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  1. Sarah Perry (UMass Amherst) at HWI: Microfluidics at Room Temperature Crystallography

    Events 19 Apr 2018

    Apr 19 2018

    Sarah L. Perry received BS degrees in Chemical Engineering and Chemistry from the University of Arizona, as well as a MS in Chemical Engineering working on gas phase methods for chemically passivating silicon surfaces for semiconductor manufacturing. She received her PhD from the University of Illinois at Urbana-Champaign working on microfluidic

    https://www.bioxfel.org/events/details/1180

  2. XFEL Crystal Blaster Educational Game

    Knowledge Transfer 11 Apr 2017

    BioXFEL member and undergraduate researcher, Fiacre Kabayiza, has created a game to help educate school-aged students on the topic of XFEL science. Employing a simple, yet engaging, tap-based gameplay and a time-proven minimal 8-bit graphical art style, he delivers a game that introduces tweens and teens to XFELs, structure determination, and the

    https://www.bioxfel.org/content/article/234

  3. XFEL Game - Windows Download

    Downloads 25 Oct 2016

    XFEL GameFiacre Kabayiza and Mukino GamesBioXFEL NSF Funding  

    https://www.bioxfel.org/resources/Game-Windows

  4. Signed Applet

    Tools 25 Mar 2010

    If you are behind a network firewall that requires you to use a web proxy with your browser, your Java environment will also need to use a proxy to connect to tool sessions. The default security manager for Java stipulates that an applet can make network connections only to the web server from which it was originally loaded. Connecting to a proxy

    https://www.bioxfel.org/kb/tools/applet

  5. Marco Molinaro

    Members

    Marco Molinaro

    Dr. Molinaro has a dual B.S., in Biophysics and Chemistry from Wayne State University in Detroit, Michigan and a Ph.D., in Biophysical Chemistry from the University of California, Berkeley. Since the early 1990's, he has been strongly involved in education and has a familiarity with multiple educational technologies. From 1994 through 1999, Dr.

    https://www.bioxfel.org/members/1017

  6. XFEL: Crystal Blaster

    Education 29 Sep 2016

    BioXFEL member and undergraduate researcher, Fiacre Kabayiza, has created a game to help educate school-aged students on the topic of XFEL science. Employing a simple, yet engaging, tap-based gameplay and a time-proven minimal 8-bit graphical art style, he delivers a game that introduces students to XFELs, structure determination, and the structure

    https://www.bioxfel.org/content/article/176

  7. How to enable pop-ups?

    Misc 25 Mar 2010

    Web pages can use the JavaScript language to automatically force the your web browser to open new windows. You must enable pop-ups for this site in order to do file downloads. The way in which this is done varies from browser to browser: FirefoxGo to the Edit->Preferences menu and choose the Content icon at the top of the

    https://www.bioxfel.org/kb/misc/popups

  8. How to View/Download Video Content?

    Misc 25 Mar 2010

    This hub relies on two formats of video files, MP4 (MPEG-4) mostly used for podcasts but also can be viewed directly on your computer, and Windows Media Player which is used by older lectures and seminars. We recommend VideoLAN.org's VLC - Media Player, a free cross-platform media player that supports a large number of multimedia

    https://www.bioxfel.org/kb/misc/video

  9. Synthetic nanoparticles achieve the complexity of protein molecules

    News 26 Jan 2017

    Chemists at Carnegie Mellon University have demonstrated that synthetic nanoparticles can achieve the same level of structural complexity, hierarchy and accuracy as their natural counterparts - biomolecules. The study, published in Science, also reveals the atomic-level mechanisms behind nanoparticle self-assembly.  The findings from the lab

    https://www.bioxfel.org/content/article/197

  10. How to use WebDAV to access your hub storage

    Tips 25 Mar 2010

    WebDAV is the Distributed Authoring and Versioning extension to the standard HTTP/HTTPS web protocol. It allows a client to browse a remote filesystem, usually with a graphical browser that makes it appear that your files are on your desktop. You may access your hub storage using only the secure version of this service (HTTPS). We do not support

    https://www.bioxfel.org/kb/tips/webdav

  11. Nature Research and the Biodesign Institute to co-host fall conference on imaging molecular reactions

    News 5 Sep 2019

    Some of the world’s most accomplished scientific minds will converge on Arizona State University’s Tempe campus on November 6, 7 and 8 to explore new methods that make it possible to observe molecules in action. Illustrating the adage, "seeing is believing," the conference, “Functional dynamics – visualizing molecules in action,” will

    https://www.bioxfel.org/content/article/379

  12. Troubleshoot

    Tools 25 Mar 2010

    There are two common reasons why you may not be able to view an application. The tool is internally misconfigured. If you can look at your personalized dashboard page and see that the tool you just started does not appear in the list of running sessions, it exited before it could be viewed. You should report this as a problem. The Java

    https://www.bioxfel.org/kb/tools/troubleshoot

  13. Help! I'm getting a Java error!

    Tools 25 Mar 2010

    Users may experience a Java error on Mac OS X if they are using Java version 1.3 and below. Please ensure your Java install is up to date.NOTE! For gecko browsers (Mozilla, Firefox, Camino), the following may be the source of the error: Mozilla will only use JRE 1.3.1, even if a later JRE is installed [Bug 197813]. To use a newer JRE, you will need

    https://www.bioxfel.org/kb/tools/javaerr

  14. Psana Tutorial

    Teaching Materials 3 Sep 2014

    Chris O'Grady (SLAC) Psana is the main analysis tool developed by LCLS, upon which some other tools are based. It uses a combination of C++ and python. I will discuss recent psana developments and future plans. Recent developments include the ability to express complex analysis ideas with simple python scripts; ability to run the same code offline

    https://www.bioxfel.org/resources/2014-workshop-psana

  15. 2014 Two Day Workshop on Bio-XFEL Data Analysis

    Events 21 Aug 2014

    Aug 21 2014

    Sponsored by: Click here to view the workshop tutorials 2014 Data Analysis Workshop  We are pleased to announce the first Workshop on Bio-XFEL Data Analysis, organized as a collaborative effort between the NSF BioXFEL Science and Technology Center, the Physical Biosciences Division of Lawrence Berkeley National Laboratory and SLAC

    https://www.bioxfel.org/events/details/9

  16. Structural Biology Services

    Science 4 May 2021

    The HWI Cryo-Electron Microscopy Center The Cryo-Electron Microscopy Center supports industry, academic, government, and non-profit research institutes, providing single-particle and microcrystal electron diffraction capabilities. The Cryo-EM Center at HWI provides:  Expert staff – Dr. Qiu-Xing Jiang directs the center with his team

    https://www.bioxfel.org/content/article/425

  17. Sample Preparation Guidelines

    Education 17 Dec 2019

    Important Information for the Participants of the Structural Biology with X-rays Workshop   BioSAXS Practical Sessions Information General Information: This BioSAXS part of the workshop will be focusing on the introduction to solution X-ray scattering as a method to answer questions in current structural biology research. In addition to the

    https://www.bioxfel.org/content/article/391

  18. How to Enable Cookies

    Misc 25 Mar 2010

    In order to log in to this site, you must enable cookies in your browser. Instructions for enabling cookies in common browsers are listed below. If your browser is not listed, please check its website or other browser documentation for more information. Windows IE 6/7

    https://www.bioxfel.org/kb/misc/cookies

  19. Structural biology in the time of COVID-19: perspectives on methods and milestones

    BioXFEL Publications 22 Apr 2021 Contributor(s): Miranda Lynch, Edward Snell, Sarah EJ Bowman

    http://dx.doi.org/10.1107/s2052252521003948 The global COVID-19 pandemic caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has wreaked unprecedented havoc on global society, in terms of a huge loss of life and burden of morbidity, economic upheaval and social disruption. Structural biology has been at the

    https://www.bioxfel.org/resources/1996

  20. Mapping protein dynamics at high spatial resolution with temperature-jump X-ray crystallography

    BioXFEL Publications 18 Sep 2023 Contributor(s): Iris Diane Young, James Holton, James Fraser, Michael Thompson

    http://dx.doi.org/10.1038/s41557-023-01329-4 AbstractUnderstanding and controlling protein motion at atomic resolution is a hallmark challenge for structural biologists and protein engineers because conformational dynamics are essential for complex functions such as enzyme catalysis and allosteric regulation. Time-resolved crystallography offers a

    https://www.bioxfel.org/resources/2189

  21. 7. Working with LCLS data remotely

    Series 21 Jul 2015 Contributor(s): Nadia Zatsepin

    Working with LCLS data remotely  Remote visualization The best way to access the LCLS machines remotely is via NoMachine: https://confluence.slac.stanford.edu/display/PCDS/Remote+Visualization For Windows, you can use MobaXterm for full terminal functionality, including X forwarding, ssh etc.

    https://www.bioxfel.org/resources/LCLSdata_working_remotely