. B. Fenwick, H. van den Bedem, J. S. Fraser, P. E. Wright
Citation Fenwick, R.B. et al., 2014. Integrated description of protein dynamics from room-temperature X-ray crystallography and NMR. Proceedings of the National Academy of Sciences, 111(4), pp.E445-E454.
Type Journal-article
Authors Sanchari Bhattacharya, Tzu-Chiao Chao, Nethmi Ariyasinghe, Yvette Ruiz, Douglas Lake, Robert Ros, Alexandra Ros
Citation Bhattacharya, S. et al., 2014. Selective trapping of single mammalian breast cancer cells by insulator-based dielectrophoresis. Analytical and Bioanalytical Chemistry, 406(7), pp.1855-1865.
Type Journal-article
Authors P. T. Lang, J. M. Holton, J. S. Fraser, T. Alber
Citation Lang, P.T. et al., 2013. Protein structural ensembles are revealed by redefining X-ray electron density noise. Proceedings of the National Academy of Sciences, 111(1), pp.237-242.
Type Journal-article
Authors W. Liu, D. Wacker, C. Gati, G. W. Han, D. James, D. Wang, G. Nelson, U. Weierstall, V. Katritch, A. Barty, N. A. Zatsepin, D. Li, M. Messerschmidt, S. Boutet, G. J. Williams, J. E. Koglin, M. M. Seibert, C. Wang, S. T. A. Shah, S. Basu, R. Fromme, C. Kupitz, K. N. Rendek, I. Grotjohann, P. Fromme, R. A. Kirian, K. R. Beyerlein, T. A. White, H. N. Chapman, M. Caffrey, J. C. H. Spence, R. C. Stevens, V. Cherezov
Citation Liu, W. et al., 2013. Serial Femtosecond Crystallography of G Protein-Coupled Receptors. Science, 342(6165), pp.1521-1524.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Linda C. Johansson, David Arnlund, Gergely Katona, Thomas A. White, Anton Barty, Daniel P. DePonte, Robert L. Shoeman, Cecilia Wickstrand, Amit Sharma, Garth J. Williams, Andrew Aquila, Michael J. Bogan, Carl Caleman, Jan Davidsson, R Bruce Doak, Matthias Frank, Raimund Fromme, Lorenzo Galli, Ingo Grotjohann, Mark S. Hunter, Stephan Kassemeyer, Richard A. Kirian, Christopher Kupitz, Mengning Liang, Lukas Lomb, Erik Malmerberg, Andrew V. Martin, Marc Messerschmidt, Karol Nass, Lars Redecke, M Marvin Seibert, Jennie Sjöhamn, Jan Steinbrener, Francesco Stellato, Dingjie Wang, Weixaio Y. Wahlgren, Uwe Weierstall, Sebastian Westenhoff, Nadia A. Zatsepin, Sébastien Boutet, John C.H. Spence, Ilme Schlichting, Henry N. Chapman, Petra Fromme, Richard Neutze
Citation Johansson, L.C. et al., 2013. Structure of a photosynthetic reaction centre determined by serial femtosecond crystallography. Nat Comms, 4.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors E. C. Mattson, J. E. Johns, K. Pande, R. A. Bosch, S. Cui, M. Gajdardziska-Josifovska, M. Weinert, J. H. Chen, M. C. Hersam, C. J. Hirschmugl
Citation Mattson, E.C. et al., 2014. Vibrational Excitations and Low-Energy Electronic Structure of Epoxide-Decorated Graphene. The Journal of Physical Chemistry Letters, 5(1), pp.212-219.
Type Journal-article
Authors A. T. Vaidya, D. Top, C. C. Manahan, J. M. Tokuda, S. Zhang, L. Pollack, M. W. Young, B. R. Crane
Citation Vaidya, A.T. et al., 2013. Flavin reduction activates Drosophila cryptochrome. Proceedings of the National Academy of Sciences, 110(51), pp.20455-20460.
Type Journal-article
Authors Jeremy R. Lohman, Ming Ma, Marianne E. Cuff, Lance Bigelow, Jessica Bearden, Gyorgy Babnigg, Andrzej Joachimiak, George N. Phillips, Ben Shen
Citation Lohman, J.R. et al., 2013. The crystal structure of BlmI as a model for nonribosomal peptide synthetase peptidyl carrier proteins. Proteins: Structure, Function, and Bioinformatics, 82(7), pp.1210-1218.
Type Journal-article
Authors Thomas R. M. Barends, Lutz Foucar, Sabine Botha, R. Bruce Doak, Robert L. Shoeman, Karol Nass, Jason E. Koglin, Garth J. Williams, Sébastien Boutet, Marc Messerschmidt, Ilme Schlichting
Citation Barends, T.R.M. et al., 2013. De novo protein crystal structure determination from X-ray free-electron laser data. Nature, 505(7482), pp.244-247.
Type Journal-article
Authors Kristin A. Sutton, Paul J. Black, Kermit R. Mercer, Elspeth F. Garman, Robin L. Owen, Edward H. Snell, William A. Bernhard
Citation Sutton, K.A. et al., 2013. Insights into the mechanism of X-ray-induced disulfide-bond cleavage in lysozyme crystals based on EPR, optical absorption and X-ray diffraction studies. Acta Crystallogr D, 69(12), pp.2381-2394.
Type Journal-article
Authors Marius Schmidt, Vukica Srajer, Robert Henning, Hyotcherl Ihee, Namrta Purwar, Jason Tenboer, Shailesh Tripathi
Citation Schmidt, M. et al., 2013. Protein energy landscapes determined by five-dimensional crystallography. Acta Crystallogr D, 69(12), pp.2534-2542.
Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors Hyung Joo Park, N. Duane Loh, Raymond G. Sierra, Christina Y. Hampton, Dmitri Starodub, Andrew V. Martin, Anton Barty, Andrew Aquila, Joachim Schulz, Jan Steinbrener, Robert L. Shoeman, Lukas Lomb, Stephan Kassemeyer, Christoph Bostedt, John Bozek, Sascha W. Epp, Benjamin Erk, Robert Hartmann, Daniel Rolles, Artem Rudenko, Benedikt Rudek, Lutz Foucar, Nils Kimmel, Georg Weidenspointner, Guenter Hauser, Peter Holl, Emanuele Pedersoli, Mengning Liang, Mark S. Hunter, Lars Gumprecht, Nicola Coppola, Cornelia Wunderer, Heinz Graafsma, Filipe R.N.C. Maia, Tomas Ekeberg, Max Hantke, Holger Fleckenstein, Helmut Hirsemann, Karol Nass, Herbert J. Tobias, George R. Farquar, W. Henry Benner, Stefan Hau-Riege, Christian Reich, Andreas Hartmann, Heike Soltau, Stefano Marchesini, Sasa Bajt, Miriam Barthelmess, Lothar Strueder, Joachim Ullrich, Philip Bucksbaum, Matthias Frank, Ilme Schlichting, Henry N. Chapman, Michael J. Bogan, Veit Elser
Citation Park, H.J. et al., 2013. Toward unsupervised single-shot diffractive imaging of heterogeneous particles using X-ray free-electron lasers. Optics Express, 21(23), p.28729.
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Citation Kreft, J.-U. et al., 2013. Mighty small: Observing and modeling individual microbes becomes big science. Proceedings of the National Academy of Sciences, 110(45), pp.18027-18028.
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Type Book-chapter
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Authors David A. Bushnell, Roger D. Kornberg
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Citation Christenson, W. et al., 2014. Combined single cell AFM manipulation and TIRFM for probing the molecular stability of multilayer fibrinogen matrices. Ultramicroscopy, 136, pp.211-215.
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Type Journal-article
Funding NSF-STC Biology with X-ray Lasers (NSF-1231306)
Authors K. Murakami, H. Elmlund, N. Kalisman, D. A. Bushnell, C. M. Adams, M. Azubel, D. Elmlund, Y. Levi-Kalisman, X. Liu, B. J. Gibbons, M. Levitt, R. D. Kornberg
Citation Murakami, K. et al., 2013. Architecture of an RNA Polymerase II Transcription Pre-Initiation Complex. Science, 342(6159), pp.1238724-1238724.
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Citation White, T.A. et al., 2013. Crystallographic data processing for free-electron laser sources. Acta Crystallographica Section D Biological Crystallography, 69(7), pp.1231-1240.
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Citation Clark, J.N. et al., 2013. Ultrafast Three-Dimensional Imaging of Lattice Dynamics in Individual Gold Nanocrystals. Science, 341(6141), pp.56-59.
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Authors N. Duane Loh, Dmitri Starodub, Lukas Lomb, Christina Y. Hampton, Andrew V. Martin, Raymond G. Sierra, Anton Barty, Andrew Aquila, Joachim Schulz, Jan Steinbrener, Robert L. Shoeman, Stephan Kassemeyer, Christoph Bostedt, John Bozek, Sascha W. Epp, Benjamin Erk, Robert Hartmann, Daniel Rolles, Artem Rudenko, Benedikt Rudek, Lutz Foucar, Nils Kimmel, Georg Weidenspointner, Guenter Hauser, Peter Holl, Emanuele Pedersoli, Mengning Liang, Mark S. Hunter, Lars Gumprecht, Nicola Coppola, Cornelia Wunderer, Heinz Graafsma, Filipe R.N.C. Maia, Tomas Ekeberg, Max Hantke, Holger Fleckenstein, Helmut Hirsemann, Karol Nass, Thomas A. White, Herbert J. Tobias, George R. Farquar, W. Henry Benner, Stefan Hau-Riege, Christian Reich, Andreas Hartmann, Heike Soltau, Stefano Marchesini, Sasa Bajt, Miriam Barthelmess, Lothar Strueder, Joachim Ullrich, Philip Bucksbaum, Matthias Frank, Ilme Schlichting, Henry N. Chapman, Michael J. Bogan
Citation Loh, N.D. et al., 2013. Sensing the wavefront of x-ray free-electron lasers using aerosol spheres. Optics Express, 21(10), p.12385.
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Citation Schmidt, M., 2013. Mix and Inject: Reaction Initiation by Diffusion for Time-Resolved Macromolecular Crystallography. Advances in Condensed Matter Physics, 2013, pp.1-10.
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Citation Mattson, E.C. et al., 2013. Exploring Adsorption and Reactivity of NH3on Reduced Graphene Oxide. The Journal of Physical Chemistry C, 117(20), pp.10698-10707.
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Citation Smith, D.W. et al., 2013. Crystal structure of the protein fromArabidopsis thalianagene At5g06450, a putative DnaQ-like exonuclease domain-containing protein with homohexameric assembly. Proteins: Structure, Function, and Bioinformatics, 81(9), pp.1669-1675.
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Citation Tsai, Y. et al., 2013. AutoDrug: fully automated macromolecular crystallography workflows for fragment-based drug discovery. Acta Crystallographica Section D Biological Crystallography, 69(5), pp.796-803.
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