Usage

Usage is calculated on the last day of every month. For more information on usage data, visit the Usage Overview page.

Table 1: Overview
Item Value
Contributions: 88
Rank by Contributions: 4 / 162
First Contribution: 09 Jan 2013
Last Contribution: 23 May 2025
Citations on Contributions: -
Table 2: Simulation Tool Usage
# Tool Name Users served in last 12 months Simulation Runs in last 12 months Total users served Total Simulation Runs Citations Published On
No data found.
Table 3: "and more" Usage
# Resource Title Users served in last 12 months Total users served Citations Published On
1 Advances in microfluidic mixers for time-resolved structural biology with X-rays BioXFEL Publications - - - 23 May 2025
2 Characterizing single-stranded RNA using SAXS and single-molecule FRET BioXFEL Publications - - - 10 Apr 2025
3 Determining the Enzymatic Mechanism of DJ-1 Using a New Approach to Mix-and-Inject Synchrotron Serial Crystallography BioXFEL Publications - - - 10 Apr 2025
4 Determining the Mechanism of DJ-1 Using Mix-and-Inject Synchrotron Serial Crystallography BioXFEL Publications - - - 10 Apr 2025
5 Time-resolved cryogenic electron tomography using mix-and-inject microfluidic devices BioXFEL Publications - - - 10 Apr 2025
6 BPS2025 - Disordered RNA conformations and nucleotide-specific dynamics within ribonucleoprotein condensates BioXFEL Publications - - - 13 Feb 2025
7 Implementation of simultaneous ultraviolet/visible and x-ray absorption spectroscopy with microfluidics BioXFEL Publications - - - 10 Jan 2025
8 Scaling and merging time-resolved pink-beam diffraction with variational inference BioXFEL Publications - - - 08 Nov 2024
9 Sequence-dependent conformational preferences of disordered single-stranded RNA BioXFEL Publications - - - 29 Oct 2024
10 Author Correction: Cation-induced intramolecular coil-to-globule transition in poly(ADP-ribose) BioXFEL Publications - - - 04 Oct 2024
11 Cation-induced intramolecular coil-to-globule transition in poly(ADP-ribose) BioXFEL Publications - - - 10 Sep 2024
12 Distinct conformational states enable transglutaminase 2 to promote cancer cell survival versus cell death BioXFEL Publications - - - 13 Aug 2024
13 Time-resolved cryogenic electron tomography for the study of transient cellular processes BioXFEL Publications - - - 08 May 2024
14 Time-resolved cryogenic electron tomography for the study of transient cellular processes BioXFEL Publications - - - 08 May 2024
15 Sequence-dependent conformational preferences of disordered single-stranded RNA BioXFEL Publications - - - 08 Feb 2024
16 Atomistic structure of the SARS-CoV-2 pseudoknot in solution from SAXS-driven molecular dynamics BioXFEL Publications - - - 11 Oct 2023
17 RNA structures and dynamics with Å resolution revealed by x-ray free-electron lasers BioXFEL Publications - - - 27 Sep 2023
18 Heterogeneity in M. tuberculosis β-lactamase inhibition by Sulbactam BioXFEL Publications - - - 07 Sep 2023
19 Chaotic advection mixer for capturing transient states of diverse biological macromolecular systems with time-resolved small-angle X-ray scattering BioXFEL Publications - - - 02 May 2023
20 Contrast variation SAXS: Sample preparation protocols, experimental procedures, and data analysis BioXFEL Publications - - - 22 Sep 2022
21 Chaotic advection mixer for capturing transient states of diverse biological macromolecular systems with time-resolved small-angle X-ray scattering BioXFEL Publications - - - 15 Sep 2022
22 Determining the structural ensembles of disordered RNA and proteins using an integrated approach BioXFEL Publications - - - 15 Sep 2022
23 Evolving Experimental Techniques for Structure-Based Drug Design BioXFEL Publications - - - 27 Aug 2022
24 Insights into the structural stability of major groove RNA triplexes by WAXS-guided MD simulations BioXFEL Publications - - - 11 Jul 2022
25 RNA Triplex Structures Revealed by WAXS-Driven MD Simulations BioXFEL Publications - - - 11 Jan 2022
26 What it takes for a successful mix-and-inject serial crystallography experiment: from a sample preparation and sample delivery perspective BioXFEL Publications - - - 21 Oct 2021
27 Visualization of biomolecular structures by WAXS and MD BioXFEL Publications - - - 21 Oct 2021
28 Decoding hidden structural information in solution wide-angle X-ray scattering (WAXS): from ensemble modeling to machine learning BioXFEL Publications - - - 21 Oct 2021
29 Observation of substrate diffusion and ligand binding in enzyme crystals using high-repetition-rate mix-and-inject serial crystallography BioXFEL Publications - - - 08 Sep 2021
30 Applications of microfluidic mixers for time-resolved SAXS and crystallography experiments BioXFEL Publications - - - 11 May 2021
31 The structural plasticity of nucleic acid duplexes revealed by WAXS and MD BioXFEL Publications - - - 23 Apr 2021
32 Solution structure(s) of trinucleosomes from contrast variation SAXS BioXFEL Publications - - - 12 Apr 2021
33 Breaking the Boundary between Solution X-Ray Scattering and Molecular Dynamics Simulations of Structured Nucleic Acids BioXFEL Publications - - - 12 Feb 2021
34 Direct Observation of the Mechanism of Antibiotic Resistance by Mix-and-Inject at the European XFEL BioXFEL Publications - - - 26 Nov 2020
35 Elucidating the Role of Microprocessor Protein DGCR8 in Bending RNA Structures BioXFEL Publications - - - 13 Nov 2020
36 Characterizing Enzyme Reactions in Microcrystals for Effective Mix-and-Inject Experiments using X-ray Free-Electron Lasers BioXFEL Publications - - - 21 Sep 2020
37 Machine learning deciphers structural features of RNA duplexes measured with solution X-ray scattering BioXFEL Publications - - - 11 Aug 2020
38 Convolutional Neural Networks Bridge Molecular Models and Solution X-ray Scattering Experiments BioXFEL Publications - - - 07 Feb 2020
39 Discovering Design Principles to Re-Engineer Functional RNA Elements BioXFEL Publications - - - 07 Feb 2020
40 Probing Mg2+-Mediated RNA-RNA Interactions in the Presence of Metabolites BioXFEL Publications - - - 07 Feb 2020
41 Quantitative Analysis of Salt-Induced RNA Duplex Variations by Wide-Angle X-ray Scattering (WAXS) BioXFEL Publications - - - 07 Feb 2020
42 DNA Sequence and Histone Core Composition Determine the Unwrapping Pathways in Nucleosomes BioXFEL Publications - - - 07 Feb 2020
43 Viral RNA Folding Studied through Contrast Variation Small Angle- X Ray Scattering BioXFEL Publications - - - 07 Feb 2020
44 Evidence that Primary Microrna Bends in the Presence of DGCR8 Seen using Both Saxs and FRET Measurements BioXFEL Publications - - - 07 Feb 2020
45 Ribosomal protein L11 selectively stabilizes a tertiary structure of the GTPase Center rRNA domain BioXFEL Publications - - - 24 Dec 2019
46 Visualizing Disordered Single-Stranded RNA: Connecting Sequence, Structure, and Electrostatics BioXFEL Publications - - - 05 Dec 2019
47 Salt Dependence of A-Form RNA Duplexes: Structures and Implications BioXFEL Publications - - - 23 Oct 2019
48 Microfluidic Mixing Injector Holder Enables Routine Structural Enzymology Measurements with Mix-and-Inject Serial Crystallography Using X-ray Free Electron Lasers BioXFEL Publications - - - 07 May 2019
49 Following Folding Pathways of Common Riboswitch Motifs with Time-Resolved Single-Molecule FRET BioXFEL Publications - - - 15 Feb 2019
50 Time-Resolved Contrast Variation SAXS for Studying RNA-Protein Interactions BioXFEL Publications - - - 15 Feb 2019
51 DNA Sequence and Histone Core Composition Control the Unwrapping of DNA from Nucleosome Core Particles BioXFEL Publications - - - 15 Feb 2019
52 Virus Dynamics Studied by Time-Resolved Small Angle X-Ray Scattering BioXFEL Publications - - - 15 Feb 2019
53 Conformations of an RNA Helix-Junction-Helix Construct revealed by SAXS Refinement of MD Simulations BioXFEL Publications - - - 22 Nov 2018
54 How the Conformations of an Internal Junction Contribute to Fold an RNA Domain BioXFEL Publications - - - 04 Oct 2018
55 Divalent ions tune the kinetics of a bacterial GTPase center rRNA folding transition from secondary to tertiary structure BioXFEL Publications - - - 25 Sep 2018
56 Local DNA Sequence Controls Asymmetry of DNA Unwrapping from Nucleosome Core Particles BioXFEL Publications - - - 31 Jul 2018
57 Enzyme intermediates captured “on the fly” by mix-and-inject serial crystallography BioXFEL Publications - - - 30 May 2018
58 Revealing the distinct folding phases of an RNA three-helix junction BioXFEL Publications - - - 24 Apr 2018
59 The ATPase motor of the Chd1 chromatin remodeler stimulates DNA unwrapping from the nucleosome BioXFEL Publications - - - 16 Mar 2018
60 Structural changes of tailless bacteriophage ΦX174 during penetration of bacterial cell walls BioXFEL Publications - - - 11 Dec 2017
61 Enzyme Intermediates Captured "on-the-fly" by Mix-and-Inject Serial Crystallography BioXFEL Publications - - - 13 Oct 2017
62 Corrigendum: Double-flow focused liquid injector for efficient serial femtosecond crystallography BioXFEL Publications - - - 21 Jun 2017
63 Double-flow focused liquid injector for efficient serial femtosecond crystallography BioXFEL Publications - - - 16 Mar 2017
64 The impact of base stacking on the conformations and electrostatics of single-stranded DNA BioXFEL Publications - - - 18 Feb 2017
65 Spermine Condenses DNA, but Not RNA Duplexes BioXFEL Publications - - - 10 Jan 2017
66 Asymmetric unwrapping of nucleosomal DNA propagates asymmetric opening and dissociation of the histone core BioXFEL Publications - - - 28 Dec 2016
67 Structural enzymology using X-ray free electron lasers BioXFEL Publications - - - 15 Dec 2016
68 Visualizing single-stranded nucleic acids in solution BioXFEL Publications - - - 14 Dec 2016
69 Mixing injector enables time-resolved crystallography with high hit rate at X-ray free electron lasers BioXFEL Publications - - - 29 Aug 2016
70 Succinyl-5-aminoimidazole-4-carboxamide-1-ribose 5′-Phosphate (SAICAR) Activates Pyruvate Kinase Isoform M2 (PKM2) in Its Dimeric Form BioXFEL Publications - - - 02 Aug 2016
71 Opposing Effects of Multivalent Ions on the Flexibility of DNA and RNA BioXFEL Publications - - - 06 Jul 2016
72 Extracting water and ion distributions from solution x-ray scattering experiments BioXFEL Publications - - - 03 Jun 2016
73 Understanding nucleic acid structural changes by comparing wide-angle x-ray scattering (WAXS) experiments to molecular dynamics simulations BioXFEL Publications - - - 25 May 2016
74 Multi-shell model of ion-induced nucleic acid condensation BioXFEL Publications - - - 21 Apr 2016
75 SAXS studies of RNA: structures, dynamics, and interactions with partners BioXFEL Publications - - - 13 Apr 2016
76 Protein–DNA and ion–DNA interactions revealed through contrast variation SAXS BioXFEL Publications - - - 02 Apr 2016
77 The Role of Correlation and Solvation in Ion Interactions with B-DNA BioXFEL Publications - - - 19 Jan 2016
78 Tuning RNA Flexibility with Helix Length and Junction Sequence BioXFEL Publications - - - 15 Dec 2015
79 Determining the Locations of Ions and Water around DNA from X-Ray Scattering Measurements BioXFEL Publications - - - 16 Jun 2015
80 Fast Binding Kinetics of RNA Aptamers Measured using a Novel Microfluidic Mixer BioXFEL Publications - - - 18 Apr 2015
81 Making water-soluble integral membrane proteins in vivo using an amphipathic protein fusion strategy BioXFEL Publications - - - 08 Apr 2015
82 A microfabricated fixed path length silicon sample holder improves background subtraction for cryoSAXS BioXFEL Publications - - - 29 Jan 2015
83 Double-focusing mixing jet for XFEL study of chemical kinetics BioXFEL Publications - - - 06 Oct 2014
84 Accurate small and wide angle x-ray scattering profiles from atomic models of proteins and nucleic acids BioXFEL Publications - - - 30 Sep 2014
85 Revealing transient structures of nucleosomes as DNA unwinds BioXFEL Publications - - - 03 Jul 2014
86 Polyelectrolyte properties of single stranded DNA measured using SAXS and single molecule FRET: Beyond the wormlike chain model BioXFEL Publications - - - 20 Apr 2013
87 Role of Ion Valence in the Submillisecond Collapse and Folding of a Small RNA Domain BioXFEL Publications - - - 12 Feb 2013
88 Breaking the Radiation Damage Limit with Cryo-SAXS BioXFEL Publications - - - 09 Jan 2013