Search
Results (page 1 of 1)
-
Series 21 Jul 2015 Contributor(s): Nadia Zatsepin
Detectors at CXI … The main detectors used at the Coherent X-ray Imaging (CXI) endstation are Cornell-SLAC pixel array detectors (CSPAD).… CXI Standard Configuration" in the micron-focus chamber the most common operating mode, which includes 2 full size CSPADs.……
https://www.bioxfel.org/resources/LCLSdata_detector_geometry
-
Series 21 Jul 2015 Contributor(s): Nadia Zatsepin
During your beamtime … 1. Before your first non-DARK run: Occasionally, some data are not recorded by accident (such as detector distance).… At the start of the shift, confirm with the beamline scientist that those data are selected for recording in the DAQ. Soon after the first data are recorded, confirm…
https://www.bioxfel.org/resources/LCLSdata_during_your_beamtime
-
Introduction to serial femtosecond crystallography data analysis
Series 21 Jul 2015 Contributor(s): Nadia Zatsepin, Tom Grant
Click or use the left and right arrow keys to advance forward and backward in this embedded presentation (downloadable PDF available in the Supporting Docs tab above) … Serial femtosecond crystallography with X-ray free electron lasers X-ray free electron lasers (XFELs) have enabled biomolecular nano- and micro-crystallography at…
-
Series 21 Jul 2015 Contributor(s): Nadia Zatsepin
Before your beamtime … 1. Get an account in the LCLS system. You need a SLAC user portal account (you must be listed as a collaborator on a proposal to get one), and you also need a unix account. Follow the instructions here: https://confluence.slac.stanford.edu/display/PCDS/Accounts Make sure your SLAC Cyber Security…
https://www.bioxfel.org/resources/LCLSdata_before_your_beamtime
-
Cheetah documentation - all keywords
Series 21 Jul 2015 Contributor(s): Nadia Zatsepin
The official Cheetah website is http://www.desy.… These pages will not reproduce all the content from the Cheetah site, but are meant as an addendum.… Complete listing of keywords for Cheetah's configuration files Many of these are power user settings designed for turning on or off features in…
https://www.bioxfel.org/resources/cheetah_documentation_keywords
-
Series 21 Jul 2015 Contributor(s): Nadia Zatsepin
Accessing your data at LCLS The LCLS data analysis website is an excellent resource to help users do everything from setting up an account to analyzing their LCLS data with LCLS software. Our site is designed to help you with data analysis for serial femtosecond crystallography experiments at LCLS.… Please refer to the LCLS…
https://www.bioxfel.org/resources/LCLSdata_accessing_your_data
-
5. Data reduction and hit finding
Series 21 Jul 2015 Contributor(s): Nadia Zatsepin, Richard A Kirian
Graphical Image Analysis at LCLS: Psocake New graphical image analysis software (Psocake) have been developed at LCLS by Chunhong Yoon.… Psocake enables you to deal with or run the following: … Diffraction Geometry ROI Histogram Small Data Peak Finder … Hit Finder ……
-
Series 21 Jul 2015 Contributor(s): Nadia Zatsepin
The official Cheetah website is http://www.desy.… These pages will not reproduce all the content from the Cheetah site, but are meant as an addendum.… For a list of all Cheetah's keywords, click here. What is Cheetah? Cheetah is a set of programs for processing serial diffraction data data from at free…



